Wall clock time and date at job start Mon Mar 30 2020 06:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46920 * 2 1 4 4 N 1.46895 * 109.46981 * 120.00003 * 2 1 3 5 5 C 1.50695 * 109.47142 * 240.00410 * 2 1 3 6 6 C 1.38288 * 119.93278 * 265.00062 * 5 2 1 7 7 C 1.38091 * 120.09199 * 180.02562 * 6 5 2 8 8 C 1.38945 * 119.94651 * 359.97438 * 7 6 5 9 9 N 1.39668 * 120.06296 * 179.97438 * 8 7 6 10 10 C 1.46505 * 120.00501 * 0.02562 * 9 8 7 11 11 C 1.46508 * 119.99761 * 180.02562 * 9 8 7 12 12 C 1.50704 * 109.46984 * 90.00282 * 11 9 8 13 13 H 1.08005 * 119.99729 * 359.97438 * 12 11 9 14 14 C 1.37872 * 119.99767 * 180.02562 * 12 11 9 15 15 N 1.31506 * 120.00190 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99716 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47374 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47560 * 119.99869 * 16 14 12 19 19 H 1.48502 * 109.47093 * 239.99948 * 16 14 12 20 20 C 1.38860 * 119.86760 * 0.02562 * 8 7 6 21 21 C 1.38244 * 119.90982 * 359.97438 * 20 8 7 22 22 Cl 1.73609 * 119.97457 * 180.02562 * 21 20 8 23 23 H 1.08999 * 109.46920 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47001 * 299.99899 * 1 2 3 25 25 H 1.09005 * 109.47296 * 59.99897 * 1 2 3 26 26 H 1.00896 * 111.00685 * 296.04611 * 4 2 1 27 27 H 1.00900 * 111.00218 * 60.00587 * 4 2 1 28 28 H 1.08001 * 119.95648 * 0.02562 * 6 5 2 29 29 H 1.07997 * 120.02752 * 180.27530 * 7 6 5 30 30 H 1.09001 * 109.47290 * 89.99705 * 10 9 8 31 31 H 1.09000 * 109.47103 * 210.00231 * 10 9 8 32 32 H 1.09005 * 109.46706 * 329.99704 * 10 9 8 33 33 H 1.09000 * 109.47175 * 209.99984 * 11 9 8 34 34 H 1.08992 * 109.46969 * 329.99823 * 11 9 8 35 35 H 0.96998 * 120.00462 * 180.02562 * 15 14 12 36 36 H 1.07997 * 120.04832 * 179.97438 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0323 -0.7103 -1.2305 6 6 2.3608 -2.0521 -1.1669 7 6 2.8219 -2.7061 -2.2923 8 6 2.9555 -2.0150 -3.4903 9 7 3.4222 -2.6739 -4.6299 10 6 3.7709 -4.0953 -4.5631 11 6 3.5630 -1.9437 -5.8922 12 6 4.9454 -1.3497 -5.9774 13 1 5.6486 -1.5007 -5.1716 14 6 5.3120 -0.6127 -7.0834 15 7 4.4556 -0.4285 -8.0642 16 14 7.0258 0.1229 -7.1893 17 1 7.7914 -0.2275 -5.9661 18 1 7.7241 -0.4185 -8.3828 19 1 6.9243 1.6000 -7.3029 20 6 2.6251 -0.6677 -3.5519 21 6 2.1640 -0.0186 -2.4218 22 17 1.7498 1.6657 -2.4971 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.7502 -0.1990 2.0372 27 1 1.6962 -1.6479 1.2227 28 1 2.2566 -2.5893 -0.2358 29 1 3.0739 -3.7551 -2.2426 30 1 2.8924 -4.6964 -4.7979 31 1 4.5609 -4.3098 -5.2828 32 1 4.1188 -4.3372 -3.5588 33 1 3.4094 -2.6278 -6.7268 34 1 2.8215 -1.1460 -5.9351 35 1 4.7137 0.0897 -8.8425 36 1 2.7282 -0.1276 -4.4814 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070602673.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:29 Heat of formation + Delta-G solvation = 2.858784 kcal Electronic energy + Delta-G solvation = -18224.714672 eV Core-core repulsion = 15347.585118 eV Total energy + Delta-G solvation = -2877.129554 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.73182 -38.28370 -37.25643 -35.87142 -34.61198 -31.85246 -30.68135 -29.77781 -29.03470 -26.74699 -25.06970 -23.14842 -22.75857 -20.88610 -18.68413 -18.46833 -17.38764 -16.90967 -16.21895 -16.05513 -15.53765 -15.29485 -14.97987 -14.75975 -14.37264 -14.17672 -14.02596 -13.74715 -13.51043 -13.20183 -13.08637 -12.82175 -12.63154 -12.46777 -12.39872 -12.33720 -12.12621 -11.69918 -11.58754 -11.46675 -10.65493 -10.41980 -9.64877 -9.53411 -8.38511 -7.87062 -6.38112 0.41168 0.69808 1.24828 1.35189 1.37678 1.49228 2.33216 2.58456 2.90041 3.05949 3.69245 3.93028 4.01228 4.27155 4.35412 4.40056 4.47848 4.62885 4.69156 4.73033 4.84572 4.93229 4.97095 5.03028 5.07465 5.19951 5.26817 5.38495 5.50462 5.64031 5.67075 5.93773 6.05427 6.33722 6.43108 6.72796 6.79819 6.84477 7.33711 8.82518 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.021363 B = 0.005711 C = 0.005001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.355643 B = 4901.825585 C = 5597.329077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.141 3.859 3 H 0.077 0.923 4 N -0.843 5.843 5 C -0.146 4.146 6 C -0.041 4.041 7 C -0.206 4.206 8 C 0.222 3.778 9 N -0.626 5.626 10 C 0.096 3.904 11 C 0.265 3.735 12 C -0.541 4.541 13 H 0.050 0.950 14 C 0.014 3.986 15 N -0.926 5.926 16 Si 0.959 3.041 17 H -0.270 1.270 18 H -0.273 1.273 19 H -0.279 1.279 20 C -0.208 4.208 21 C 0.010 3.990 22 Cl -0.080 7.080 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.049 0.951 26 H 0.353 0.647 27 H 0.347 0.653 28 H 0.158 0.842 29 H 0.146 0.854 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.013 0.987 34 H 0.010 0.990 35 H 0.267 0.733 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.930 -3.232 16.610 18.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.030 3.970 3 H 0.096 0.904 4 N -0.376 5.376 5 C -0.149 4.149 6 C -0.060 4.060 7 C -0.228 4.228 8 C 0.116 3.884 9 N -0.333 5.333 10 C -0.046 4.046 11 C 0.143 3.857 12 C -0.579 4.579 13 H 0.068 0.932 14 C -0.185 4.185 15 N -0.565 5.565 16 Si 0.784 3.216 17 H -0.195 1.195 18 H -0.198 1.198 19 H -0.205 1.205 20 C -0.232 4.232 21 C -0.018 4.018 22 Cl -0.051 7.051 23 H 0.080 0.920 24 H 0.092 0.908 25 H 0.068 0.932 26 H 0.167 0.833 27 H 0.162 0.838 28 H 0.176 0.824 29 H 0.164 0.836 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.031 0.969 34 H 0.028 0.972 35 H 0.076 0.924 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.176 -2.995 15.942 17.357 hybrid contribution -0.139 0.786 -0.813 1.140 sum -6.315 -2.208 15.128 16.541 Atomic orbital electron populations 1.22530 0.95832 1.02517 1.02509 1.20014 0.92747 0.96904 0.87381 0.90448 1.58864 1.67684 1.07074 1.03929 1.19443 1.07341 0.94879 0.93257 1.20795 0.94816 0.92519 0.97896 1.20972 1.09238 1.01434 0.91200 1.18001 0.91645 0.90835 0.87894 1.46969 1.68055 1.10046 1.08235 1.21672 1.00100 0.79970 1.02900 1.18811 0.95255 0.90971 0.80667 1.21790 0.99480 1.32957 1.03699 0.93200 1.25739 1.01266 0.96375 0.95116 1.70031 1.36743 1.41087 1.08687 0.85495 0.79750 0.78170 0.78220 1.19472 1.19805 1.20509 1.20512 1.09506 0.94755 0.98428 1.20489 1.01850 0.84584 0.94860 1.98309 1.92033 1.16243 1.98547 0.91977 0.90791 0.93181 0.83257 0.83778 0.82424 0.83603 0.92504 0.92347 0.89932 0.96854 0.97247 0.92399 0.87751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.36 9.46 71.98 0.68 -2.68 16 2 C 0.14 3.22 3.10 44.17 0.14 3.36 16 3 H 0.08 1.96 7.12 -2.39 -0.02 1.94 16 4 N -0.84 -14.96 8.82 -171.82 -1.52 -16.47 16 5 C -0.15 -4.29 5.06 -19.82 -0.10 -4.39 16 6 C -0.04 -1.11 9.26 22.25 0.21 -0.91 16 7 C -0.21 -6.38 9.20 22.40 0.21 -6.17 16 8 C 0.22 8.86 6.55 38.21 0.25 9.11 16 9 N -0.63 -26.68 2.99 -726.55 -2.17 -28.86 16 10 C 0.10 3.16 10.19 127.77 1.30 4.46 16 11 C 0.26 13.79 4.91 85.63 0.42 14.21 16 12 C -0.54 -30.36 9.39 25.60 0.24 -30.12 16 13 H 0.05 2.85 7.81 -2.91 -0.02 2.82 16 14 C 0.01 0.81 5.46 84.65 0.46 1.27 16 15 N -0.93 -54.57 13.28 21.44 0.28 -54.29 16 16 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 17 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 20 C -0.21 -8.85 8.99 22.42 0.20 -8.65 16 21 C 0.01 0.35 6.31 22.31 0.14 0.49 16 22 Cl -0.08 -2.66 27.14 -2.72 -0.07 -2.73 16 23 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.05 1.12 7.89 -2.38 -0.02 1.11 16 26 H 0.35 4.68 9.07 -89.70 -0.81 3.87 16 27 H 0.35 4.96 7.20 -89.69 -0.65 4.31 16 28 H 0.16 3.05 6.28 -2.91 -0.02 3.03 16 29 H 0.15 3.70 6.15 -2.91 -0.02 3.69 16 30 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.06 2.02 8.07 -2.39 -0.02 2.00 16 32 H 0.08 2.24 6.20 -2.38 -0.01 2.22 16 33 H 0.01 0.73 8.07 -2.39 -0.02 0.72 16 34 H 0.01 0.54 6.20 -2.39 -0.01 0.53 16 35 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 36 H 0.10 5.18 6.14 -2.91 -0.02 5.16 16 Total: -1.00 -64.12 309.91 2.35 -61.77 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -0.35 Total: 14.03 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: 4.15 Total: -20.01 kcal Atomic # 7 Polarization: -96.21 SS G_CDS: -3.40 Total: -99.62 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 17 Polarization: -2.66 SS G_CDS: -0.07 Total: -2.73 kcal Total: -64.12 2.35 -61.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070602673.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.632 kcal (2) G-P(sol) polarization free energy of solvation -64.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds