Wall clock time and date at job start Mon Mar 30 2020 07:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99837 * 2 1 4 4 H 1.48501 * 109.47331 * 89.99811 * 3 2 1 5 5 H 1.48504 * 109.47119 * 210.00116 * 3 2 1 6 6 H 1.48507 * 109.47181 * 330.00112 * 3 2 1 7 7 C 1.37877 * 120.00294 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00089 * 342.67775 * 7 2 1 9 9 C 1.50698 * 120.00044 * 162.68190 * 7 2 1 10 10 H 1.09004 * 109.67995 * 53.96820 * 9 7 2 11 11 C 1.53365 * 109.68148 * 293.41568 * 9 7 2 12 12 C 1.53082 * 109.49830 * 190.41522 * 11 9 7 13 13 C 1.53351 * 109.51663 * 70.20199 * 12 11 9 14 14 C 1.50865 * 108.39901 * 310.05931 * 13 12 11 15 15 N 1.34468 * 127.88866 * 196.66156 * 14 13 12 16 16 H 0.96999 * 125.97154 * 359.80764 * 15 14 13 17 17 N 1.40265 * 108.05082 * 179.78695 * 15 14 13 18 18 C 1.31848 * 108.17355 * 0.05301 * 17 15 14 19 19 C 1.48421 * 126.10515 * 180.02562 * 18 17 15 20 20 C 1.39326 * 120.11829 * 144.69994 * 19 18 17 21 21 C 1.38022 * 119.87210 * 179.75086 * 20 19 18 22 22 C 1.38318 * 120.12679 * 0.55538 * 21 20 19 23 23 C 1.38319 * 120.23503 * 359.69677 * 22 21 20 24 24 C 1.38021 * 120.12499 * 0.02796 * 23 22 21 25 25 C 1.35524 * 124.08351 * 16.54919 * 14 13 12 26 26 H 0.96996 * 119.99241 * 174.69028 * 1 2 3 27 27 H 1.09001 * 109.46695 * 310.40834 * 11 9 7 28 28 H 1.08998 * 109.47063 * 70.39450 * 11 9 7 29 29 H 1.08997 * 109.44833 * 310.19615 * 12 11 9 30 30 H 1.09000 * 109.46282 * 190.22296 * 12 11 9 31 31 H 1.09005 * 109.68111 * 190.33488 * 13 12 11 32 32 H 1.09001 * 109.70852 * 69.80702 * 13 12 11 33 33 H 1.07998 * 120.06235 * 0.02562 * 20 19 18 34 34 H 1.08005 * 119.93536 * 180.27246 * 21 20 19 35 35 H 1.07997 * 119.88456 * 179.72140 * 22 21 20 36 36 H 1.08009 * 119.93523 * 180.02562 * 23 22 21 37 37 H 1.07998 * 120.06402 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7001 6 1 1.4465 2.6528 -0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.5014 -2.1083 0.2775 9 6 3.4603 -1.2234 -0.3890 10 1 4.0170 -0.5104 0.2192 11 6 3.6064 -0.8627 -1.8725 12 6 5.0408 -1.1434 -2.3277 13 6 5.2770 -2.6579 -2.3724 14 6 4.8201 -3.2499 -1.0622 15 7 5.1161 -4.4594 -0.5545 16 1 5.6753 -5.1320 -0.9739 17 7 4.4754 -4.5781 0.6876 18 6 3.8101 -3.4629 0.9154 19 6 2.9913 -3.1627 2.1164 20 6 2.9469 -1.8668 2.6262 21 6 2.1798 -1.5922 3.7402 22 6 1.4650 -2.6030 4.3572 23 6 1.5098 -3.8923 3.8583 24 6 2.2691 -4.1770 2.7415 25 6 4.0140 -2.6107 -0.1799 26 1 -0.4849 -0.8365 -0.0777 27 1 2.9142 -1.4636 -2.4623 28 1 3.3807 0.1943 -2.0134 29 1 5.7398 -0.6872 -1.6268 30 1 5.1956 -0.7221 -3.3211 31 1 6.3386 -2.8598 -2.5160 32 1 4.7062 -3.0950 -3.1917 33 1 3.5082 -1.0777 2.1479 34 1 2.1411 -0.5871 4.1336 35 1 0.8696 -2.3847 5.2314 36 1 0.9494 -4.6778 4.3437 37 1 2.3030 -5.1839 2.3526 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082825241.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:51 Heat of formation + Delta-G solvation = 66.604618 kcal Electronic energy + Delta-G solvation = -20552.029722 eV Core-core repulsion = 17680.097244 eV Total energy + Delta-G solvation = -2871.932478 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.41249 -39.66745 -37.63359 -35.02010 -33.78537 -31.85941 -31.35824 -30.34067 -29.90540 -26.37372 -24.37243 -23.53966 -23.06909 -22.53090 -20.88059 -19.56949 -19.43338 -18.12719 -17.53854 -16.29455 -16.18104 -15.73168 -15.44451 -15.03268 -14.94338 -14.61137 -14.47082 -14.17583 -13.99564 -13.57993 -13.42880 -13.24080 -12.82444 -12.50987 -12.15025 -11.97820 -11.88653 -11.80015 -11.52992 -11.41762 -11.07351 -10.74520 -10.54792 -10.35445 -9.70877 -9.37110 -8.99740 -8.46818 -6.08057 0.22029 0.63721 1.07489 1.54472 1.58434 1.75580 1.94728 2.00174 2.62125 3.06908 3.28296 3.57897 3.84465 4.06119 4.12739 4.20284 4.22706 4.31611 4.54146 4.59961 4.63152 4.71930 4.77924 4.86868 4.90557 4.92434 5.08036 5.19052 5.24130 5.28897 5.41736 5.52107 5.60322 5.69033 5.74939 5.82562 5.87732 6.19613 6.23882 6.29128 6.54006 6.79065 6.82857 7.63951 8.84383 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.013273 B = 0.011584 C = 0.006839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.091655 B = 2416.641340 C = 4093.122538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.013 4.013 3 Si 1.064 2.936 4 H -0.276 1.276 5 H -0.232 1.232 6 H -0.296 1.296 7 C -0.551 4.551 8 H 0.013 0.987 9 C 0.089 3.911 10 H 0.025 0.975 11 C -0.121 4.121 12 C -0.111 4.111 13 C -0.043 4.043 14 C 0.074 3.926 15 N -0.461 5.461 16 H 0.450 0.550 17 N -0.323 5.323 18 C 0.106 3.894 19 C -0.021 4.021 20 C -0.065 4.065 21 C -0.139 4.139 22 C -0.118 4.118 23 C -0.133 4.133 24 C -0.119 4.119 25 C -0.211 4.211 26 H 0.247 0.753 27 H 0.038 0.962 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.133 0.867 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.602 -4.474 -0.237 12.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.887 3.113 4 H -0.202 1.202 5 H -0.155 1.155 6 H -0.222 1.222 7 C -0.589 4.589 8 H 0.031 0.969 9 C 0.069 3.931 10 H 0.043 0.957 11 C -0.159 4.159 12 C -0.149 4.149 13 C -0.082 4.082 14 C -0.056 4.056 15 N -0.171 5.171 16 H 0.297 0.703 17 N -0.148 5.148 18 C -0.056 4.056 19 C -0.023 4.023 20 C -0.085 4.085 21 C -0.157 4.157 22 C -0.136 4.136 23 C -0.151 4.151 24 C -0.138 4.138 25 C -0.222 4.222 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.112 0.888 31 H 0.130 0.870 32 H 0.110 0.890 33 H 0.131 0.869 34 H 0.151 0.849 35 H 0.167 0.833 36 H 0.167 0.833 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 11.743 -4.023 0.252 12.416 hybrid contribution -0.624 -1.488 -0.543 1.702 sum 11.119 -5.511 -0.291 12.413 Atomic orbital electron populations 1.70924 1.08554 1.29010 1.49828 1.26799 0.95840 1.05300 0.93089 0.83897 0.76592 0.72611 0.78236 1.20208 1.15538 1.22231 1.21870 0.95340 0.94141 1.47524 0.96889 1.17611 0.93926 0.88329 0.93234 0.95737 1.21997 0.96328 1.00229 0.97316 1.21605 0.96252 0.94499 1.02573 1.20450 1.02741 0.95468 0.89550 1.21382 0.98745 0.87009 0.98429 1.45784 1.41732 1.14297 1.15330 0.70344 1.77458 1.16176 1.21632 0.99525 1.20672 0.97231 0.92152 0.95588 1.17898 0.97639 0.94363 0.92420 1.21102 0.98053 0.94918 0.94421 1.21283 0.97872 1.00205 0.96357 1.21465 0.98824 0.92698 1.00591 1.21264 0.99638 0.97811 0.96410 1.21257 0.97640 0.98232 0.96697 1.20429 1.05403 1.00796 0.95575 0.94466 0.94322 0.92807 0.91640 0.88770 0.87038 0.88956 0.86921 0.84944 0.83299 0.83338 0.86483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.01 13.70 21.45 0.29 -58.72 16 2 C -0.01 -0.75 5.36 84.65 0.45 -0.30 16 3 Si 1.06 48.38 26.49 68.60 1.82 50.20 16 4 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.23 -9.04 5.41 99.48 0.54 -8.50 16 6 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16 7 C -0.55 -30.16 6.08 25.60 0.16 -30.00 16 8 H 0.01 0.81 6.97 -2.91 -0.02 0.79 16 9 C 0.09 4.04 1.09 -12.12 -0.01 4.03 16 10 H 0.02 1.13 5.90 -2.39 -0.01 1.12 16 11 C -0.12 -4.73 4.73 30.74 0.15 -4.59 16 12 C -0.11 -3.07 5.90 30.74 0.18 -2.89 16 13 C -0.04 -1.06 6.30 30.02 0.19 -0.87 16 14 C 0.07 2.49 7.07 41.58 0.29 2.79 16 15 N -0.46 -14.59 7.33 -48.01 -0.35 -14.94 16 16 H 0.45 9.93 8.96 -213.22 -1.91 8.02 16 17 N -0.32 -12.91 12.72 -48.41 -0.62 -13.53 16 18 C 0.11 4.69 6.52 42.35 0.28 4.97 16 19 C -0.02 -0.94 4.65 -20.04 -0.09 -1.03 16 20 C -0.07 -2.86 7.53 22.48 0.17 -2.69 16 21 C -0.14 -5.34 10.03 22.24 0.22 -5.12 16 22 C -0.12 -3.93 10.04 22.31 0.22 -3.71 16 23 C -0.13 -4.50 10.03 22.24 0.22 -4.28 16 24 C -0.12 -4.72 9.75 22.48 0.22 -4.50 16 25 C -0.21 -9.10 5.34 -19.96 -0.11 -9.20 16 26 H 0.25 15.94 8.73 -92.71 -0.81 15.13 16 27 H 0.04 1.63 8.08 -2.39 -0.02 1.61 16 28 H 0.05 2.12 5.21 -2.39 -0.01 2.11 16 29 H 0.06 1.77 8.11 -2.39 -0.02 1.76 16 30 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.11 1.85 8.14 -2.38 -0.02 1.84 16 32 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.11 5.11 6.15 -2.91 -0.02 5.10 16 34 H 0.13 4.53 8.06 -2.91 -0.02 4.50 16 35 H 0.15 3.85 8.06 -2.91 -0.02 3.82 16 36 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 37 H 0.12 4.43 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -71.81 295.06 2.66 -69.14 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: -1.02 Total: 25.23 kcal Atomic # 6 Polarization: -59.92 SS G_CDS: 2.54 Total: -57.38 kcal Atomic # 7 Polarization: -86.52 SS G_CDS: -0.67 Total: -87.19 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 1.82 Total: 50.20 kcal Total: -71.81 2.66 -69.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082825241.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.749 kcal (2) G-P(sol) polarization free energy of solvation -71.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds