Wall clock time and date at job start Mon Mar 30 2020 07:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38237 * 119.99823 * 2 1 4 4 C 1.38226 * 119.99919 * 180.02562 * 3 2 1 5 5 C 1.38237 * 120.00224 * 359.95288 * 4 3 2 6 6 C 1.50697 * 120.00197 * 180.02562 * 5 4 3 7 7 O 1.42908 * 109.47223 * 350.50350 * 6 5 4 8 8 C 1.50701 * 109.47367 * 230.50097 * 6 5 4 9 9 H 1.08004 * 119.99339 * 5.27602 * 8 6 5 10 10 C 1.37879 * 120.00250 * 185.27508 * 8 6 5 11 11 N 1.31510 * 119.99874 * 175.86022 * 10 8 6 12 12 Si 1.86801 * 119.99846 * 355.86314 * 10 8 6 13 13 H 1.48494 * 109.47335 * 85.40287 * 12 10 8 14 14 H 1.48503 * 109.46761 * 205.40406 * 12 10 8 15 15 H 1.48499 * 109.46924 * 325.40130 * 12 10 8 16 16 C 1.50703 * 109.47237 * 110.50184 * 6 5 4 17 17 C 1.38232 * 119.99994 * 74.87290 * 16 6 5 18 18 C 1.38236 * 120.00076 * 180.02562 * 17 16 6 19 19 C 1.38232 * 120.00064 * 359.95460 * 18 17 16 20 20 C 1.38236 * 119.99801 * 0.27296 * 19 18 17 21 21 C 1.38233 * 119.99994 * 359.53832 * 20 19 18 22 22 C 1.38241 * 119.99901 * 0.27508 * 5 4 3 23 23 C 1.38231 * 119.99685 * 359.51655 * 22 5 4 24 24 H 1.09000 * 109.47211 * 90.00556 * 1 2 3 25 25 H 1.09000 * 109.46798 * 209.99833 * 1 2 3 26 26 H 1.08995 * 109.47329 * 330.00111 * 1 2 3 27 27 H 1.08004 * 119.99956 * 359.96992 * 3 2 1 28 28 H 1.08007 * 120.00173 * 179.97438 * 4 3 2 29 29 H 0.96703 * 113.99700 * 59.99956 * 7 6 5 30 30 H 0.97002 * 120.00033 * 180.02562 * 11 10 8 31 31 H 1.08000 * 120.00226 * 359.97438 * 17 16 6 32 32 H 1.07998 * 119.99868 * 179.97438 * 18 17 16 33 33 H 1.08001 * 120.00146 * 180.02562 * 19 18 17 34 34 H 1.08000 * 119.99758 * 179.72819 * 20 19 18 35 35 H 1.08009 * 119.99899 * 180.20543 * 21 20 19 36 36 H 1.07996 * 119.99719 * 179.73048 * 22 5 4 37 37 H 1.07999 * 119.99869 * 180.25043 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5804 1.1972 -0.0005 5 6 4.2717 0.0001 -0.0001 6 6 5.7787 0.0001 -0.0001 7 8 6.2550 1.3289 -0.2229 8 6 6.2811 -0.9040 -1.0961 9 1 5.5829 -1.3592 -1.7830 10 6 7.6319 -1.1501 -1.2219 11 7 8.0637 -2.0021 -2.1258 12 14 8.8486 -0.2732 -0.1082 13 1 8.9839 -1.0243 1.1656 14 1 10.1702 -0.1980 -0.7813 15 1 8.3590 1.0996 0.1761 16 6 6.2810 -0.4970 1.3309 17 6 6.2169 -1.8440 1.6346 18 6 6.6773 -2.3000 2.8557 19 6 7.2026 -1.4090 3.7728 20 6 7.2623 -0.0613 3.4710 21 6 6.8056 0.3941 2.2484 22 6 3.5805 -1.1971 -0.0048 23 6 2.1982 -1.1971 0.0000 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.6581 2.1325 -0.0005 28 1 4.1205 2.1326 -0.0010 29 1 5.9696 1.9663 0.4460 30 1 9.0140 -2.1755 -2.2141 31 1 5.8064 -2.5402 0.9182 32 1 6.6268 -3.3523 3.0931 33 1 7.5626 -1.7653 4.7267 34 1 7.6687 0.6354 4.1893 35 1 6.8554 1.4467 2.0113 36 1 4.1206 -2.1323 -0.0089 37 1 1.6583 -2.1325 0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082303042.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:50 Heat of formation + Delta-G solvation = -10.430815 kcal Electronic energy + Delta-G solvation = -20462.760871 eV Core-core repulsion = 17555.195134 eV Total energy + Delta-G solvation = -2907.565736 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.22152 -39.62655 -37.67350 -34.76908 -33.72608 -32.21990 -31.64419 -31.47292 -29.24057 -27.30318 -24.53923 -23.60454 -23.02394 -22.48074 -21.11580 -19.00467 -18.71138 -17.69802 -16.70718 -16.47893 -15.96351 -15.79431 -15.58199 -15.22456 -14.80775 -14.52737 -14.43721 -14.32802 -14.05685 -13.77855 -13.64390 -12.92207 -12.89671 -12.64878 -12.56241 -12.40466 -12.10664 -11.88528 -11.80969 -11.64158 -11.49675 -10.82006 -10.50133 -9.74304 -9.68193 -9.42464 -9.19869 -8.37895 -6.50302 0.46119 0.57326 0.62227 0.65767 1.38201 1.40185 1.60903 2.39488 2.88703 2.98365 3.01907 3.82820 4.00126 4.08376 4.13028 4.19022 4.20736 4.29102 4.33701 4.46978 4.61886 4.70636 4.76717 4.83934 4.90645 4.96316 5.03489 5.10839 5.20907 5.27387 5.35666 5.41267 5.61069 5.63700 5.68314 5.77908 5.86476 5.92152 6.21129 6.21659 6.30405 6.58324 7.14163 7.29626 8.74130 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.018726 B = 0.008170 C = 0.007068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.897038 B = 3426.497471 C = 3960.404739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.105 4.105 3 C -0.124 4.124 4 C -0.130 4.130 5 C -0.095 4.095 6 C 0.295 3.705 7 O -0.566 6.566 8 C -0.498 4.498 9 H 0.041 0.959 10 C 0.045 3.955 11 N -0.933 5.933 12 Si 0.925 3.075 13 H -0.269 1.269 14 H -0.318 1.318 15 H -0.211 1.211 16 C -0.099 4.099 17 C -0.108 4.108 18 C -0.136 4.136 19 C -0.132 4.132 20 C -0.128 4.128 21 C -0.145 4.145 22 C -0.115 4.115 23 C -0.132 4.132 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.147 0.853 28 H 0.132 0.868 29 H 0.357 0.643 30 H 0.266 0.734 31 H 0.106 0.894 32 H 0.137 0.863 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.132 0.868 36 H 0.105 0.895 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.003 5.192 12.242 16.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.105 4.105 3 C -0.142 4.142 4 C -0.148 4.148 5 C -0.095 4.095 6 C 0.256 3.744 7 O -0.373 6.373 8 C -0.534 4.534 9 H 0.060 0.940 10 C -0.155 4.155 11 N -0.572 5.572 12 Si 0.751 3.249 13 H -0.195 1.195 14 H -0.247 1.247 15 H -0.133 1.133 16 C -0.099 4.099 17 C -0.126 4.126 18 C -0.154 4.154 19 C -0.150 4.150 20 C -0.145 4.145 21 C -0.163 4.163 22 C -0.134 4.134 23 C -0.150 4.150 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.098 0.902 27 H 0.164 0.836 28 H 0.150 0.850 29 H 0.205 0.795 30 H 0.074 0.926 31 H 0.124 0.876 32 H 0.155 0.845 33 H 0.168 0.832 34 H 0.168 0.832 35 H 0.149 0.851 36 H 0.123 0.877 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.623 4.838 11.654 15.870 hybrid contribution 0.916 -0.054 -0.023 0.918 sum -8.707 4.784 11.631 15.297 Atomic orbital electron populations 1.20773 0.88763 1.03680 1.02891 1.20256 0.97704 0.92611 0.99899 1.21243 0.93309 0.98621 1.00999 1.21159 0.95073 0.97496 1.01075 1.20520 0.95849 0.94340 0.98780 1.16815 0.87141 0.80679 0.89791 1.87017 1.76668 1.19865 1.53792 1.20732 0.92491 1.25524 1.14698 0.94034 1.25688 1.00233 0.93734 0.95892 1.70025 1.15469 1.35480 1.36268 0.86268 0.76245 0.83639 0.78773 1.19486 1.24685 1.13292 1.20767 0.98348 0.94732 0.96096 1.21064 0.99509 0.95446 0.96584 1.21443 0.99433 1.00808 0.93726 1.21439 0.99889 0.93401 1.00236 1.21418 0.99973 0.96644 0.96505 1.21280 1.00595 1.00139 0.94289 1.21054 0.94742 0.97671 0.99894 1.21236 0.93250 0.98864 1.01685 0.90672 0.90816 0.90163 0.83560 0.85048 0.79451 0.92558 0.87641 0.84511 0.83185 0.83206 0.85069 0.87733 0.84763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.02 10.01 71.24 0.71 -1.30 16 2 C -0.10 -2.97 5.88 -19.86 -0.12 -3.09 16 3 C -0.12 -3.61 9.70 22.27 0.22 -3.40 16 4 C -0.13 -4.56 9.25 22.27 0.21 -4.35 16 5 C -0.09 -3.95 4.74 -19.86 -0.09 -4.05 16 6 C 0.30 13.74 0.68 -13.03 -0.01 13.73 16 7 O -0.57 -25.06 8.90 -148.98 -1.33 -26.39 16 8 C -0.50 -28.65 7.28 25.60 0.19 -28.47 16 9 H 0.04 2.67 7.65 -2.91 -0.02 2.65 16 10 C 0.04 2.67 5.28 84.66 0.45 3.12 16 11 N -0.93 -59.30 13.96 21.45 0.30 -59.00 16 12 Si 0.92 47.08 23.22 68.60 1.59 48.67 16 13 H -0.27 -13.36 7.07 99.48 0.70 -12.65 16 14 H -0.32 -16.66 7.11 99.48 0.71 -15.96 16 15 H -0.21 -9.92 5.27 99.48 0.52 -9.40 16 16 C -0.10 -4.21 2.36 -19.87 -0.05 -4.25 16 17 C -0.11 -4.57 7.93 22.27 0.18 -4.39 16 18 C -0.14 -4.76 10.05 22.27 0.22 -4.53 16 19 C -0.13 -3.99 10.05 22.27 0.22 -3.76 16 20 C -0.13 -3.93 10.05 22.27 0.22 -3.71 16 21 C -0.15 -5.29 7.04 22.27 0.16 -5.13 16 22 C -0.12 -4.68 8.32 22.27 0.19 -4.49 16 23 C -0.13 -4.35 9.70 22.27 0.22 -4.14 16 24 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.07 1.26 8.09 -2.39 -0.02 1.24 16 26 H 0.08 1.26 8.09 -2.39 -0.02 1.24 16 27 H 0.15 3.22 8.06 -2.91 -0.02 3.19 16 28 H 0.13 4.11 6.41 -2.91 -0.02 4.09 16 29 H 0.36 12.24 6.14 -74.06 -0.45 11.79 16 30 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 31 H 0.11 4.85 6.12 -2.91 -0.02 4.83 16 32 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 33 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 34 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 35 H 0.13 4.26 6.36 -2.91 -0.02 4.24 16 36 H 0.10 4.57 6.15 -2.91 -0.02 4.55 16 37 H 0.13 3.70 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -72.08 295.58 3.91 -68.17 By element: Atomic # 1 Polarization: 30.31 SS G_CDS: 0.44 Total: 30.75 kcal Atomic # 6 Polarization: -65.11 SS G_CDS: 2.91 Total: -62.20 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: 0.30 Total: -59.00 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -1.33 Total: -26.39 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 1.59 Total: 48.67 kcal Total: -72.08 3.91 -68.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082303042.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.740 kcal (2) G-P(sol) polarization free energy of solvation -72.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds