Wall clock time and date at job start Mon Mar 30 2020 07:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35884 * 117.00386 * 2 1 4 4 C 1.39862 * 119.58351 * 359.97438 * 3 2 1 5 5 C 1.35980 * 120.91335 * 180.02562 * 4 3 2 6 6 C 1.40590 * 119.76047 * 359.97438 * 5 4 3 7 7 C 1.40517 * 121.21975 * 180.02562 * 6 5 4 8 8 C 1.36113 * 119.69202 * 180.09071 * 7 6 5 9 9 C 1.39378 * 120.97394 * 0.02562 * 8 7 6 10 10 C 1.36067 * 120.95801 * 359.92285 * 9 8 7 11 11 C 1.40544 * 119.72817 * 0.06126 * 10 9 8 12 12 C 1.36536 * 119.58269 * 179.97438 * 3 2 1 13 13 C 1.50694 * 120.07316 * 359.94490 * 12 3 2 14 14 H 1.09004 * 109.50596 * 270.32189 * 13 12 3 15 15 C 1.50695 * 109.49160 * 30.38313 * 13 12 3 16 16 H 1.08000 * 119.99827 * 35.09742 * 15 13 12 17 17 C 1.37876 * 120.00238 * 215.09788 * 15 13 12 18 18 N 1.31514 * 119.99988 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 120.00143 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47021 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47032 * 119.99425 * 19 17 15 22 22 H 1.48491 * 109.47018 * 240.00083 * 19 17 15 23 23 C 1.53078 * 109.34620 * 150.34863 * 13 12 3 24 24 C 1.50703 * 120.03975 * 180.02562 * 10 9 8 25 25 H 1.08993 * 109.47683 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46880 * 299.99983 * 1 2 3 27 27 H 1.09000 * 109.46739 * 59.99116 * 1 2 3 28 28 H 1.07998 * 119.54253 * 0.02562 * 4 3 2 29 29 H 1.08000 * 120.11964 * 179.97438 * 5 4 3 30 30 H 1.07993 * 120.15560 * 0.10993 * 7 6 5 31 31 H 1.08002 * 119.50778 * 179.97438 * 8 7 6 32 32 H 1.07999 * 119.52233 * 179.97438 * 9 8 7 33 33 H 0.96996 * 120.00312 * 180.02562 * 18 17 15 34 34 H 1.09005 * 109.50783 * 178.41755 * 23 13 12 35 35 H 1.09000 * 109.51053 * 298.51252 * 23 13 12 36 36 H 1.09002 * 109.44256 * 89.54891 * 24 10 9 37 37 H 1.08992 * 109.52872 * 329.48372 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2107 0.0000 4 6 1.2758 2.3782 -0.0005 5 6 1.8650 3.6037 -0.0011 6 6 3.2673 3.7039 -0.0005 7 6 3.9081 4.9544 -0.0005 8 6 5.2679 5.0152 -0.0019 9 6 6.0379 3.8534 -0.0038 10 6 5.4519 2.6254 -0.0028 11 6 4.0502 2.5220 -0.0011 12 6 3.4100 1.2721 0.0005 13 6 4.2230 0.0033 0.0024 14 1 4.4141 -0.3050 1.0303 15 6 3.4628 -1.0820 -0.7152 16 1 2.8450 -0.8364 -1.5663 17 6 3.5560 -2.3887 -0.2853 18 7 4.3079 -2.6879 0.7514 19 14 2.6142 -3.7343 -1.1752 20 1 1.8473 -3.1408 -2.3000 21 1 3.5697 -4.7408 -1.7036 22 1 1.6764 -4.3907 -0.2293 23 6 5.5538 0.2528 -0.7119 24 6 6.3044 1.3826 -0.0044 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5140 -0.8899 28 1 0.1983 2.3053 -0.0005 29 1 1.2578 4.4969 -0.0019 30 1 3.3245 5.8631 0.0008 31 1 5.7574 5.9779 -0.0023 32 1 7.1152 3.9289 -0.0053 33 1 4.3737 -3.6072 1.0537 34 1 6.1559 -0.6556 -0.6875 35 1 5.3638 0.5359 -1.7472 36 1 6.5181 1.0880 1.0231 37 1 7.2393 1.5828 -0.5276 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078774250.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:28 Heat of formation + Delta-G solvation = -2.242414 kcal Electronic energy + Delta-G solvation = -20565.620104 eV Core-core repulsion = 17658.409444 eV Total energy + Delta-G solvation = -2907.210660 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.35663 -38.14515 -35.68979 -34.99818 -32.48896 -30.25354 -29.73341 -29.13906 -26.69744 -25.84236 -23.55734 -22.39840 -21.67735 -21.52079 -18.35489 -17.61628 -16.71734 -16.12869 -15.93748 -14.99294 -14.68060 -14.48358 -14.10408 -13.94125 -13.22003 -13.01579 -12.55909 -12.45576 -12.33400 -12.24333 -11.97589 -11.35448 -11.17589 -10.96097 -10.90300 -10.83812 -10.60606 -10.44265 -10.19985 -9.91944 -9.78662 -9.11118 -8.97265 -8.57172 -8.33719 -7.80066 -6.70316 -5.93604 -3.89434 1.13434 1.64359 2.66410 3.33009 3.41267 3.46065 3.58984 4.23147 4.50475 4.72005 5.08562 5.25636 5.30975 5.38954 5.45519 5.63137 5.66703 5.72282 5.74679 5.82582 5.96739 6.03077 6.06627 6.18051 6.22209 6.40180 6.59787 6.62834 6.70877 6.83078 6.92328 6.95902 7.09254 7.11080 7.12346 7.51303 7.57055 7.69939 7.83959 8.00861 8.35794 8.50500 9.12371 9.68431 11.15668 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.021473 B = 0.007995 C = 0.006063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.658325 B = 3501.279460 C = 4617.254458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.249 6.249 3 C 0.121 3.879 4 C -0.181 4.181 5 C -0.106 4.106 6 C -0.080 4.080 7 C -0.114 4.114 8 C -0.129 4.129 9 C -0.138 4.138 10 C -0.050 4.050 11 C -0.023 4.023 12 C -0.074 4.074 13 C 0.073 3.927 14 H 0.074 0.926 15 C -0.467 4.467 16 H 0.058 0.942 17 C 0.066 3.934 18 N -0.896 5.896 19 Si 0.888 3.112 20 H -0.273 1.273 21 H -0.287 1.287 22 H -0.286 1.286 23 C -0.099 4.099 24 C -0.087 4.087 25 H 0.088 0.912 26 H 0.040 0.960 27 H 0.041 0.959 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.259 0.741 34 H 0.065 0.935 35 H 0.044 0.956 36 H 0.074 0.926 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.329 11.043 -0.718 11.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.161 6.161 3 C 0.075 3.925 4 C -0.199 4.199 5 C -0.124 4.124 6 C -0.080 4.080 7 C -0.132 4.132 8 C -0.147 4.147 9 C -0.156 4.156 10 C -0.050 4.050 11 C -0.023 4.023 12 C -0.075 4.075 13 C 0.055 3.945 14 H 0.092 0.908 15 C -0.505 4.505 16 H 0.076 0.924 17 C -0.135 4.135 18 N -0.536 5.536 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.214 1.214 22 H -0.212 1.212 23 C -0.137 4.137 24 C -0.124 4.124 25 H 0.106 0.894 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.138 0.862 29 H 0.136 0.864 30 H 0.133 0.867 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.203 10.677 -0.618 10.919 hybrid contribution -0.935 -0.473 -0.413 1.127 sum -3.139 10.204 -1.031 10.725 Atomic orbital electron populations 1.23032 0.83301 1.02757 0.99483 1.87142 1.17181 1.24231 1.87516 1.18561 0.92047 0.84340 0.97517 1.21082 0.99639 0.92890 1.06333 1.20573 0.93254 0.96775 1.01843 1.17977 0.93265 0.92973 1.03756 1.20795 0.94675 0.95976 1.01790 1.20615 0.93961 0.97754 1.02359 1.20569 0.99334 0.91988 1.03676 1.19834 0.92876 0.95280 0.96999 1.17721 0.92746 0.92002 0.99819 1.20126 0.91614 0.95781 0.99962 1.17910 0.89929 0.87681 0.98981 0.90815 1.20891 1.25279 0.90823 1.13534 0.92386 1.24873 0.95175 0.98658 0.94809 1.69914 1.39705 1.18744 1.25209 0.86595 0.79925 0.82040 0.79762 1.19796 1.21365 1.21217 1.21676 0.98082 0.95652 0.98339 1.20743 0.96872 0.93229 1.01600 0.89371 0.94136 0.94073 0.86241 0.86428 0.86696 0.87001 0.86766 0.93153 0.91607 0.93720 0.90816 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.80 101.05 0.99 1.16 16 2 O -0.25 -5.55 7.03 -19.38 -0.14 -5.68 16 3 C 0.12 2.61 6.37 -39.59 -0.25 2.36 16 4 C -0.18 -3.22 8.94 -39.78 -0.36 -3.57 16 5 C -0.11 -1.77 9.76 -39.51 -0.39 -2.16 16 6 C -0.08 -1.45 5.74 -106.80 -0.61 -2.06 16 7 C -0.11 -1.76 9.77 -39.49 -0.39 -2.15 16 8 C -0.13 -1.90 9.95 -39.92 -0.40 -2.29 16 9 C -0.14 -2.21 9.59 -39.94 -0.38 -2.60 16 10 C -0.05 -0.95 5.68 -104.53 -0.59 -1.54 16 11 C -0.02 -0.47 5.66 -106.85 -0.60 -1.07 16 12 C -0.07 -1.69 5.49 -104.42 -0.57 -2.26 16 13 C 0.07 1.83 2.37 -92.89 -0.22 1.61 16 14 H 0.07 2.07 7.30 -51.93 -0.38 1.69 16 15 C -0.47 -12.59 5.62 -34.44 -0.19 -12.78 16 16 H 0.06 1.61 7.16 -52.49 -0.38 1.23 16 17 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 18 N -0.90 -25.63 12.79 55.43 0.71 -24.92 16 19 Si 0.89 21.37 29.54 -169.99 -5.02 16.34 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 23 C -0.10 -2.22 5.19 -26.70 -0.14 -2.36 16 24 C -0.09 -1.65 5.86 -27.89 -0.16 -1.81 16 25 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 26 H 0.04 0.59 7.64 -51.93 -0.40 0.19 16 27 H 0.04 0.60 7.63 -51.93 -0.40 0.20 16 28 H 0.12 1.77 6.22 -52.49 -0.33 1.45 16 29 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 31 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 34 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 35 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.06 0.99 8.08 -51.93 -0.42 0.57 16 LS Contribution 299.06 15.07 4.51 4.51 Total: -1.00 -29.67 299.06 -9.12 -38.79 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -4.81 Total: 0.79 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: -4.37 Total: -29.83 kcal Atomic # 7 Polarization: -25.63 SS G_CDS: 0.71 Total: -24.92 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.14 Total: -5.68 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.67 -9.12 -38.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078774250.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.550 kcal (2) G-P(sol) polarization free energy of solvation -29.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds