Wall clock time and date at job start Mon Mar 30 2020 06:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46920 * 2 1 4 4 N 1.46895 * 109.46981 * 120.00003 * 2 1 3 5 5 C 1.50695 * 109.47142 * 240.00410 * 2 1 3 6 6 C 1.38288 * 119.93278 * 265.00062 * 5 2 1 7 7 C 1.38091 * 120.09199 * 180.02562 * 6 5 2 8 8 C 1.38945 * 119.94651 * 359.97438 * 7 6 5 9 9 N 1.39668 * 120.06296 * 179.97438 * 8 7 6 10 10 C 1.46505 * 120.00501 * 0.02562 * 9 8 7 11 11 C 1.46508 * 119.99761 * 180.02562 * 9 8 7 12 12 C 1.50704 * 109.46984 * 90.00282 * 11 9 8 13 13 H 1.08005 * 119.99729 * 359.97438 * 12 11 9 14 14 C 1.37872 * 119.99767 * 180.02562 * 12 11 9 15 15 N 1.31506 * 120.00190 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99716 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47374 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47560 * 119.99869 * 16 14 12 19 19 H 1.48502 * 109.47093 * 239.99948 * 16 14 12 20 20 C 1.38860 * 119.86760 * 0.02562 * 8 7 6 21 21 C 1.38244 * 119.90982 * 359.97438 * 20 8 7 22 22 Cl 1.73609 * 119.97457 * 180.02562 * 21 20 8 23 23 H 1.08999 * 109.46920 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47001 * 299.99899 * 1 2 3 25 25 H 1.09005 * 109.47296 * 59.99897 * 1 2 3 26 26 H 1.00896 * 111.00685 * 296.04611 * 4 2 1 27 27 H 1.00900 * 111.00218 * 60.00587 * 4 2 1 28 28 H 1.08001 * 119.95648 * 0.02562 * 6 5 2 29 29 H 1.07997 * 120.02752 * 180.27530 * 7 6 5 30 30 H 1.09001 * 109.47290 * 89.99705 * 10 9 8 31 31 H 1.09000 * 109.47103 * 210.00231 * 10 9 8 32 32 H 1.09005 * 109.46706 * 329.99704 * 10 9 8 33 33 H 1.09000 * 109.47175 * 209.99984 * 11 9 8 34 34 H 1.08992 * 109.46969 * 329.99823 * 11 9 8 35 35 H 0.96998 * 120.00462 * 180.02562 * 15 14 12 36 36 H 1.07997 * 120.04832 * 179.97438 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0323 -0.7103 -1.2305 6 6 2.3608 -2.0521 -1.1669 7 6 2.8219 -2.7061 -2.2923 8 6 2.9555 -2.0150 -3.4903 9 7 3.4222 -2.6739 -4.6299 10 6 3.7709 -4.0953 -4.5631 11 6 3.5630 -1.9437 -5.8922 12 6 4.9454 -1.3497 -5.9774 13 1 5.6486 -1.5007 -5.1716 14 6 5.3120 -0.6127 -7.0834 15 7 4.4556 -0.4285 -8.0642 16 14 7.0258 0.1229 -7.1893 17 1 7.7914 -0.2275 -5.9661 18 1 7.7241 -0.4185 -8.3828 19 1 6.9243 1.6000 -7.3029 20 6 2.6251 -0.6677 -3.5519 21 6 2.1640 -0.0186 -2.4218 22 17 1.7498 1.6657 -2.4971 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.7502 -0.1990 2.0372 27 1 1.6962 -1.6479 1.2227 28 1 2.2566 -2.5893 -0.2358 29 1 3.0739 -3.7551 -2.2426 30 1 2.8924 -4.6964 -4.7979 31 1 4.5609 -4.3098 -5.2828 32 1 4.1188 -4.3372 -3.5588 33 1 3.4094 -2.6278 -6.7268 34 1 2.8215 -1.1460 -5.9351 35 1 4.7137 0.0897 -8.8425 36 1 2.7282 -0.1276 -4.4814 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070602673.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:30 Heat of formation + Delta-G solvation = 20.301189 kcal Electronic energy + Delta-G solvation = -18223.958313 eV Core-core repulsion = 15347.585118 eV Total energy + Delta-G solvation = -2876.373195 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.37513 -36.92178 -35.96498 -34.49082 -32.65311 -30.44218 -29.44529 -28.28582 -27.72267 -25.16753 -23.46376 -21.70960 -21.42340 -19.53707 -17.20657 -16.51943 -16.15048 -15.36632 -14.72341 -14.56591 -14.14718 -13.90730 -13.66548 -13.56010 -12.97764 -12.90366 -12.64233 -12.43025 -12.17458 -11.63405 -11.46527 -11.29983 -11.14623 -11.08819 -10.87996 -10.72369 -10.38231 -10.26228 -9.97894 -9.77206 -8.94536 -8.66791 -8.52741 -8.23216 -6.56452 -6.06214 -4.19800 1.79632 2.06169 2.61126 3.25403 3.33812 3.38700 4.05582 4.26230 4.40056 4.62601 4.98409 5.19650 5.22398 5.34315 5.43099 5.59621 5.74100 5.77437 5.90297 5.99465 6.06838 6.10222 6.19057 6.28851 6.37548 6.65887 6.85166 6.92736 7.00768 7.21557 7.26670 7.30909 7.44657 7.78297 8.10140 8.17084 8.35175 8.88850 9.47529 10.93650 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.021363 B = 0.005711 C = 0.005001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.355643 B = 4901.825585 C = 5597.329077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.138 3.862 3 H 0.087 0.913 4 N -0.841 5.841 5 C -0.154 4.154 6 C -0.048 4.048 7 C -0.216 4.216 8 C 0.249 3.751 9 N -0.611 5.611 10 C 0.097 3.903 11 C 0.247 3.753 12 C -0.533 4.533 13 H 0.061 0.939 14 C 0.063 3.937 15 N -0.894 5.894 16 Si 0.896 3.104 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.282 1.282 20 C -0.179 4.179 21 C 0.021 3.979 22 Cl -0.086 7.086 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.064 0.936 26 H 0.338 0.662 27 H 0.337 0.663 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.038 0.962 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.032 0.968 34 H 0.036 0.964 35 H 0.264 0.736 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.056 -2.386 13.802 15.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.026 3.974 3 H 0.105 0.895 4 N -0.370 5.370 5 C -0.158 4.158 6 C -0.067 4.067 7 C -0.239 4.239 8 C 0.140 3.860 9 N -0.316 5.316 10 C -0.047 4.047 11 C 0.127 3.873 12 C -0.572 4.572 13 H 0.079 0.921 14 C -0.139 4.139 15 N -0.533 5.533 16 Si 0.723 3.277 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.208 1.208 20 C -0.202 4.202 21 C -0.006 4.006 22 Cl -0.058 7.058 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.150 0.850 27 H 0.151 0.849 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.288 -2.136 13.088 14.676 hybrid contribution -0.023 0.500 -0.068 0.505 sum -6.311 -1.636 13.020 14.562 Atomic orbital electron populations 1.22592 0.97366 1.01877 1.02111 1.20110 0.91707 0.97684 0.87865 0.89471 1.58947 1.67583 1.06376 1.04110 1.18988 1.09325 0.94401 0.93050 1.20343 0.96613 0.92784 0.97006 1.20664 1.10616 1.00330 0.92340 1.17729 0.90390 0.90776 0.87063 1.47122 1.66468 1.08764 1.09202 1.21514 0.99522 0.81971 1.01645 1.19345 0.97066 0.91892 0.78977 1.21591 0.98692 1.32803 1.04078 0.92125 1.24948 0.97597 0.95987 0.95417 1.69931 1.34932 1.40297 1.08109 0.86471 0.84153 0.79040 0.78021 1.19672 1.20928 1.20779 1.20672 1.06737 0.93926 0.98890 1.20350 1.01620 0.84016 0.94662 1.98317 1.92134 1.16795 1.98514 0.92748 0.93042 0.91653 0.85007 0.84934 0.86251 0.86233 0.94392 0.91209 0.92528 0.94964 0.94593 0.92646 0.83894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 9.46 37.16 0.35 -1.64 16 2 C 0.14 1.76 3.10 -68.87 -0.21 1.55 16 3 H 0.09 1.20 7.12 -51.93 -0.37 0.83 16 4 N -0.84 -9.11 8.82 -5.66 -0.05 -9.16 16 5 C -0.15 -2.42 5.06 -104.55 -0.53 -2.95 16 6 C -0.05 -0.73 9.26 -39.62 -0.37 -1.09 16 7 C -0.22 -3.61 9.20 -39.37 -0.36 -3.97 16 8 C 0.25 4.93 6.55 -83.80 -0.55 4.38 16 9 N -0.61 -12.74 2.99 -181.00 -0.54 -13.28 16 10 C 0.10 1.64 10.19 59.85 0.61 2.25 16 11 C 0.25 6.10 4.91 -5.19 -0.03 6.07 16 12 C -0.53 -14.44 9.39 -34.44 -0.32 -14.76 16 13 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 14 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -25.53 13.28 55.43 0.74 -24.79 16 16 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 C -0.18 -3.65 8.99 -39.35 -0.35 -4.00 16 21 C 0.02 0.38 6.31 -39.53 -0.25 0.13 16 22 Cl -0.09 -1.41 27.14 -51.86 -1.41 -2.82 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.79 7.89 -51.93 -0.41 0.38 16 26 H 0.34 2.91 9.07 -39.29 -0.36 2.56 16 27 H 0.34 3.21 7.20 -39.29 -0.28 2.92 16 28 H 0.12 1.47 6.28 -52.49 -0.33 1.14 16 29 H 0.12 1.75 6.15 -52.49 -0.32 1.43 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 32 H 0.06 0.83 6.20 -51.93 -0.32 0.51 16 33 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 34 H 0.04 0.94 6.20 -51.93 -0.32 0.62 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.14 3.26 6.14 -52.49 -0.32 2.93 16 LS Contribution 309.91 15.07 4.67 4.67 Total: -1.00 -28.72 309.91 -8.41 -37.13 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -4.69 Total: 4.33 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -2.11 Total: -12.42 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: 0.15 Total: -47.24 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -1.41 Total: -2.82 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.72 -8.41 -37.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070602673.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.435 kcal (2) G-P(sol) polarization free energy of solvation -28.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds