Wall clock time and date at job start Mon Mar 30 2020 06:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47107 * 2 1 4 4 N 1.46900 * 109.47436 * 119.99650 * 2 1 3 5 5 C 1.46894 * 111.00644 * 169.04778 * 4 2 1 6 6 C 1.50707 * 109.47027 * 293.95546 * 5 4 2 7 7 H 1.08003 * 119.99723 * 0.02562 * 6 5 4 8 8 C 1.37871 * 119.99874 * 179.97438 * 6 5 4 9 9 N 1.31522 * 119.99685 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 120.00397 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.46921 * 90.00254 * 10 8 6 12 12 H 1.48498 * 109.47217 * 210.00334 * 10 8 6 13 13 H 1.48502 * 109.46913 * 329.99876 * 10 8 6 14 14 C 1.46905 * 111.00105 * 293.00291 * 4 2 1 15 15 C 1.50698 * 109.47483 * 159.88855 * 14 4 2 16 16 C 1.38168 * 119.60990 * 94.91831 * 15 14 4 17 17 C 1.38782 * 119.13988 * 179.75084 * 16 15 14 18 18 Cl 1.73599 * 120.80184 * 180.28347 * 17 16 15 19 19 C 1.38813 * 118.39639 * 0.51775 * 17 16 15 20 20 C 1.38131 * 119.14536 * 359.74970 * 19 17 16 21 21 N 1.31885 * 119.61187 * 275.19693 * 15 14 4 22 22 H 1.08998 * 109.47537 * 300.03615 * 1 2 3 23 23 H 1.08995 * 109.47268 * 60.04055 * 1 2 3 24 24 H 1.09008 * 109.47232 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47254 * 239.99808 * 2 1 3 26 26 H 1.09002 * 109.47359 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.46868 * 299.99761 * 3 2 1 28 28 H 1.08998 * 109.47669 * 59.99526 * 3 2 1 29 29 H 1.09002 * 109.47327 * 53.95039 * 5 4 2 30 30 H 1.09000 * 109.47404 * 173.95442 * 5 4 2 31 31 H 0.96998 * 119.99693 * 179.97438 * 9 8 6 32 32 H 1.09001 * 109.47191 * 279.89166 * 14 4 2 33 33 H 1.09004 * 109.46988 * 39.88729 * 14 4 2 34 34 H 1.07994 * 120.42617 * 0.02798 * 16 15 14 35 35 H 1.08001 * 120.42963 * 179.76499 * 19 17 16 36 36 H 1.07994 * 119.60875 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 3.4645 -0.9418 1.1104 6 6 3.7379 -1.9187 -0.0042 7 1 2.9201 -2.3142 -0.5882 8 6 5.0321 -2.3065 -0.2789 9 7 5.2706 -3.1594 -1.2513 10 14 6.4469 -1.6207 0.7299 11 1 6.6944 -2.5026 1.8988 12 1 7.6695 -1.5580 -0.1106 13 1 6.1014 -0.2563 1.2035 14 6 1.6899 0.0634 2.4152 15 6 1.7446 -0.8554 3.6084 16 6 2.9012 -0.9296 4.3605 17 6 2.9391 -1.7751 5.4604 18 17 4.3673 -1.8963 6.4397 19 6 1.8090 -2.5252 5.7556 20 6 0.6912 -2.4018 4.9536 21 7 0.6897 -1.5835 3.9191 22 1 -0.3634 0.5144 0.8896 23 1 -0.3633 0.5132 -0.8903 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 3.1299 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8901 28 1 1.6766 1.9564 0.8899 29 1 3.9832 -0.0048 0.9076 30 1 3.8203 -1.3574 2.0532 31 1 6.1812 -3.4320 -1.4448 32 1 2.4087 0.8723 2.5463 33 1 0.6869 0.4801 2.3231 34 1 3.7631 -0.3339 4.0986 35 1 1.8037 -3.1965 6.6016 36 1 -0.1922 -2.9815 5.1767 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086129956.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:26 Heat of formation + Delta-G solvation = 32.444289 kcal Electronic energy + Delta-G solvation = -18573.505319 eV Core-core repulsion = 15697.658688 eV Total energy + Delta-G solvation = -2875.846631 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.19475 -37.80406 -36.67484 -32.73442 -32.53402 -31.97483 -30.44300 -27.99909 -26.65300 -25.17281 -23.53358 -22.03532 -21.69831 -18.85231 -16.98896 -16.74074 -16.50552 -15.72087 -15.05506 -14.73468 -14.23747 -13.85888 -13.77976 -13.43173 -13.13222 -12.75378 -12.44503 -12.39262 -12.09823 -11.92590 -11.71352 -11.43066 -11.13860 -10.90435 -10.69330 -10.59932 -10.39474 -10.01215 -9.89746 -9.41863 -9.35502 -9.21395 -8.92963 -8.56859 -7.38569 -6.05754 -4.02437 1.12920 1.17455 1.96021 3.26818 3.33764 3.34836 3.76655 4.40284 4.40561 4.68783 4.91375 4.92948 5.13703 5.26663 5.42634 5.48648 5.55441 5.68646 5.79911 5.86393 5.90089 5.99392 6.02855 6.06481 6.19942 6.29808 6.46786 6.64263 6.67344 6.77191 6.96063 7.03261 7.58831 7.88163 8.02736 8.12743 8.64656 9.03453 9.56041 11.07391 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.013288 B = 0.008244 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.701803 B = 3395.621093 C = 4820.557105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.082 3.918 3 C -0.183 4.183 4 N -0.511 5.511 5 C 0.156 3.844 6 C -0.506 4.506 7 H 0.081 0.919 8 C 0.070 3.930 9 N -0.899 5.899 10 Si 0.868 3.132 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.094 3.906 15 C 0.173 3.827 16 C -0.156 4.156 17 C 0.010 3.990 18 Cl -0.062 7.062 19 C -0.177 4.177 20 C 0.114 3.886 21 N -0.462 5.462 22 H 0.047 0.953 23 H 0.049 0.951 24 H 0.061 0.939 25 H 0.101 0.899 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.046 0.954 29 H -0.006 1.006 30 H 0.023 0.977 31 H 0.263 0.737 32 H 0.046 0.954 33 H 0.090 0.910 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.976 6.261 12.797 15.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.026 4.026 3 C -0.242 4.242 4 N -0.234 5.234 5 C 0.030 3.970 6 C -0.544 4.544 7 H 0.099 0.901 8 C -0.131 4.131 9 N -0.538 5.538 10 Si 0.695 3.305 11 H -0.201 1.201 12 H -0.211 1.211 13 H -0.192 1.192 14 C -0.035 4.035 15 C 0.034 3.966 16 C -0.177 4.177 17 C -0.025 4.025 18 Cl -0.033 7.033 19 C -0.197 4.197 20 C -0.044 4.044 21 N -0.171 5.171 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.080 0.920 25 H 0.119 0.881 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.011 0.989 30 H 0.040 0.960 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.108 0.892 34 H 0.158 0.842 35 H 0.159 0.841 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -7.678 5.765 12.286 15.593 hybrid contribution 2.395 0.795 1.141 2.770 sum -5.283 6.560 13.427 15.850 Atomic orbital electron populations 1.21851 0.95572 1.02085 1.00234 1.21646 0.94188 0.91783 0.94981 1.22478 1.02140 0.98611 1.00958 1.62053 1.17935 1.44333 0.99122 1.20295 0.83040 0.95790 0.97844 1.20998 0.93884 1.24521 1.14987 0.90064 1.24869 0.98443 0.94822 0.95014 1.69890 1.20573 1.33072 1.30305 0.86973 0.82644 0.80139 0.80768 1.20064 1.21146 1.19196 1.21016 1.01951 0.92156 0.88357 1.21274 0.87675 0.93522 0.94132 1.21988 1.00333 1.00576 0.94849 1.21246 0.88967 0.98334 0.93965 1.98379 1.38270 1.97240 1.69451 1.22013 0.93205 1.01500 1.03032 1.22773 0.97097 0.94840 0.89675 1.67506 1.29376 1.05171 1.15075 0.93386 0.93159 0.91983 0.88104 0.92194 0.92785 0.93464 0.98863 0.95952 0.92694 0.93637 0.89167 0.84159 0.84141 0.82055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.18 37.15 0.34 -1.81 16 2 C 0.08 1.51 2.77 -67.72 -0.19 1.32 16 3 C -0.18 -2.93 8.52 37.16 0.32 -2.61 16 4 N -0.51 -10.38 4.35 -229.52 -1.00 -11.38 16 5 C 0.16 3.69 3.50 -4.98 -0.02 3.67 16 6 C -0.51 -14.19 8.91 -34.44 -0.31 -14.49 16 7 H 0.08 2.49 7.43 -52.48 -0.39 2.10 16 8 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 9 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 10 Si 0.87 21.43 27.47 -169.99 -4.67 16.76 16 11 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 14 C 0.09 1.59 3.87 -4.97 -0.02 1.57 16 15 C 0.17 2.94 5.96 -82.60 -0.49 2.45 16 16 C -0.16 -2.53 8.24 -39.41 -0.32 -2.86 16 17 C 0.01 0.14 6.37 -39.17 -0.25 -0.11 16 18 Cl -0.06 -0.84 29.02 -51.86 -1.50 -2.34 16 19 C -0.18 -2.26 9.94 -39.41 -0.39 -2.65 16 20 C 0.11 1.52 11.18 -17.56 -0.20 1.32 16 21 N -0.46 -7.61 10.27 -9.49 -0.10 -7.71 16 22 H 0.05 0.68 6.29 -51.93 -0.33 0.35 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 25 H 0.10 2.15 6.63 -51.93 -0.34 1.80 16 26 H 0.06 1.06 6.62 -51.93 -0.34 0.72 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.67 6.74 -51.93 -0.35 0.32 16 29 H -0.01 -0.15 5.50 -51.93 -0.29 -0.43 16 30 H 0.02 0.54 5.70 -51.93 -0.30 0.24 16 31 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 32 H 0.05 0.73 7.24 -51.93 -0.38 0.35 16 33 H 0.09 1.40 5.88 -51.93 -0.31 1.09 16 34 H 0.14 2.21 7.95 -52.49 -0.42 1.79 16 35 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 304.58 15.07 4.59 4.59 Total: -1.00 -30.81 304.58 -8.25 -39.06 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -4.72 Total: 0.02 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -1.63 Total: -12.28 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: -0.32 Total: -45.81 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.50 Total: -2.34 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.81 -8.25 -39.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086129956.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.501 kcal (2) G-P(sol) polarization free energy of solvation -30.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds