Wall clock time and date at job start Mon Mar 30 2020 07:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38233 * 120.00248 * 2 1 4 4 C 1.38236 * 120.00078 * 179.97438 * 3 2 1 5 5 C 1.38231 * 119.99855 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99774 * 180.02562 * 5 4 3 7 7 O 1.42903 * 109.47155 * 5.65057 * 6 5 4 8 8 C 1.50699 * 109.46934 * 125.64589 * 6 5 4 9 9 H 1.07998 * 120.00237 * 3.84772 * 8 6 5 10 10 C 1.37878 * 120.00083 * 183.84484 * 8 6 5 11 11 N 1.31514 * 119.99842 * 1.78969 * 10 8 6 12 12 Si 1.86800 * 120.00087 * 182.06863 * 10 8 6 13 13 H 1.48508 * 109.47102 * 179.72180 * 12 10 8 14 14 H 1.48496 * 109.47040 * 299.72149 * 12 10 8 15 15 H 1.48495 * 109.47311 * 59.72652 * 12 10 8 16 16 C 1.50696 * 109.47537 * 245.64659 * 6 5 4 17 17 C 1.38240 * 119.99879 * 281.99414 * 16 6 5 18 18 C 1.38234 * 119.99322 * 179.78113 * 17 16 6 19 19 C 1.38226 * 120.00770 * 0.44727 * 18 17 16 20 20 C 1.38242 * 119.99793 * 359.80495 * 19 18 17 21 21 C 1.38230 * 119.99792 * 359.97438 * 20 19 18 22 22 C 1.38238 * 120.00157 * 0.27362 * 5 4 3 23 23 C 1.38231 * 119.99972 * 359.51461 * 22 5 4 24 24 H 1.09005 * 109.47149 * 90.00335 * 1 2 3 25 25 H 1.09003 * 109.47226 * 209.99858 * 1 2 3 26 26 H 1.08989 * 109.47240 * 330.00068 * 1 2 3 27 27 H 1.08002 * 119.99509 * 359.97438 * 3 2 1 28 28 H 1.07997 * 119.99399 * 179.97438 * 4 3 2 29 29 H 0.96700 * 113.99766 * 299.99606 * 7 6 5 30 30 H 0.97002 * 120.00096 * 355.17928 * 11 10 8 31 31 H 1.07993 * 119.99830 * 359.97438 * 17 16 6 32 32 H 1.08000 * 119.99527 * 180.27374 * 18 17 16 33 33 H 1.08003 * 120.00611 * 179.83312 * 19 18 17 34 34 H 1.07997 * 120.00282 * 180.02562 * 20 19 18 35 35 H 1.08001 * 119.99873 * 179.97438 * 21 20 19 36 36 H 1.08005 * 119.99624 * 179.73159 * 22 5 4 37 37 H 1.07997 * 119.99840 * 180.27558 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 -0.0001 0.0016 6 6 5.7787 -0.0001 0.0028 7 8 6.2550 1.3407 0.1352 8 6 6.2801 -0.8276 1.1581 9 1 5.5798 -1.3563 1.7878 10 6 7.6329 -0.9098 1.4114 11 7 8.4833 -0.2380 0.6664 12 14 8.2583 -1.9816 2.8077 13 1 9.7401 -1.9035 2.8662 14 1 7.6864 -1.5043 4.0924 15 1 7.8457 -3.3889 2.5746 16 6 6.2821 -0.5866 -1.2909 17 6 6.2781 -1.9564 -1.4766 18 6 6.7357 -2.4940 -2.6651 19 6 7.2058 -1.6625 -3.6642 20 6 7.2147 -0.2929 -3.4765 21 6 6.7529 0.2450 -2.2898 22 6 3.5805 -1.1972 -0.0036 23 6 2.1981 -1.1972 0.0003 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5138 27 1 1.6582 2.1324 -0.0004 28 1 4.1205 2.1324 0.0001 29 1 5.9702 1.9312 -0.5757 30 1 8.1660 0.2592 -0.1036 31 1 5.9146 -2.6063 -0.6944 32 1 6.7285 -3.5640 -2.8119 33 1 7.5659 -2.0827 -4.5917 34 1 7.5816 0.3568 -4.2572 35 1 6.7602 1.3149 -2.1430 36 1 4.1205 -2.1326 -0.0071 37 1 1.6582 -2.1325 0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082303040.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:47 Heat of formation + Delta-G solvation = -23.770718 kcal Electronic energy + Delta-G solvation = -20365.039088 eV Core-core repulsion = 17456.894890 eV Total energy + Delta-G solvation = -2908.144198 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.14568 -39.58630 -37.67700 -34.57426 -33.72088 -31.99219 -31.57206 -31.42893 -28.98836 -26.80474 -24.74574 -23.59047 -22.98444 -22.39126 -21.32120 -19.08191 -18.67440 -17.77265 -16.51931 -16.17924 -15.85495 -15.69200 -15.49972 -15.29460 -14.86758 -14.52441 -14.36013 -14.20732 -14.04127 -13.46343 -13.22491 -13.00542 -12.86227 -12.70415 -12.61800 -12.22648 -12.12923 -11.95791 -11.81488 -11.72744 -10.88427 -10.85350 -10.48091 -9.77288 -9.68249 -9.39175 -9.21511 -8.43720 -6.32181 0.50044 0.55757 0.63849 0.71429 1.50592 1.57529 1.76150 2.56627 2.92496 3.05377 3.21520 3.89472 3.99315 4.05312 4.13170 4.16609 4.22223 4.24916 4.36261 4.49706 4.60344 4.69459 4.81581 4.87347 4.88843 4.92410 5.01742 5.20247 5.22521 5.29804 5.33813 5.58390 5.64866 5.68677 5.72532 5.74950 5.88684 6.16355 6.19382 6.23209 6.33320 6.74546 7.15375 7.60754 8.92600 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.014778 B = 0.008383 C = 0.006609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.208313 B = 3339.480464 C = 4235.756787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.107 4.107 3 C -0.124 4.124 4 C -0.139 4.139 5 C -0.094 4.094 6 C 0.299 3.701 7 O -0.569 6.569 8 C -0.598 4.598 9 H 0.047 0.953 10 C -0.003 4.003 11 N -0.913 5.913 12 Si 1.099 2.901 13 H -0.285 1.285 14 H -0.279 1.279 15 H -0.266 1.266 16 C -0.072 4.072 17 C -0.113 4.113 18 C -0.133 4.133 19 C -0.140 4.140 20 C -0.127 4.127 21 C -0.151 4.151 22 C -0.118 4.118 23 C -0.128 4.128 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.143 0.857 28 H 0.119 0.881 29 H 0.345 0.655 30 H 0.281 0.719 31 H 0.108 0.892 32 H 0.139 0.861 33 H 0.148 0.852 34 H 0.141 0.859 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.323 -1.429 -6.681 13.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.107 4.107 3 C -0.141 4.141 4 C -0.157 4.157 5 C -0.095 4.095 6 C 0.260 3.740 7 O -0.374 6.374 8 C -0.635 4.635 9 H 0.065 0.935 10 C -0.208 4.208 11 N -0.549 5.549 12 Si 0.922 3.078 13 H -0.211 1.211 14 H -0.204 1.204 15 H -0.191 1.191 16 C -0.073 4.073 17 C -0.131 4.131 18 C -0.151 4.151 19 C -0.158 4.158 20 C -0.144 4.144 21 C -0.169 4.169 22 C -0.137 4.137 23 C -0.146 4.146 24 H 0.098 0.902 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.161 0.839 28 H 0.137 0.863 29 H 0.192 0.808 30 H 0.094 0.906 31 H 0.126 0.874 32 H 0.157 0.843 33 H 0.165 0.835 34 H 0.159 0.841 35 H 0.131 0.869 36 H 0.128 0.872 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.699 -2.112 -5.352 11.278 hybrid contribution -1.075 0.907 -0.965 1.705 sum -10.774 -1.205 -6.317 12.547 Atomic orbital electron populations 1.20766 0.88587 1.03579 1.03067 1.20252 0.97776 0.92515 1.00135 1.21219 0.93101 0.98766 1.01042 1.21113 0.95183 0.97489 1.01872 1.20714 0.96498 0.94305 0.97947 1.16861 0.86045 0.79818 0.91247 1.87014 1.77373 1.22244 1.50800 1.21821 0.94264 1.31107 1.16264 0.93456 1.26877 0.93894 0.97281 1.02755 1.70652 1.38864 1.28579 1.16784 0.83193 0.75717 0.75442 0.73452 1.21091 1.20430 1.19144 1.20908 0.96381 0.94784 0.95258 1.21006 1.00193 0.94805 0.97088 1.21413 0.99486 1.00682 0.93533 1.21337 1.01079 0.93432 0.99931 1.21316 0.99914 0.96149 0.97063 1.21129 1.01629 0.99626 0.94488 1.21059 0.94755 0.97507 1.00333 1.21268 0.93207 0.98860 1.01276 0.90218 0.90724 0.90573 0.83922 0.86280 0.80806 0.90605 0.87396 0.84344 0.83451 0.84101 0.86885 0.87164 0.84239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.03 10.01 71.24 0.71 -1.31 16 2 C -0.11 -3.11 5.88 -19.86 -0.12 -3.23 16 3 C -0.12 -3.87 9.70 22.27 0.22 -3.65 16 4 C -0.14 -5.33 9.23 22.27 0.21 -5.13 16 5 C -0.09 -4.14 4.74 -19.87 -0.09 -4.24 16 6 C 0.30 14.88 0.68 -13.03 -0.01 14.87 16 7 O -0.57 -28.95 10.01 -148.98 -1.49 -30.44 16 8 C -0.60 -33.44 6.64 25.60 0.17 -33.27 16 9 H 0.05 2.68 7.38 -2.91 -0.02 2.66 16 10 C 0.00 -0.19 5.24 84.65 0.44 0.26 16 11 N -0.91 -55.80 13.27 21.45 0.28 -55.52 16 12 Si 1.10 51.12 29.90 68.60 2.05 53.17 16 13 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 14 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 15 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 16 C -0.07 -3.37 3.30 -19.87 -0.07 -3.43 16 17 C -0.11 -4.98 8.27 22.27 0.18 -4.79 16 18 C -0.13 -4.89 10.05 22.27 0.22 -4.67 16 19 C -0.14 -4.65 10.05 22.27 0.22 -4.43 16 20 C -0.13 -4.48 10.05 22.27 0.22 -4.26 16 21 C -0.15 -6.32 8.65 22.27 0.19 -6.12 16 22 C -0.12 -4.78 8.39 22.27 0.19 -4.59 16 23 C -0.13 -4.18 9.70 22.27 0.22 -3.96 16 24 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 25 H 0.07 1.29 8.09 -2.39 -0.02 1.27 16 26 H 0.08 1.29 8.08 -2.39 -0.02 1.27 16 27 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 28 H 0.12 4.40 6.47 -2.91 -0.02 4.39 16 29 H 0.35 14.60 6.22 -74.06 -0.46 14.14 16 30 H 0.28 17.09 4.85 -92.71 -0.45 16.64 16 31 H 0.11 4.93 6.18 -2.91 -0.02 4.91 16 32 H 0.14 4.15 8.06 -2.91 -0.02 4.12 16 33 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 34 H 0.14 3.98 8.06 -2.91 -0.02 3.95 16 35 H 0.11 4.50 6.36 -2.91 -0.02 4.48 16 36 H 0.11 4.60 6.17 -2.91 -0.02 4.58 16 37 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -69.92 303.30 4.70 -65.22 By element: Atomic # 1 Polarization: 38.58 SS G_CDS: 0.94 Total: 39.52 kcal Atomic # 6 Polarization: -74.87 SS G_CDS: 2.91 Total: -71.96 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: 0.28 Total: -55.52 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -1.49 Total: -30.44 kcal Atomic # 14 Polarization: 51.12 SS G_CDS: 2.05 Total: 53.17 kcal Total: -69.92 4.70 -65.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082303040.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.450 kcal (2) G-P(sol) polarization free energy of solvation -69.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds