Wall clock time and date at job start Mon Mar 30 2020 06:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47474 * 90.00322 * 8 6 4 10 10 H 1.48510 * 109.47116 * 210.00055 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99887 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.46904 * 110.99963 * 183.95369 * 12 2 1 14 14 C 1.46905 * 110.99800 * 60.00278 * 12 2 1 15 15 C 1.50700 * 109.47326 * 189.99540 * 14 12 2 16 16 C 1.38126 * 120.03383 * 259.72722 * 15 14 12 17 17 C 1.38361 * 120.05819 * 179.77019 * 16 15 14 18 18 Cl 1.73601 * 119.93674 * 180.22772 * 17 16 15 19 19 C 1.38399 * 120.12360 * 0.50679 * 17 16 15 20 20 C 1.38080 * 120.06347 * 359.74087 * 19 17 16 21 21 C 1.38877 * 120.02351 * 79.99969 * 15 14 12 22 22 N 1.39737 * 120.06585 * 0.02562 * 21 15 14 23 23 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 25 25 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 26 26 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 27 27 H 1.08998 * 109.46991 * 60.00787 * 13 12 2 28 28 H 1.08998 * 109.46942 * 180.02562 * 13 12 2 29 29 H 1.08998 * 109.47155 * 300.00314 * 13 12 2 30 30 H 1.08997 * 109.47089 * 310.00066 * 14 12 2 31 31 H 1.09006 * 109.47115 * 69.99884 * 14 12 2 32 32 H 1.07997 * 119.96828 * 359.97438 * 16 15 14 33 33 H 1.08001 * 119.96715 * 179.73106 * 19 17 16 34 34 H 1.07999 * 120.03273 * 179.97438 * 20 19 17 35 35 H 0.96999 * 119.99985 * 359.97438 * 22 21 15 36 36 H 0.97004 * 120.00046 * 180.02562 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.6305 -0.5440 4.4119 10 1 1.3445 -0.9489 5.1124 11 1 2.4880 -2.5653 3.7122 12 7 2.0196 -0.6926 -1.1994 13 6 3.4851 -0.7946 -1.1870 14 6 1.5486 -0.0265 -2.4211 15 6 1.8580 -0.8912 -3.6159 16 6 2.9561 -0.6118 -4.4058 17 6 3.2433 -1.4082 -5.5002 18 17 4.6276 -1.0576 -6.4873 19 6 2.4257 -2.4803 -5.8127 20 6 1.3238 -2.7612 -5.0295 21 6 1.0359 -1.9664 -3.9271 22 7 -0.0792 -2.2477 -3.1333 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.7082 1.1609 3.4844 27 1 3.8029 -1.3533 -0.3067 28 1 3.8209 -1.3110 -2.0862 29 1 3.9187 0.2050 -1.1591 30 1 0.4722 0.1323 -2.3564 31 1 2.0519 0.9345 -2.5281 32 1 3.5929 0.2272 -4.1671 33 1 2.6498 -3.0977 -6.6700 34 1 0.6859 -3.5977 -5.2740 35 1 -0.2796 -1.6920 -2.3640 36 1 -0.6526 -2.9992 -3.3513 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086549417.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:22 Heat of formation + Delta-G solvation = 20.806989 kcal Electronic energy + Delta-G solvation = -18438.508984 eV Core-core repulsion = 15562.157722 eV Total energy + Delta-G solvation = -2876.351262 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.59365 -36.91167 -36.21707 -34.01778 -33.05106 -31.20827 -29.11480 -28.35055 -26.75941 -24.69958 -23.39612 -22.27820 -20.89359 -19.36427 -16.99167 -16.89110 -16.38961 -15.68565 -15.17926 -14.26941 -14.14883 -13.97633 -13.82093 -13.44037 -13.13100 -12.56738 -12.47814 -11.94704 -11.87782 -11.75260 -11.21303 -11.10241 -10.98218 -10.80253 -10.73122 -10.48133 -10.19537 -10.10014 -9.97723 -9.83447 -8.96009 -8.69496 -8.44991 -7.28079 -7.16314 -6.04981 -4.09394 1.49282 1.62915 2.43537 3.28131 3.35024 3.38989 3.88619 4.14996 4.38955 4.91593 5.00815 5.15409 5.28092 5.36701 5.58556 5.71830 5.85107 6.05475 6.18635 6.25024 6.32259 6.40079 6.45998 6.61660 6.74634 6.80595 6.88862 6.91981 7.08276 7.45008 7.64658 7.68940 7.79696 8.03453 8.13538 8.27638 8.55030 8.97389 9.56009 11.01714 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.028770 B = 0.004662 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.999318 B = 6004.422195 C = 6421.329804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.210 3.790 3 H -0.001 1.001 4 C -0.502 4.502 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.530 5.530 13 C 0.038 3.962 14 C 0.090 3.910 15 C -0.131 4.131 16 C -0.057 4.057 17 C -0.098 4.098 18 Cl -0.094 7.094 19 C -0.067 4.067 20 C -0.198 4.198 21 C 0.248 3.752 22 N -0.863 5.863 23 H 0.008 0.992 24 H 0.087 0.913 25 H 0.034 0.966 26 H 0.260 0.740 27 H 0.074 0.926 28 H 0.046 0.954 29 H 0.011 0.989 30 H 0.079 0.921 31 H 0.032 0.968 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.410 0.590 36 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.195 -4.443 -14.648 15.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.105 3.895 3 H 0.016 0.984 4 C -0.541 4.541 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.255 5.255 13 C -0.110 4.110 14 C -0.038 4.038 15 C -0.137 4.137 16 C -0.077 4.077 17 C -0.127 4.127 18 Cl -0.065 7.065 19 C -0.086 4.086 20 C -0.221 4.221 21 C 0.140 3.860 22 N -0.400 5.400 23 H 0.026 0.974 24 H 0.106 0.894 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.065 0.935 29 H 0.029 0.971 30 H 0.097 0.903 31 H 0.050 0.950 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.241 0.759 36 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 0.037 -4.748 -14.547 15.303 hybrid contribution 0.517 0.331 1.020 1.190 sum 0.555 -4.417 -13.528 14.241 Atomic orbital electron populations 1.21896 0.97946 0.99430 1.00045 1.19274 0.92148 0.92145 0.85975 0.98381 1.21142 1.30981 1.12282 0.89657 0.91855 1.24924 0.95191 0.95077 0.99011 1.69882 1.36913 1.23071 1.23434 0.86532 0.78484 0.80078 0.82519 1.20793 1.21290 1.19875 1.62214 1.09732 1.52151 1.01369 1.22199 0.88510 0.99030 1.01281 1.20942 1.00810 0.93494 0.88516 1.19379 0.96676 0.98663 0.98964 1.20691 0.96017 0.98448 0.92565 1.20456 0.93470 1.01203 0.97550 1.98319 1.43079 1.94949 1.70163 1.20613 0.93502 0.95477 0.99040 1.20433 1.00956 1.02965 0.97766 1.17632 0.87096 0.91916 0.89391 1.42679 1.28118 1.36261 1.32982 0.97355 0.89449 0.94736 0.92987 0.90761 0.93543 0.97082 0.90285 0.94986 0.85635 0.85725 0.85786 0.75868 0.77908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.76 37.16 0.33 -2.74 16 2 C 0.21 5.08 2.06 -68.86 -0.14 4.94 16 3 H 0.00 -0.04 8.14 -51.93 -0.42 -0.46 16 4 C -0.50 -13.34 7.93 -34.44 -0.27 -13.61 16 5 H 0.06 1.70 6.39 -52.49 -0.34 1.36 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 7 N -0.89 -24.85 11.32 55.43 0.63 -24.23 16 8 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 N -0.53 -10.86 4.61 -237.72 -1.10 -11.95 16 13 C 0.04 0.76 9.01 60.07 0.54 1.30 16 14 C 0.09 1.59 4.21 -4.97 -0.02 1.57 16 15 C -0.13 -2.06 4.59 -104.43 -0.48 -2.54 16 16 C -0.06 -0.84 8.42 -39.58 -0.33 -1.18 16 17 C -0.10 -1.35 6.32 -39.48 -0.25 -1.60 16 18 Cl -0.09 -1.18 28.95 -51.86 -1.50 -2.69 16 19 C -0.07 -0.83 9.82 -39.58 -0.39 -1.22 16 20 C -0.20 -2.48 9.90 -39.39 -0.39 -2.87 16 21 C 0.25 3.55 6.74 -83.76 -0.56 2.98 16 22 N -0.86 -11.24 9.00 32.42 0.29 -10.95 16 23 H 0.01 0.15 6.20 -51.93 -0.32 -0.17 16 24 H 0.09 2.22 6.07 -51.93 -0.32 1.91 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 27 H 0.07 1.57 6.23 -51.93 -0.32 1.25 16 28 H 0.05 0.84 6.43 -51.93 -0.33 0.50 16 29 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.08 1.37 4.78 -51.93 -0.25 1.12 16 31 H 0.03 0.57 7.98 -51.93 -0.41 0.16 16 32 H 0.13 1.79 8.03 -52.49 -0.42 1.37 16 33 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 34 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.41 5.97 7.06 -40.82 -0.29 5.69 16 36 H 0.39 4.00 8.84 -40.82 -0.36 3.64 16 LS Contribution 304.67 15.07 4.59 4.59 Total: -1.00 -27.59 304.67 -8.79 -36.38 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -4.61 Total: 6.32 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -2.07 Total: -13.46 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: -0.18 Total: -47.13 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -1.50 Total: -2.69 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.59 -8.79 -36.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086549417.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.187 kcal (2) G-P(sol) polarization free energy of solvation -27.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds