Wall clock time and date at job start Mon Mar 30 2020 07:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38237 * 119.99823 * 2 1 4 4 C 1.38226 * 119.99919 * 180.02562 * 3 2 1 5 5 C 1.38237 * 120.00224 * 359.95288 * 4 3 2 6 6 C 1.50697 * 120.00197 * 180.02562 * 5 4 3 7 7 O 1.42908 * 109.47223 * 350.50350 * 6 5 4 8 8 C 1.50701 * 109.47367 * 230.50097 * 6 5 4 9 9 H 1.08004 * 119.99339 * 5.27602 * 8 6 5 10 10 C 1.37879 * 120.00250 * 185.27508 * 8 6 5 11 11 N 1.31510 * 119.99874 * 175.86022 * 10 8 6 12 12 Si 1.86801 * 119.99846 * 355.86314 * 10 8 6 13 13 H 1.48494 * 109.47335 * 85.40287 * 12 10 8 14 14 H 1.48503 * 109.46761 * 205.40406 * 12 10 8 15 15 H 1.48499 * 109.46924 * 325.40130 * 12 10 8 16 16 C 1.50703 * 109.47237 * 110.50184 * 6 5 4 17 17 C 1.38232 * 119.99994 * 74.87290 * 16 6 5 18 18 C 1.38236 * 120.00076 * 180.02562 * 17 16 6 19 19 C 1.38232 * 120.00064 * 359.95460 * 18 17 16 20 20 C 1.38236 * 119.99801 * 0.27296 * 19 18 17 21 21 C 1.38233 * 119.99994 * 359.53832 * 20 19 18 22 22 C 1.38241 * 119.99901 * 0.27508 * 5 4 3 23 23 C 1.38231 * 119.99685 * 359.51655 * 22 5 4 24 24 H 1.09000 * 109.47211 * 90.00556 * 1 2 3 25 25 H 1.09000 * 109.46798 * 209.99833 * 1 2 3 26 26 H 1.08995 * 109.47329 * 330.00111 * 1 2 3 27 27 H 1.08004 * 119.99956 * 359.96992 * 3 2 1 28 28 H 1.08007 * 120.00173 * 179.97438 * 4 3 2 29 29 H 0.96703 * 113.99700 * 59.99956 * 7 6 5 30 30 H 0.97002 * 120.00033 * 180.02562 * 11 10 8 31 31 H 1.08000 * 120.00226 * 359.97438 * 17 16 6 32 32 H 1.07998 * 119.99868 * 179.97438 * 18 17 16 33 33 H 1.08001 * 120.00146 * 180.02562 * 19 18 17 34 34 H 1.08000 * 119.99758 * 179.72819 * 20 19 18 35 35 H 1.08009 * 119.99899 * 180.20543 * 21 20 19 36 36 H 1.07996 * 119.99719 * 179.73048 * 22 5 4 37 37 H 1.07999 * 119.99869 * 180.25043 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5804 1.1972 -0.0005 5 6 4.2717 0.0001 -0.0001 6 6 5.7787 0.0001 -0.0001 7 8 6.2550 1.3289 -0.2229 8 6 6.2811 -0.9040 -1.0961 9 1 5.5829 -1.3592 -1.7830 10 6 7.6319 -1.1501 -1.2219 11 7 8.0637 -2.0021 -2.1258 12 14 8.8486 -0.2732 -0.1082 13 1 8.9839 -1.0243 1.1656 14 1 10.1702 -0.1980 -0.7813 15 1 8.3590 1.0996 0.1761 16 6 6.2810 -0.4970 1.3309 17 6 6.2169 -1.8440 1.6346 18 6 6.6773 -2.3000 2.8557 19 6 7.2026 -1.4090 3.7728 20 6 7.2623 -0.0613 3.4710 21 6 6.8056 0.3941 2.2484 22 6 3.5805 -1.1971 -0.0048 23 6 2.1982 -1.1971 0.0000 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.6581 2.1325 -0.0005 28 1 4.1205 2.1326 -0.0010 29 1 5.9696 1.9663 0.4460 30 1 9.0140 -2.1755 -2.2141 31 1 5.8064 -2.5402 0.9182 32 1 6.6268 -3.3523 3.0931 33 1 7.5626 -1.7653 4.7267 34 1 7.6687 0.6354 4.1893 35 1 6.8554 1.4467 2.0113 36 1 4.1206 -2.1323 -0.0089 37 1 1.6583 -2.1325 0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082303042.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:51 Heat of formation + Delta-G solvation = 9.116390 kcal Electronic energy + Delta-G solvation = -20461.913240 eV Core-core repulsion = 17555.195134 eV Total energy + Delta-G solvation = -2906.718106 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.71970 -38.27131 -36.08666 -32.81327 -32.20136 -30.77186 -30.20709 -30.09585 -27.69249 -25.76103 -22.90640 -22.18893 -21.62551 -21.08836 -19.57176 -17.17839 -17.01355 -16.14014 -15.10877 -14.82375 -14.50302 -14.36905 -14.13409 -13.83722 -13.50360 -13.11717 -12.98126 -12.71752 -12.48532 -12.22160 -12.10509 -11.68668 -11.56600 -11.22636 -10.96708 -10.58413 -10.48064 -10.39184 -10.22499 -9.99684 -9.66810 -8.83452 -8.59572 -8.36511 -8.25571 -7.90534 -7.82438 -6.19201 -4.30974 1.86242 1.96507 2.02260 2.06529 3.42533 3.50928 3.65624 4.30925 4.42100 4.52681 4.99465 5.21960 5.25395 5.40849 5.44627 5.49791 5.52688 5.60484 5.65364 5.75115 5.84556 5.98343 5.98978 6.07648 6.18264 6.25737 6.29882 6.54820 6.57104 6.63112 6.69311 6.96819 7.04907 7.05801 7.10488 7.15231 7.31004 7.57801 7.59966 7.69754 8.33565 8.66448 8.86223 9.43880 10.88810 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.018726 B = 0.008170 C = 0.007068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.897038 B = 3426.497471 C = 3960.404739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.110 4.110 3 C -0.126 4.126 4 C -0.121 4.121 5 C -0.063 4.063 6 C 0.290 3.710 7 O -0.550 6.550 8 C -0.505 4.505 9 H 0.085 0.915 10 C 0.096 3.904 11 N -0.883 5.883 12 Si 0.868 3.132 13 H -0.273 1.273 14 H -0.304 1.304 15 H -0.231 1.231 16 C -0.080 4.080 17 C -0.081 4.081 18 C -0.130 4.130 19 C -0.136 4.136 20 C -0.130 4.130 21 C -0.131 4.131 22 C -0.093 4.093 23 C -0.126 4.126 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.112 0.888 28 H 0.119 0.881 29 H 0.333 0.667 30 H 0.267 0.733 31 H 0.131 0.869 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.117 0.883 36 H 0.128 0.872 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.693 3.211 9.310 13.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.110 4.110 3 C -0.144 4.144 4 C -0.139 4.139 5 C -0.063 4.063 6 C 0.251 3.749 7 O -0.355 6.355 8 C -0.541 4.541 9 H 0.103 0.897 10 C -0.110 4.110 11 N -0.519 5.519 12 Si 0.695 3.305 13 H -0.199 1.199 14 H -0.232 1.232 15 H -0.154 1.154 16 C -0.080 4.080 17 C -0.099 4.099 18 C -0.148 4.148 19 C -0.154 4.154 20 C -0.149 4.149 21 C -0.149 4.149 22 C -0.111 4.111 23 C -0.144 4.144 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.130 0.870 28 H 0.137 0.863 29 H 0.180 0.820 30 H 0.077 0.923 31 H 0.149 0.851 32 H 0.133 0.867 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.135 0.865 36 H 0.146 0.854 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.283 2.838 8.702 12.345 hybrid contribution 0.687 0.586 0.862 1.248 sum -7.596 3.425 9.564 12.684 Atomic orbital electron populations 1.20700 0.92037 1.01953 1.01677 1.19753 0.95365 0.93478 1.02367 1.20832 0.94087 0.96906 1.02533 1.20950 0.93794 0.98079 1.01099 1.20588 0.96870 0.92915 0.95977 1.17139 0.85573 0.81619 0.90589 1.87190 1.76332 1.19560 1.52452 1.20583 0.93441 1.25268 1.14765 0.89670 1.24967 0.98444 0.93006 0.94586 1.69890 1.15387 1.32940 1.33637 0.87133 0.79152 0.83650 0.80545 1.19901 1.23169 1.15380 1.20961 0.96730 0.94170 0.96166 1.21091 0.97768 0.95600 0.95445 1.21118 1.00087 0.99066 0.94561 1.20951 1.01525 0.93680 0.99241 1.20938 1.01429 0.95658 0.96825 1.21037 1.00539 0.99692 0.93678 1.21094 0.93270 0.98629 0.98137 1.20967 0.94360 0.96962 1.02160 0.91810 0.92105 0.92202 0.87005 0.86305 0.82020 0.92308 0.85124 0.86749 0.87118 0.87036 0.86530 0.85405 0.86824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 10.01 36.01 0.36 -0.88 16 2 C -0.11 -1.69 5.88 -104.62 -0.62 -2.30 16 3 C -0.13 -1.99 9.70 -39.59 -0.38 -2.38 16 4 C -0.12 -2.19 9.25 -39.59 -0.37 -2.55 16 5 C -0.06 -1.29 4.74 -104.62 -0.50 -1.79 16 6 C 0.29 6.61 0.68 -94.07 -0.06 6.54 16 7 O -0.55 -12.32 8.90 -35.23 -0.31 -12.64 16 8 C -0.50 -13.71 7.28 -34.44 -0.25 -13.96 16 9 H 0.09 2.51 7.65 -52.48 -0.40 2.11 16 10 C 0.10 2.73 5.28 -17.82 -0.09 2.64 16 11 N -0.88 -26.49 13.96 55.43 0.77 -25.71 16 12 Si 0.87 22.26 23.22 -169.99 -3.95 18.32 16 13 H -0.27 -6.98 7.07 56.52 0.40 -6.58 16 14 H -0.30 -8.01 7.11 56.52 0.40 -7.61 16 15 H -0.23 -5.67 5.27 56.52 0.30 -5.37 16 16 C -0.08 -1.70 2.36 -104.62 -0.25 -1.94 16 17 C -0.08 -1.68 7.93 -39.58 -0.31 -1.99 16 18 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 19 C -0.14 -2.30 10.05 -39.58 -0.40 -2.70 16 20 C -0.13 -2.27 10.05 -39.58 -0.40 -2.67 16 21 C -0.13 -2.55 7.04 -39.58 -0.28 -2.83 16 22 C -0.09 -1.80 8.32 -39.58 -0.33 -2.13 16 23 C -0.13 -2.10 9.70 -39.58 -0.38 -2.48 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 26 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 27 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 28 H 0.12 1.96 6.41 -52.48 -0.34 1.62 16 29 H 0.33 6.01 6.14 45.56 0.28 6.29 16 30 H 0.27 7.62 8.31 -40.82 -0.34 7.29 16 31 H 0.13 2.75 6.12 -52.49 -0.32 2.43 16 32 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.12 2.07 6.36 -52.48 -0.33 1.73 16 36 H 0.13 2.52 6.15 -52.49 -0.32 2.19 16 37 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 295.58 15.07 4.45 4.45 Total: -1.00 -31.40 295.58 -7.74 -39.15 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -4.05 Total: 10.61 kcal Atomic # 6 Polarization: -29.52 SS G_CDS: -4.66 Total: -34.18 kcal Atomic # 7 Polarization: -26.49 SS G_CDS: 0.77 Total: -25.71 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: -0.31 Total: -12.64 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -3.95 Total: 18.32 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.40 -7.74 -39.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082303042.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.264 kcal (2) G-P(sol) polarization free energy of solvation -31.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds