Wall clock time and date at job start Mon Mar 30 2020 06:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47107 * 2 1 4 4 N 1.46900 * 109.47436 * 119.99650 * 2 1 3 5 5 C 1.46894 * 111.00644 * 169.04778 * 4 2 1 6 6 C 1.50707 * 109.47027 * 293.95546 * 5 4 2 7 7 H 1.08003 * 119.99723 * 0.02562 * 6 5 4 8 8 C 1.37871 * 119.99874 * 179.97438 * 6 5 4 9 9 N 1.31522 * 119.99685 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 120.00397 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.46921 * 90.00254 * 10 8 6 12 12 H 1.48498 * 109.47217 * 210.00334 * 10 8 6 13 13 H 1.48502 * 109.46913 * 329.99876 * 10 8 6 14 14 C 1.46905 * 111.00105 * 293.00291 * 4 2 1 15 15 C 1.50698 * 109.47483 * 159.88855 * 14 4 2 16 16 C 1.38168 * 119.60990 * 94.91831 * 15 14 4 17 17 C 1.38782 * 119.13988 * 179.75084 * 16 15 14 18 18 Cl 1.73599 * 120.80184 * 180.28347 * 17 16 15 19 19 C 1.38813 * 118.39639 * 0.51775 * 17 16 15 20 20 C 1.38131 * 119.14536 * 359.74970 * 19 17 16 21 21 N 1.31885 * 119.61187 * 275.19693 * 15 14 4 22 22 H 1.08998 * 109.47537 * 300.03615 * 1 2 3 23 23 H 1.08995 * 109.47268 * 60.04055 * 1 2 3 24 24 H 1.09008 * 109.47232 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47254 * 239.99808 * 2 1 3 26 26 H 1.09002 * 109.47359 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.46868 * 299.99761 * 3 2 1 28 28 H 1.08998 * 109.47669 * 59.99526 * 3 2 1 29 29 H 1.09002 * 109.47327 * 53.95039 * 5 4 2 30 30 H 1.09000 * 109.47404 * 173.95442 * 5 4 2 31 31 H 0.96998 * 119.99693 * 179.97438 * 9 8 6 32 32 H 1.09001 * 109.47191 * 279.89166 * 14 4 2 33 33 H 1.09004 * 109.46988 * 39.88729 * 14 4 2 34 34 H 1.07994 * 120.42617 * 0.02798 * 16 15 14 35 35 H 1.08001 * 120.42963 * 179.76499 * 19 17 16 36 36 H 1.07994 * 119.60875 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 3.4645 -0.9418 1.1104 6 6 3.7379 -1.9187 -0.0042 7 1 2.9201 -2.3142 -0.5882 8 6 5.0321 -2.3065 -0.2789 9 7 5.2706 -3.1594 -1.2513 10 14 6.4469 -1.6207 0.7299 11 1 6.6944 -2.5026 1.8988 12 1 7.6695 -1.5580 -0.1106 13 1 6.1014 -0.2563 1.2035 14 6 1.6899 0.0634 2.4152 15 6 1.7446 -0.8554 3.6084 16 6 2.9012 -0.9296 4.3605 17 6 2.9391 -1.7751 5.4604 18 17 4.3673 -1.8963 6.4397 19 6 1.8090 -2.5252 5.7556 20 6 0.6912 -2.4018 4.9536 21 7 0.6897 -1.5835 3.9191 22 1 -0.3634 0.5144 0.8896 23 1 -0.3633 0.5132 -0.8903 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 3.1299 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8901 28 1 1.6766 1.9564 0.8899 29 1 3.9832 -0.0048 0.9076 30 1 3.8203 -1.3574 2.0532 31 1 6.1812 -3.4320 -1.4448 32 1 2.4087 0.8723 2.5463 33 1 0.6869 0.4801 2.3231 34 1 3.7631 -0.3339 4.0986 35 1 1.8037 -3.1965 6.6016 36 1 -0.1922 -2.9815 5.1767 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086129956.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:25 Heat of formation + Delta-G solvation = 12.219618 kcal Electronic energy + Delta-G solvation = -18574.382326 eV Core-core repulsion = 15697.658688 eV Total energy + Delta-G solvation = -2876.723638 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.34713 -39.26830 -37.75213 -34.84977 -33.75533 -33.12690 -32.02366 -29.63588 -27.95538 -26.70593 -24.66504 -23.67791 -23.12103 -20.36496 -18.84854 -18.10499 -17.73804 -16.91984 -16.45970 -16.40018 -15.89183 -15.12114 -15.01364 -14.75455 -14.69168 -14.40565 -14.01980 -13.62587 -13.38191 -13.23843 -13.06467 -12.82691 -12.67919 -12.45842 -12.14804 -12.03480 -11.95531 -11.85398 -11.50279 -11.28559 -10.77991 -10.53249 -10.46030 -10.06629 -8.94561 -8.28526 -6.30085 0.01468 0.06061 0.87752 1.31182 1.31620 1.41389 2.31842 2.60940 3.05286 3.28164 3.39490 3.70672 3.86104 4.03664 4.13327 4.28647 4.35095 4.44285 4.55387 4.56374 4.70888 4.73602 4.80674 4.87010 4.92314 4.95728 5.04352 5.07690 5.24603 5.41968 5.52400 5.56219 5.59666 6.02201 6.43317 6.66540 6.76158 7.00103 7.32638 8.88276 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.013288 B = 0.008244 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.701803 B = 3395.621093 C = 4820.557105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.078 3.922 3 C -0.174 4.174 4 N -0.529 5.529 5 C 0.172 3.828 6 C -0.508 4.508 7 H 0.036 0.964 8 C 0.010 3.990 9 N -0.948 5.948 10 Si 0.934 3.066 11 H -0.269 1.269 12 H -0.281 1.281 13 H -0.245 1.245 14 C 0.098 3.902 15 C 0.150 3.850 16 C -0.173 4.173 17 C -0.001 4.001 18 Cl -0.054 7.054 19 C -0.165 4.165 20 C 0.111 3.889 21 N -0.486 5.486 22 H 0.066 0.934 23 H 0.072 0.928 24 H 0.043 0.957 25 H 0.057 0.943 26 H 0.038 0.962 27 H 0.073 0.927 28 H 0.070 0.930 29 H -0.004 1.004 30 H 0.021 0.979 31 H 0.265 0.735 32 H 0.057 0.943 33 H 0.106 0.894 34 H 0.138 0.862 35 H 0.174 0.826 36 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.434 7.438 15.150 18.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.031 4.031 3 C -0.233 4.233 4 N -0.253 5.253 5 C 0.045 3.955 6 C -0.546 4.546 7 H 0.054 0.946 8 C -0.187 4.187 9 N -0.589 5.589 10 Si 0.758 3.242 11 H -0.194 1.194 12 H -0.207 1.207 13 H -0.169 1.169 14 C -0.030 4.030 15 C 0.012 3.988 16 C -0.194 4.194 17 C -0.036 4.036 18 Cl -0.025 7.025 19 C -0.186 4.186 20 C -0.046 4.046 21 N -0.196 5.196 22 H 0.085 0.915 23 H 0.091 0.909 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.057 0.943 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.014 0.986 30 H 0.039 0.961 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.124 0.876 34 H 0.156 0.844 35 H 0.191 0.809 36 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -8.157 6.965 14.647 18.154 hybrid contribution 2.422 0.343 0.423 2.482 sum -5.735 7.308 15.070 17.703 Atomic orbital electron populations 1.21750 0.93056 1.01572 1.02217 1.21637 0.96134 0.92610 0.92680 1.22374 1.00673 0.97152 1.03092 1.61919 1.15598 1.46553 1.01206 1.19963 0.85596 0.94366 0.95589 1.21239 0.92778 1.24974 1.15656 0.94561 1.25760 1.01501 0.95184 0.96221 1.70049 1.21355 1.35046 1.32467 0.85905 0.78787 0.80478 0.79081 1.19407 1.20698 1.16889 1.21040 1.02941 0.92204 0.86814 1.21263 0.88413 0.94525 0.94601 1.22036 1.00153 1.01475 0.95781 1.21437 0.89944 0.98385 0.93835 1.98381 1.37894 1.97180 1.69002 1.22403 0.92064 1.00720 1.03380 1.23416 0.98542 0.94059 0.88604 1.67494 1.29543 1.06029 1.16488 0.91537 0.90925 0.93763 0.92450 0.94313 0.90840 0.91109 0.98627 0.96061 0.92576 0.92543 0.87647 0.84387 0.80860 0.78540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.81 9.18 71.98 0.66 -3.15 16 2 C 0.08 2.85 2.77 44.91 0.12 2.98 16 3 C -0.17 -5.32 8.52 71.98 0.61 -4.71 16 4 N -0.53 -21.49 4.35 -880.07 -3.83 -25.32 16 5 C 0.17 8.15 3.50 85.56 0.30 8.45 16 6 C -0.51 -29.58 8.91 25.60 0.23 -29.35 16 7 H 0.04 2.37 7.43 -2.91 -0.02 2.35 16 8 C 0.01 0.61 5.47 84.65 0.46 1.08 16 9 N -0.95 -59.99 13.96 21.45 0.30 -59.69 16 10 Si 0.93 44.38 27.47 68.60 1.88 46.26 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 13 H -0.25 -10.70 6.54 99.48 0.65 -10.05 16 14 C 0.10 3.18 3.87 85.56 0.33 3.52 16 15 C 0.15 4.91 5.96 42.53 0.25 5.16 16 16 C -0.17 -5.38 8.24 22.38 0.18 -5.20 16 17 C 0.00 -0.04 6.37 22.54 0.14 0.11 16 18 Cl -0.05 -1.32 29.02 -2.72 -0.08 -1.40 16 19 C -0.17 -3.73 9.94 22.38 0.22 -3.51 16 20 C 0.11 2.67 11.18 84.66 0.95 3.61 16 21 N -0.49 -15.18 10.27 -183.95 -1.89 -17.07 16 22 H 0.07 1.72 6.29 -2.39 -0.02 1.71 16 23 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 25 H 0.06 2.58 6.63 -2.39 -0.02 2.57 16 26 H 0.04 1.33 6.62 -2.39 -0.02 1.32 16 27 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 28 H 0.07 1.82 6.74 -2.39 -0.02 1.80 16 29 H 0.00 -0.18 5.50 -2.39 -0.01 -0.19 16 30 H 0.02 1.02 5.70 -2.39 -0.01 1.01 16 31 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 32 H 0.06 1.69 7.24 -2.39 -0.02 1.68 16 33 H 0.11 3.03 5.88 -2.39 -0.01 3.02 16 34 H 0.14 4.20 7.95 -2.91 -0.02 4.18 16 35 H 0.17 2.69 8.06 -2.91 -0.02 2.66 16 36 H 0.20 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -69.03 304.58 1.88 -67.16 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 1.02 Total: 11.07 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: 4.47 Total: -21.01 kcal Atomic # 7 Polarization: -96.66 SS G_CDS: -5.42 Total: -102.08 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.88 Total: 46.26 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.40 kcal Total: -69.03 1.88 -67.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086129956.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.378 kcal (2) G-P(sol) polarization free energy of solvation -69.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds