Wall clock time and date at job start Mon Mar 30 2020 07:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35884 * 117.00386 * 2 1 4 4 C 1.39862 * 119.58351 * 359.97438 * 3 2 1 5 5 C 1.35980 * 120.91335 * 180.02562 * 4 3 2 6 6 C 1.40590 * 119.76047 * 359.97438 * 5 4 3 7 7 C 1.40517 * 121.21975 * 180.02562 * 6 5 4 8 8 C 1.36113 * 119.69202 * 180.09071 * 7 6 5 9 9 C 1.39378 * 120.97394 * 0.02562 * 8 7 6 10 10 C 1.36067 * 120.95801 * 359.92285 * 9 8 7 11 11 C 1.40544 * 119.72817 * 0.06126 * 10 9 8 12 12 C 1.36536 * 119.58269 * 179.97438 * 3 2 1 13 13 C 1.50694 * 120.07316 * 359.94490 * 12 3 2 14 14 H 1.09004 * 109.50596 * 270.32189 * 13 12 3 15 15 C 1.50695 * 109.49160 * 30.38313 * 13 12 3 16 16 H 1.08000 * 119.99827 * 35.09742 * 15 13 12 17 17 C 1.37876 * 120.00238 * 215.09788 * 15 13 12 18 18 N 1.31514 * 119.99988 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 120.00143 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47021 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47032 * 119.99425 * 19 17 15 22 22 H 1.48491 * 109.47018 * 240.00083 * 19 17 15 23 23 C 1.53078 * 109.34620 * 150.34863 * 13 12 3 24 24 C 1.50703 * 120.03975 * 180.02562 * 10 9 8 25 25 H 1.08993 * 109.47683 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46880 * 299.99983 * 1 2 3 27 27 H 1.09000 * 109.46739 * 59.99116 * 1 2 3 28 28 H 1.07998 * 119.54253 * 0.02562 * 4 3 2 29 29 H 1.08000 * 120.11964 * 179.97438 * 5 4 3 30 30 H 1.07993 * 120.15560 * 0.10993 * 7 6 5 31 31 H 1.08002 * 119.50778 * 179.97438 * 8 7 6 32 32 H 1.07999 * 119.52233 * 179.97438 * 9 8 7 33 33 H 0.96996 * 120.00312 * 180.02562 * 18 17 15 34 34 H 1.09005 * 109.50783 * 178.41755 * 23 13 12 35 35 H 1.09000 * 109.51053 * 298.51252 * 23 13 12 36 36 H 1.09002 * 109.44256 * 89.54891 * 24 10 9 37 37 H 1.08992 * 109.52872 * 329.48372 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2107 0.0000 4 6 1.2758 2.3782 -0.0005 5 6 1.8650 3.6037 -0.0011 6 6 3.2673 3.7039 -0.0005 7 6 3.9081 4.9544 -0.0005 8 6 5.2679 5.0152 -0.0019 9 6 6.0379 3.8534 -0.0038 10 6 5.4519 2.6254 -0.0028 11 6 4.0502 2.5220 -0.0011 12 6 3.4100 1.2721 0.0005 13 6 4.2230 0.0033 0.0024 14 1 4.4141 -0.3050 1.0303 15 6 3.4628 -1.0820 -0.7152 16 1 2.8450 -0.8364 -1.5663 17 6 3.5560 -2.3887 -0.2853 18 7 4.3079 -2.6879 0.7514 19 14 2.6142 -3.7343 -1.1752 20 1 1.8473 -3.1408 -2.3000 21 1 3.5697 -4.7408 -1.7036 22 1 1.6764 -4.3907 -0.2293 23 6 5.5538 0.2528 -0.7119 24 6 6.3044 1.3826 -0.0044 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5140 -0.8899 28 1 0.1983 2.3053 -0.0005 29 1 1.2578 4.4969 -0.0019 30 1 3.3245 5.8631 0.0008 31 1 5.7574 5.9779 -0.0023 32 1 7.1152 3.9289 -0.0053 33 1 4.3737 -3.6072 1.0537 34 1 6.1559 -0.6556 -0.6875 35 1 5.3638 0.5359 -1.7472 36 1 6.5181 1.0880 1.0231 37 1 7.2393 1.5828 -0.5276 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078774250.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:28 Heat of formation + Delta-G solvation = -17.676971 kcal Electronic energy + Delta-G solvation = -20566.289397 eV Core-core repulsion = 17658.409444 eV Total energy + Delta-G solvation = -2907.879953 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.77777 -39.60391 -37.30236 -36.38320 -34.39939 -31.78313 -31.27578 -30.52449 -28.15525 -27.49658 -25.24742 -23.88464 -23.13854 -23.02040 -19.94866 -19.02204 -18.61010 -17.51630 -17.45653 -16.56647 -16.22881 -16.07853 -15.73198 -15.32004 -14.73136 -14.34893 -14.14969 -13.94473 -13.81953 -13.78629 -13.49725 -12.98480 -12.81557 -12.64105 -12.47110 -12.34109 -12.18444 -12.06961 -11.83959 -11.64315 -11.20421 -10.93940 -10.71003 -10.44960 -10.09315 -9.13611 -8.22745 -7.98429 -6.03206 -0.19769 0.29007 1.28875 1.38544 1.40314 1.52182 2.24779 2.48894 2.77970 3.30681 3.36294 3.80604 3.97172 4.06675 4.16629 4.37087 4.41521 4.44748 4.48197 4.48964 4.53147 4.62510 4.69101 4.74206 4.77588 5.04318 5.07076 5.17595 5.26489 5.34280 5.41952 5.42740 5.53626 5.69591 5.73728 5.78359 5.89324 5.94470 6.14458 6.26255 6.44728 6.93657 7.01812 7.56187 9.07249 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.021473 B = 0.007995 C = 0.006063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.658325 B = 3501.279460 C = 4617.254458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.294 6.294 3 C 0.107 3.893 4 C -0.193 4.193 5 C -0.084 4.084 6 C -0.101 4.101 7 C -0.104 4.104 8 C -0.129 4.129 9 C -0.118 4.118 10 C -0.092 4.092 11 C -0.041 4.041 12 C -0.128 4.128 13 C 0.076 3.924 14 H 0.025 0.975 15 C -0.462 4.462 16 H 0.044 0.956 17 C 0.013 3.987 18 N -0.934 5.934 19 Si 0.946 3.054 20 H -0.268 1.268 21 H -0.284 1.284 22 H -0.282 1.282 23 C -0.092 4.092 24 C -0.077 4.077 25 H 0.092 0.908 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.150 0.850 29 H 0.164 0.836 30 H 0.156 0.844 31 H 0.155 0.845 32 H 0.142 0.858 33 H 0.257 0.743 34 H 0.040 0.960 35 H 0.037 0.963 36 H 0.062 0.938 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.287 14.916 -1.368 15.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.207 6.207 3 C 0.062 3.938 4 C -0.211 4.211 5 C -0.102 4.102 6 C -0.101 4.101 7 C -0.122 4.122 8 C -0.147 4.147 9 C -0.136 4.136 10 C -0.092 4.092 11 C -0.041 4.041 12 C -0.129 4.129 13 C 0.058 3.942 14 H 0.043 0.957 15 C -0.500 4.500 16 H 0.062 0.938 17 C -0.183 4.183 18 N -0.576 5.576 19 Si 0.772 3.228 20 H -0.193 1.193 21 H -0.210 1.210 22 H -0.208 1.208 23 C -0.130 4.130 24 C -0.113 4.113 25 H 0.111 0.889 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.168 0.832 29 H 0.182 0.818 30 H 0.174 0.826 31 H 0.172 0.828 32 H 0.160 0.840 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.081 0.919 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.171 14.558 -1.278 14.954 hybrid contribution -0.674 -1.461 -0.206 1.622 sum -3.845 13.097 -1.484 13.730 Atomic orbital electron populations 1.23260 0.80503 1.03819 1.01474 1.86954 1.20165 1.25714 1.87855 1.18869 0.92131 0.85328 0.97497 1.21313 1.00896 0.91984 1.06892 1.21125 0.93104 0.97842 0.98098 1.18376 0.94147 0.93313 1.04310 1.21256 0.95433 0.95983 0.99501 1.21102 0.93944 0.98859 1.00756 1.20971 1.01060 0.91243 1.00354 1.19871 0.92471 0.96175 1.00663 1.17948 0.93884 0.92083 1.00184 1.19964 0.92516 0.95750 1.04637 1.17651 0.91447 0.89024 0.96085 0.95734 1.21005 1.24544 0.91715 1.12755 0.93801 1.25550 0.96359 1.00690 0.95695 1.70054 1.41720 1.18859 1.26955 0.85687 0.78789 0.79492 0.78788 1.19272 1.21035 1.20761 1.21447 0.97285 0.96201 0.98075 1.20575 0.97656 0.92410 1.00708 0.88948 0.92015 0.91995 0.83236 0.81813 0.82640 0.82786 0.84022 0.93395 0.94119 0.94426 0.91949 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.15 9.80 113.37 1.11 1.26 16 2 O -0.29 -13.58 7.03 -92.25 -0.65 -14.23 16 3 C 0.11 4.74 6.37 22.27 0.14 4.88 16 4 C -0.19 -6.49 8.94 22.14 0.20 -6.29 16 5 C -0.08 -2.49 9.76 22.32 0.22 -2.27 16 6 C -0.10 -3.40 5.74 -21.28 -0.12 -3.52 16 7 C -0.10 -2.66 9.77 22.33 0.22 -2.44 16 8 C -0.13 -3.11 9.95 22.05 0.22 -2.89 16 9 C -0.12 -3.42 9.59 22.04 0.21 -3.21 16 10 C -0.09 -3.44 5.68 -19.81 -0.11 -3.55 16 11 C -0.04 -1.69 5.66 -21.31 -0.12 -1.81 16 12 C -0.13 -6.13 5.49 -19.73 -0.11 -6.24 16 13 C 0.08 4.13 2.37 -12.26 -0.03 4.10 16 14 H 0.02 1.53 7.30 -2.38 -0.02 1.51 16 15 C -0.46 -26.56 5.62 25.60 0.14 -26.41 16 16 H 0.04 2.58 7.16 -2.91 -0.02 2.56 16 17 C 0.01 0.78 5.46 84.65 0.46 1.24 16 18 N -0.93 -57.03 12.79 21.45 0.27 -56.76 16 19 Si 0.95 45.79 29.54 68.60 2.03 47.82 16 20 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 22 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 23 C -0.09 -4.42 5.19 30.62 0.16 -4.26 16 24 C -0.08 -2.99 5.86 29.85 0.17 -2.82 16 25 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 26 H 0.06 1.71 7.64 -2.39 -0.02 1.69 16 27 H 0.06 1.72 7.63 -2.39 -0.02 1.70 16 28 H 0.15 3.97 6.22 -2.91 -0.02 3.95 16 29 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 30 H 0.16 2.72 8.06 -2.91 -0.02 2.69 16 31 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 32 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 33 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 34 H 0.04 2.07 8.14 -2.38 -0.02 2.05 16 35 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.09 2.88 8.08 -2.39 -0.02 2.86 16 Total: -1.00 -70.98 299.06 5.48 -65.49 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 1.07 Total: 11.91 kcal Atomic # 6 Polarization: -57.00 SS G_CDS: 2.76 Total: -54.23 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: 0.27 Total: -56.76 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.65 Total: -14.23 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -70.98 5.48 -65.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078774250.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.816 kcal (2) G-P(sol) polarization free energy of solvation -70.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds