Wall clock time and date at job start Mon Mar 30 2020 07:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38233 * 120.00248 * 2 1 4 4 C 1.38236 * 120.00078 * 179.97438 * 3 2 1 5 5 C 1.38231 * 119.99855 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99774 * 180.02562 * 5 4 3 7 7 O 1.42903 * 109.47155 * 5.65057 * 6 5 4 8 8 C 1.50699 * 109.46934 * 125.64589 * 6 5 4 9 9 H 1.07998 * 120.00237 * 3.84772 * 8 6 5 10 10 C 1.37878 * 120.00083 * 183.84484 * 8 6 5 11 11 N 1.31514 * 119.99842 * 1.78969 * 10 8 6 12 12 Si 1.86800 * 120.00087 * 182.06863 * 10 8 6 13 13 H 1.48508 * 109.47102 * 179.72180 * 12 10 8 14 14 H 1.48496 * 109.47040 * 299.72149 * 12 10 8 15 15 H 1.48495 * 109.47311 * 59.72652 * 12 10 8 16 16 C 1.50696 * 109.47537 * 245.64659 * 6 5 4 17 17 C 1.38240 * 119.99879 * 281.99414 * 16 6 5 18 18 C 1.38234 * 119.99322 * 179.78113 * 17 16 6 19 19 C 1.38226 * 120.00770 * 0.44727 * 18 17 16 20 20 C 1.38242 * 119.99793 * 359.80495 * 19 18 17 21 21 C 1.38230 * 119.99792 * 359.97438 * 20 19 18 22 22 C 1.38238 * 120.00157 * 0.27362 * 5 4 3 23 23 C 1.38231 * 119.99972 * 359.51461 * 22 5 4 24 24 H 1.09005 * 109.47149 * 90.00335 * 1 2 3 25 25 H 1.09003 * 109.47226 * 209.99858 * 1 2 3 26 26 H 1.08989 * 109.47240 * 330.00068 * 1 2 3 27 27 H 1.08002 * 119.99509 * 359.97438 * 3 2 1 28 28 H 1.07997 * 119.99399 * 179.97438 * 4 3 2 29 29 H 0.96700 * 113.99766 * 299.99606 * 7 6 5 30 30 H 0.97002 * 120.00096 * 355.17928 * 11 10 8 31 31 H 1.07993 * 119.99830 * 359.97438 * 17 16 6 32 32 H 1.08000 * 119.99527 * 180.27374 * 18 17 16 33 33 H 1.08003 * 120.00611 * 179.83312 * 19 18 17 34 34 H 1.07997 * 120.00282 * 180.02562 * 20 19 18 35 35 H 1.08001 * 119.99873 * 179.97438 * 21 20 19 36 36 H 1.08005 * 119.99624 * 179.73159 * 22 5 4 37 37 H 1.07997 * 119.99840 * 180.27558 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 -0.0001 0.0016 6 6 5.7787 -0.0001 0.0028 7 8 6.2550 1.3407 0.1352 8 6 6.2801 -0.8276 1.1581 9 1 5.5798 -1.3563 1.7878 10 6 7.6329 -0.9098 1.4114 11 7 8.4833 -0.2380 0.6664 12 14 8.2583 -1.9816 2.8077 13 1 9.7401 -1.9035 2.8662 14 1 7.6864 -1.5043 4.0924 15 1 7.8457 -3.3889 2.5746 16 6 6.2821 -0.5866 -1.2909 17 6 6.2781 -1.9564 -1.4766 18 6 6.7357 -2.4940 -2.6651 19 6 7.2058 -1.6625 -3.6642 20 6 7.2147 -0.2929 -3.4765 21 6 6.7529 0.2450 -2.2898 22 6 3.5805 -1.1972 -0.0036 23 6 2.1981 -1.1972 0.0003 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5138 27 1 1.6582 2.1324 -0.0004 28 1 4.1205 2.1324 0.0001 29 1 5.9702 1.9312 -0.5757 30 1 8.1660 0.2592 -0.1036 31 1 5.9146 -2.6063 -0.6944 32 1 6.7285 -3.5640 -2.8119 33 1 7.5659 -2.0827 -4.5917 34 1 7.5816 0.3568 -4.2572 35 1 6.7602 1.3149 -2.1430 36 1 4.1205 -2.1326 -0.0071 37 1 1.6582 -2.1325 0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082303040.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:47 Heat of formation + Delta-G solvation = -6.473997 kcal Electronic energy + Delta-G solvation = -20364.289046 eV Core-core repulsion = 17456.894890 eV Total energy + Delta-G solvation = -2907.394156 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.59640 -38.16121 -36.01722 -32.65387 -32.23824 -30.51592 -30.04730 -29.96008 -27.50478 -25.18376 -23.04181 -22.13959 -21.49236 -20.94702 -19.72523 -17.23322 -16.90301 -16.27275 -15.03551 -14.65990 -14.46521 -14.08401 -13.85184 -13.72055 -13.50696 -13.19441 -12.96092 -12.58396 -12.53877 -12.08017 -11.78619 -11.51047 -11.29661 -11.27424 -10.80930 -10.65500 -10.56713 -10.38432 -10.25146 -10.09879 -9.08073 -9.04939 -8.48827 -8.36571 -8.15110 -7.80052 -7.74358 -6.32225 -4.19531 1.91086 1.96318 2.16483 2.21966 3.41449 3.43868 3.61918 4.31164 4.51192 4.59509 5.19432 5.22007 5.25788 5.47702 5.54790 5.58255 5.60900 5.63128 5.73480 5.75125 5.88830 5.97776 6.04333 6.14036 6.27713 6.31790 6.40611 6.56826 6.65947 6.73188 6.81276 7.01418 7.05354 7.18640 7.21656 7.29802 7.43343 7.59038 7.77563 8.05717 8.33056 8.80137 8.93527 9.64944 11.05843 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.014778 B = 0.008383 C = 0.006609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.208313 B = 3339.480464 C = 4235.756787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.113 4.113 3 C -0.124 4.124 4 C -0.123 4.123 5 C -0.063 4.063 6 C 0.305 3.695 7 O -0.546 6.546 8 C -0.593 4.593 9 H 0.061 0.939 10 C 0.042 3.958 11 N -0.877 5.877 12 Si 1.062 2.938 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.286 1.286 16 C -0.055 4.055 17 C -0.087 4.087 18 C -0.131 4.131 19 C -0.143 4.143 20 C -0.127 4.127 21 C -0.129 4.129 22 C -0.100 4.100 23 C -0.126 4.126 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.112 0.888 28 H 0.119 0.881 29 H 0.330 0.670 30 H 0.289 0.711 31 H 0.123 0.877 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.124 0.876 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.526 -0.935 -5.506 11.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.113 4.113 3 C -0.142 4.142 4 C -0.141 4.141 5 C -0.063 4.063 6 C 0.265 3.735 7 O -0.350 6.350 8 C -0.629 4.629 9 H 0.079 0.921 10 C -0.170 4.170 11 N -0.511 5.511 12 Si 0.889 3.111 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.212 1.212 16 C -0.056 4.056 17 C -0.105 4.105 18 C -0.149 4.149 19 C -0.161 4.161 20 C -0.145 4.145 21 C -0.147 4.147 22 C -0.118 4.118 23 C -0.144 4.144 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.130 0.870 28 H 0.137 0.863 29 H 0.175 0.825 30 H 0.103 0.897 31 H 0.141 0.859 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.142 0.858 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.874 -1.616 -4.170 9.056 hybrid contribution -1.505 0.727 -1.267 2.097 sum -9.379 -0.889 -5.436 10.877 Atomic orbital electron populations 1.20691 0.92036 1.02036 1.01526 1.19733 0.95345 0.93457 1.02743 1.20850 0.94121 0.96891 1.02337 1.20973 0.93732 0.98241 1.01143 1.20793 0.97627 0.92775 0.95113 1.16938 0.84262 0.80785 0.91509 1.87142 1.76787 1.21403 1.49684 1.21574 0.94506 1.31004 1.15850 0.92075 1.25723 0.93173 0.96796 1.01271 1.70569 1.38456 1.26437 1.15670 0.83668 0.76461 0.75600 0.75321 1.20674 1.21323 1.21239 1.21035 0.95173 0.94141 0.95241 1.20966 0.98478 0.95110 0.95928 1.21054 1.00593 0.98882 0.94406 1.20871 1.02521 0.93800 0.98913 1.20904 1.01197 0.95062 0.97332 1.20947 1.00766 0.99425 0.93570 1.21047 0.93285 0.98500 0.98974 1.20946 0.94335 0.96917 1.02219 0.91942 0.92106 0.92160 0.87031 0.86276 0.82509 0.89749 0.85874 0.87172 0.87407 0.87326 0.87118 0.85799 0.86930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.01 36.01 0.36 -0.90 16 2 C -0.11 -1.78 5.88 -104.62 -0.62 -2.40 16 3 C -0.12 -2.05 9.70 -39.58 -0.38 -2.44 16 4 C -0.12 -2.34 9.23 -39.58 -0.37 -2.71 16 5 C -0.06 -1.33 4.74 -104.62 -0.50 -1.83 16 6 C 0.30 7.25 0.68 -94.08 -0.06 7.19 16 7 O -0.55 -13.28 10.01 -35.23 -0.35 -13.63 16 8 C -0.59 -15.89 6.64 -34.44 -0.23 -16.12 16 9 H 0.06 1.65 7.38 -52.49 -0.39 1.26 16 10 C 0.04 1.15 5.24 -17.82 -0.09 1.06 16 11 N -0.88 -25.94 13.27 55.43 0.74 -25.21 16 12 Si 1.06 24.78 29.90 -169.99 -5.08 19.70 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 16 C -0.06 -1.24 3.30 -104.62 -0.35 -1.58 16 17 C -0.09 -1.86 8.27 -39.58 -0.33 -2.19 16 18 C -0.13 -2.47 10.05 -39.59 -0.40 -2.87 16 19 C -0.14 -2.55 10.05 -39.58 -0.40 -2.94 16 20 C -0.13 -2.34 10.05 -39.58 -0.40 -2.74 16 21 C -0.13 -2.67 8.65 -39.58 -0.34 -3.01 16 22 C -0.10 -1.97 8.39 -39.58 -0.33 -2.30 16 23 C -0.13 -2.13 9.70 -39.58 -0.38 -2.52 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 26 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 27 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 28 H 0.12 2.14 6.47 -52.49 -0.34 1.80 16 29 H 0.33 6.60 6.22 45.56 0.28 6.88 16 30 H 0.29 8.44 4.85 -40.82 -0.20 8.24 16 31 H 0.12 2.65 6.18 -52.49 -0.32 2.33 16 32 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 34 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 35 H 0.11 2.13 6.36 -52.49 -0.33 1.80 16 36 H 0.12 2.44 6.17 -52.48 -0.32 2.11 16 37 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 303.30 15.07 4.57 4.57 Total: -1.00 -31.18 303.30 -8.74 -39.92 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -3.80 Total: 12.95 kcal Atomic # 6 Polarization: -33.49 SS G_CDS: -4.81 Total: -38.30 kcal Atomic # 7 Polarization: -25.94 SS G_CDS: 0.74 Total: -25.21 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -0.35 Total: -13.63 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -5.08 Total: 19.70 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.18 -8.74 -39.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082303040.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.443 kcal (2) G-P(sol) polarization free energy of solvation -31.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds