Wall clock time and date at job start Mon Mar 30 2020 07:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99837 * 2 1 4 4 H 1.48501 * 109.47331 * 89.99811 * 3 2 1 5 5 H 1.48504 * 109.47119 * 210.00116 * 3 2 1 6 6 H 1.48507 * 109.47181 * 330.00112 * 3 2 1 7 7 C 1.37877 * 120.00294 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00089 * 342.67775 * 7 2 1 9 9 C 1.50698 * 120.00044 * 162.68190 * 7 2 1 10 10 H 1.09004 * 109.67995 * 53.96820 * 9 7 2 11 11 C 1.53365 * 109.68148 * 293.41568 * 9 7 2 12 12 C 1.53082 * 109.49830 * 190.41522 * 11 9 7 13 13 C 1.53351 * 109.51663 * 70.20199 * 12 11 9 14 14 C 1.50865 * 108.39901 * 310.05931 * 13 12 11 15 15 N 1.34468 * 127.88866 * 196.66156 * 14 13 12 16 16 H 0.96999 * 125.97154 * 359.80764 * 15 14 13 17 17 N 1.40265 * 108.05082 * 179.78695 * 15 14 13 18 18 C 1.31848 * 108.17355 * 0.05301 * 17 15 14 19 19 C 1.48421 * 126.10515 * 180.02562 * 18 17 15 20 20 C 1.39326 * 120.11829 * 144.69994 * 19 18 17 21 21 C 1.38022 * 119.87210 * 179.75086 * 20 19 18 22 22 C 1.38318 * 120.12679 * 0.55538 * 21 20 19 23 23 C 1.38319 * 120.23503 * 359.69677 * 22 21 20 24 24 C 1.38021 * 120.12499 * 0.02796 * 23 22 21 25 25 C 1.35524 * 124.08351 * 16.54919 * 14 13 12 26 26 H 0.96996 * 119.99241 * 174.69028 * 1 2 3 27 27 H 1.09001 * 109.46695 * 310.40834 * 11 9 7 28 28 H 1.08998 * 109.47063 * 70.39450 * 11 9 7 29 29 H 1.08997 * 109.44833 * 310.19615 * 12 11 9 30 30 H 1.09000 * 109.46282 * 190.22296 * 12 11 9 31 31 H 1.09005 * 109.68111 * 190.33488 * 13 12 11 32 32 H 1.09001 * 109.70852 * 69.80702 * 13 12 11 33 33 H 1.07998 * 120.06235 * 0.02562 * 20 19 18 34 34 H 1.08005 * 119.93536 * 180.27246 * 21 20 19 35 35 H 1.07997 * 119.88456 * 179.72140 * 22 21 20 36 36 H 1.08009 * 119.93523 * 180.02562 * 23 22 21 37 37 H 1.07998 * 120.06402 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7001 6 1 1.4465 2.6528 -0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.5014 -2.1083 0.2775 9 6 3.4603 -1.2234 -0.3890 10 1 4.0170 -0.5104 0.2192 11 6 3.6064 -0.8627 -1.8725 12 6 5.0408 -1.1434 -2.3277 13 6 5.2770 -2.6579 -2.3724 14 6 4.8201 -3.2499 -1.0622 15 7 5.1161 -4.4594 -0.5545 16 1 5.6753 -5.1320 -0.9739 17 7 4.4754 -4.5781 0.6876 18 6 3.8101 -3.4629 0.9154 19 6 2.9913 -3.1627 2.1164 20 6 2.9469 -1.8668 2.6262 21 6 2.1798 -1.5922 3.7402 22 6 1.4650 -2.6030 4.3572 23 6 1.5098 -3.8923 3.8583 24 6 2.2691 -4.1770 2.7415 25 6 4.0140 -2.6107 -0.1799 26 1 -0.4849 -0.8365 -0.0777 27 1 2.9142 -1.4636 -2.4623 28 1 3.3807 0.1943 -2.0134 29 1 5.7398 -0.6872 -1.6268 30 1 5.1956 -0.7221 -3.3211 31 1 6.3386 -2.8598 -2.5160 32 1 4.7062 -3.0950 -3.1917 33 1 3.5082 -1.0777 2.1479 34 1 2.1411 -0.5871 4.1336 35 1 0.8696 -2.3847 5.2314 36 1 0.9494 -4.6778 4.3437 37 1 2.3030 -5.1839 2.3526 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082825241.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:51 Heat of formation + Delta-G solvation = 85.302785 kcal Electronic energy + Delta-G solvation = -20551.218908 eV Core-core repulsion = 17680.097244 eV Total energy + Delta-G solvation = -2871.121665 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.92186 -38.20034 -36.09608 -33.34012 -32.00587 -30.34319 -29.82608 -28.84272 -28.37005 -24.63427 -22.88487 -22.06257 -21.36533 -21.04634 -19.38348 -17.91630 -17.54080 -16.65455 -16.09463 -14.80150 -14.70085 -14.07281 -13.90663 -13.51236 -13.25674 -13.15355 -12.99817 -12.72799 -12.46539 -12.02518 -11.88590 -11.53489 -11.25066 -10.83715 -10.64257 -10.45024 -10.38713 -10.21081 -9.89628 -9.82679 -9.46749 -9.19424 -8.69921 -8.27238 -8.18689 -7.85444 -7.40491 -6.31909 -3.91941 1.72170 2.14170 2.54055 3.31168 3.42336 3.45014 3.53833 3.59951 4.55410 4.59308 4.99462 5.20182 5.32106 5.33681 5.46236 5.51942 5.59860 5.71597 5.82236 6.05627 6.09025 6.11168 6.21419 6.24116 6.28206 6.39982 6.53981 6.62340 6.68689 6.81372 6.92806 7.07698 7.13996 7.23318 7.29301 7.43655 7.51621 7.66932 7.82631 8.17545 8.32636 8.51679 9.05532 9.72652 11.03755 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.013273 B = 0.011584 C = 0.006839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.091655 B = 2416.641340 C = 4093.122538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.036 3.964 3 Si 1.029 2.971 4 H -0.286 1.286 5 H -0.270 1.270 6 H -0.289 1.289 7 C -0.575 4.575 8 H 0.061 0.939 9 C 0.087 3.913 10 H 0.028 0.972 11 C -0.120 4.120 12 C -0.117 4.117 13 C -0.046 4.046 14 C 0.051 3.949 15 N -0.481 5.481 16 H 0.429 0.571 17 N -0.306 5.306 18 C 0.127 3.873 19 C 0.003 3.997 20 C -0.041 4.041 21 C -0.127 4.127 22 C -0.118 4.118 23 C -0.139 4.139 24 C -0.102 4.102 25 C -0.161 4.161 26 H 0.268 0.732 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.129 0.871 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.233 -4.269 0.514 10.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.169 4.169 3 Si 0.857 3.143 4 H -0.213 1.213 5 H -0.195 1.195 6 H -0.215 1.215 7 C -0.613 4.613 8 H 0.079 0.921 9 C 0.068 3.932 10 H 0.046 0.954 11 C -0.158 4.158 12 C -0.155 4.155 13 C -0.085 4.085 14 C -0.075 4.075 15 N -0.189 5.189 16 H 0.271 0.729 17 N -0.130 5.130 18 C -0.036 4.036 19 C 0.001 3.999 20 C -0.060 4.060 21 C -0.145 4.145 22 C -0.137 4.137 23 C -0.157 4.157 24 C -0.121 4.121 25 C -0.172 4.172 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.146 0.854 34 H 0.136 0.864 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 9.330 -3.770 1.002 10.112 hybrid contribution 0.109 -1.391 -0.808 1.612 sum 9.438 -5.161 0.194 10.759 Atomic orbital electron populations 1.70769 1.07173 1.30427 1.45653 1.25559 0.96055 1.01771 0.93519 0.84303 0.76107 0.76556 0.77296 1.21258 1.19546 1.21496 1.21913 0.93403 0.96378 1.49566 0.92111 1.17740 0.96804 0.87031 0.91667 0.95392 1.22126 0.93093 1.01021 0.99553 1.21638 0.99989 0.93184 1.00706 1.20236 0.99853 0.96797 0.91620 1.20874 1.01063 0.87540 0.98071 1.45773 1.42689 1.14088 1.16400 0.72859 1.77537 1.15515 1.21981 0.97928 1.20458 0.96596 0.91456 0.95065 1.17626 0.96743 0.93725 0.91786 1.21105 0.96733 0.95132 0.93077 1.20962 0.98054 0.98776 0.96705 1.21043 0.99459 0.93267 0.99906 1.20831 1.00721 0.96688 0.97456 1.21045 0.97028 0.98349 0.95694 1.20372 1.02442 1.00539 0.93843 0.92205 0.92408 0.92264 0.92157 0.92259 0.91472 0.90626 0.85350 0.86392 0.86917 0.86865 0.86772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.96 13.70 55.43 0.76 -26.20 16 2 C 0.04 0.98 5.36 -17.82 -0.10 0.88 16 3 Si 1.03 23.82 26.49 -169.99 -4.50 19.31 16 4 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.27 -5.63 5.41 56.52 0.31 -5.33 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 7 C -0.57 -15.09 6.08 -34.44 -0.21 -15.30 16 8 H 0.06 1.81 6.97 -52.49 -0.37 1.44 16 9 C 0.09 1.98 1.09 -92.67 -0.10 1.88 16 10 H 0.03 0.64 5.90 -51.93 -0.31 0.34 16 11 C -0.12 -2.44 4.73 -26.50 -0.13 -2.56 16 12 C -0.12 -1.86 5.90 -26.51 -0.16 -2.01 16 13 C -0.05 -0.67 6.30 -27.62 -0.17 -0.84 16 14 C 0.05 0.93 7.07 -82.33 -0.58 0.35 16 15 N -0.48 -8.13 7.33 33.47 0.25 -7.89 16 16 H 0.43 5.42 8.96 -182.47 -1.64 3.79 16 17 N -0.31 -6.15 12.72 33.35 0.42 -5.72 16 18 C 0.13 2.77 6.52 -82.90 -0.54 2.23 16 19 C 0.00 0.07 4.65 -104.89 -0.49 -0.42 16 20 C -0.04 -0.86 7.53 -39.26 -0.30 -1.15 16 21 C -0.13 -2.40 10.03 -39.63 -0.40 -2.79 16 22 C -0.12 -2.03 10.04 -39.52 -0.40 -2.43 16 23 C -0.14 -2.40 10.03 -39.63 -0.40 -2.80 16 24 C -0.10 -1.97 9.75 -39.26 -0.38 -2.36 16 25 C -0.16 -3.47 5.34 -104.77 -0.56 -4.03 16 26 H 0.27 8.11 8.73 -40.82 -0.36 7.75 16 27 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 28 H 0.06 1.22 5.21 -51.93 -0.27 0.95 16 29 H 0.06 0.95 8.11 -51.93 -0.42 0.53 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.13 2.75 6.15 -52.49 -0.32 2.43 16 34 H 0.12 2.00 8.06 -52.48 -0.42 1.58 16 35 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.11 1.62 8.06 -52.48 -0.42 1.19 16 37 H 0.11 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 295.06 15.07 4.45 4.45 Total: -1.00 -30.71 295.06 -9.48 -40.19 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -5.95 Total: 7.23 kcal Atomic # 6 Polarization: -26.47 SS G_CDS: -4.90 Total: -31.37 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 1.43 Total: -39.81 kcal Atomic # 14 Polarization: 23.82 SS G_CDS: -4.50 Total: 19.31 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.71 -9.48 -40.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082825241.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.492 kcal (2) G-P(sol) polarization free energy of solvation -30.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds