Wall clock time and date at job start Mon Mar 30 2020 06:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47474 * 90.00322 * 8 6 4 10 10 H 1.48510 * 109.47116 * 210.00055 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99887 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.46904 * 110.99963 * 183.95369 * 12 2 1 14 14 C 1.46905 * 110.99800 * 60.00278 * 12 2 1 15 15 C 1.50700 * 109.47326 * 189.99540 * 14 12 2 16 16 C 1.38126 * 120.03383 * 259.72722 * 15 14 12 17 17 C 1.38361 * 120.05819 * 179.77019 * 16 15 14 18 18 Cl 1.73601 * 119.93674 * 180.22772 * 17 16 15 19 19 C 1.38399 * 120.12360 * 0.50679 * 17 16 15 20 20 C 1.38080 * 120.06347 * 359.74087 * 19 17 16 21 21 C 1.38877 * 120.02351 * 79.99969 * 15 14 12 22 22 N 1.39737 * 120.06585 * 0.02562 * 21 15 14 23 23 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 25 25 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 26 26 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 27 27 H 1.08998 * 109.46991 * 60.00787 * 13 12 2 28 28 H 1.08998 * 109.46942 * 180.02562 * 13 12 2 29 29 H 1.08998 * 109.47155 * 300.00314 * 13 12 2 30 30 H 1.08997 * 109.47089 * 310.00066 * 14 12 2 31 31 H 1.09006 * 109.47115 * 69.99884 * 14 12 2 32 32 H 1.07997 * 119.96828 * 359.97438 * 16 15 14 33 33 H 1.08001 * 119.96715 * 179.73106 * 19 17 16 34 34 H 1.07999 * 120.03273 * 179.97438 * 20 19 17 35 35 H 0.96999 * 119.99985 * 359.97438 * 22 21 15 36 36 H 0.97004 * 120.00046 * 180.02562 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.6305 -0.5440 4.4119 10 1 1.3445 -0.9489 5.1124 11 1 2.4880 -2.5653 3.7122 12 7 2.0196 -0.6926 -1.1994 13 6 3.4851 -0.7946 -1.1870 14 6 1.5486 -0.0265 -2.4211 15 6 1.8580 -0.8912 -3.6159 16 6 2.9561 -0.6118 -4.4058 17 6 3.2433 -1.4082 -5.5002 18 17 4.6276 -1.0576 -6.4873 19 6 2.4257 -2.4803 -5.8127 20 6 1.3238 -2.7612 -5.0295 21 6 1.0359 -1.9664 -3.9271 22 7 -0.0792 -2.2477 -3.1333 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.7082 1.1609 3.4844 27 1 3.8029 -1.3533 -0.3067 28 1 3.8209 -1.3110 -2.0862 29 1 3.9187 0.2050 -1.1591 30 1 0.4722 0.1323 -2.3564 31 1 2.0519 0.9345 -2.5281 32 1 3.5929 0.2272 -4.1671 33 1 2.6498 -3.0977 -6.6700 34 1 0.6859 -3.5977 -5.2740 35 1 -0.2796 -1.6920 -2.3640 36 1 -0.6526 -2.9992 -3.3513 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086549417.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:22 Heat of formation + Delta-G solvation = 4.012433 kcal Electronic energy + Delta-G solvation = -18439.237250 eV Core-core repulsion = 15562.157722 eV Total energy + Delta-G solvation = -2877.079528 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.73650 -38.45520 -37.31123 -35.07099 -34.89542 -32.59388 -30.85647 -29.50842 -28.26761 -26.53922 -24.97278 -23.35926 -22.24383 -21.02868 -18.40184 -18.06590 -17.91612 -17.06146 -16.74032 -15.90328 -15.60312 -15.32019 -15.12442 -14.75150 -14.31089 -14.18249 -13.97230 -13.48120 -13.14488 -12.98707 -12.93638 -12.70673 -12.60042 -12.34527 -12.27530 -12.06080 -11.93698 -11.82483 -11.41272 -11.01686 -10.87792 -10.51725 -9.78973 -8.93281 -8.28773 -8.09340 -6.21295 0.42353 0.56754 1.40701 1.42069 1.43714 1.53607 2.42779 2.79844 3.13030 3.18627 3.51705 3.88932 3.94116 4.25414 4.42999 4.51273 4.61533 4.64799 4.73268 4.86174 4.93649 5.01912 5.08658 5.09659 5.24279 5.27552 5.41403 5.50926 5.53320 5.74235 5.81021 5.84116 6.27820 6.38749 6.63272 6.73160 6.93295 7.06255 7.47934 8.95331 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.028770 B = 0.004662 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.999318 B = 6004.422195 C = 6421.329804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.215 3.785 3 H -0.040 1.040 4 C -0.516 4.516 5 H 0.057 0.943 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.956 3.044 9 H -0.280 1.280 10 H -0.283 1.283 11 H -0.270 1.270 12 N -0.527 5.527 13 C 0.045 3.955 14 C 0.097 3.903 15 C -0.153 4.153 16 C -0.064 4.064 17 C -0.107 4.107 18 Cl -0.087 7.087 19 C -0.061 4.061 20 C -0.191 4.191 21 C 0.239 3.761 22 N -0.860 5.860 23 H 0.032 0.968 24 H 0.059 0.941 25 H 0.039 0.961 26 H 0.261 0.739 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.004 0.996 30 H 0.080 0.920 31 H 0.024 0.976 32 H 0.122 0.878 33 H 0.151 0.849 34 H 0.154 0.846 35 H 0.402 0.598 36 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.111 -6.120 -15.945 17.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.108 3.892 3 H -0.023 1.023 4 C -0.554 4.554 5 H 0.075 0.925 6 C -0.185 4.185 7 N -0.559 5.559 8 Si 0.782 3.218 9 H -0.206 1.206 10 H -0.209 1.209 11 H -0.194 1.194 12 N -0.252 5.252 13 C -0.103 4.103 14 C -0.031 4.031 15 C -0.158 4.158 16 C -0.084 4.084 17 C -0.136 4.136 18 Cl -0.058 7.058 19 C -0.080 4.080 20 C -0.214 4.214 21 C 0.130 3.870 22 N -0.397 5.397 23 H 0.051 0.949 24 H 0.078 0.922 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.022 0.978 30 H 0.099 0.901 31 H 0.042 0.958 32 H 0.140 0.860 33 H 0.168 0.832 34 H 0.171 0.829 35 H 0.232 0.768 36 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -0.051 -6.445 -15.870 17.128 hybrid contribution 0.566 0.851 1.316 1.666 sum 0.515 -5.593 -14.554 15.600 Atomic orbital electron populations 1.21677 0.96818 0.99596 0.99858 1.19084 0.92988 0.90029 0.87099 1.02292 1.21403 1.30932 1.12174 0.90909 0.92465 1.25644 0.95413 0.95745 1.01701 1.70008 1.37765 1.24165 1.23957 0.85588 0.77901 0.79098 0.79205 1.20558 1.20904 1.19411 1.62158 1.09954 1.51759 1.01293 1.22122 0.88278 0.98573 1.01372 1.20877 1.00598 0.93510 0.88108 1.19184 0.98155 0.99703 0.98804 1.20696 0.95867 0.98723 0.93115 1.20568 0.94066 1.01517 0.97446 1.98321 1.42714 1.94975 1.69795 1.20956 0.92747 0.94882 0.99417 1.20752 1.01028 1.03071 0.96570 1.17814 0.87177 0.91826 0.90143 1.42667 1.28053 1.36574 1.32443 0.94884 0.92241 0.94229 0.93008 0.92427 0.91575 0.97765 0.90146 0.95810 0.86018 0.83165 0.82877 0.76812 0.76282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 8.76 71.98 0.63 -4.92 16 2 C 0.21 10.58 2.06 44.17 0.09 10.68 16 3 H -0.04 -2.27 8.14 -2.39 -0.02 -2.29 16 4 C -0.52 -27.77 7.93 25.60 0.20 -27.57 16 5 H 0.06 3.10 6.39 -2.91 -0.02 3.08 16 6 C 0.01 0.74 5.30 84.66 0.45 1.19 16 7 N -0.92 -51.95 11.32 21.45 0.24 -51.71 16 8 Si 0.96 43.23 29.54 68.60 2.03 45.26 16 9 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 12 N -0.53 -21.70 4.61 -906.01 -4.18 -25.88 16 13 C 0.05 1.80 9.01 127.69 1.15 2.95 16 14 C 0.10 3.39 4.21 85.56 0.36 3.75 16 15 C -0.15 -4.62 4.59 -19.74 -0.09 -4.71 16 16 C -0.06 -1.82 8.42 22.27 0.19 -1.63 16 17 C -0.11 -2.72 6.32 22.34 0.14 -2.57 16 18 Cl -0.09 -2.03 28.95 -2.72 -0.08 -2.11 16 19 C -0.06 -1.31 9.82 22.27 0.22 -1.09 16 20 C -0.19 -4.14 9.90 22.40 0.22 -3.91 16 21 C 0.24 6.33 6.74 38.20 0.26 6.58 16 22 N -0.86 -20.68 9.00 -51.34 -0.46 -21.14 16 23 H 0.03 1.30 6.20 -2.39 -0.01 1.29 16 24 H 0.06 3.07 6.07 -2.39 -0.01 3.06 16 25 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 26 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 27 H 0.06 2.47 6.23 -2.39 -0.01 2.45 16 28 H 0.07 2.36 6.43 -2.39 -0.02 2.34 16 29 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.08 2.75 4.78 -2.39 -0.01 2.74 16 31 H 0.02 0.86 7.98 -2.38 -0.02 0.84 16 32 H 0.12 3.45 8.03 -2.91 -0.02 3.42 16 33 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 34 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 35 H 0.40 11.16 7.06 -92.71 -0.65 10.51 16 36 H 0.41 7.26 8.84 -92.71 -0.82 6.44 16 Total: -1.00 -58.83 304.67 1.01 -57.83 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -0.36 Total: 19.02 kcal Atomic # 6 Polarization: -25.08 SS G_CDS: 3.82 Total: -21.26 kcal Atomic # 7 Polarization: -94.33 SS G_CDS: -4.40 Total: -98.73 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 17 Polarization: -2.03 SS G_CDS: -0.08 Total: -2.11 kcal Total: -58.83 1.01 -57.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086549417.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.840 kcal (2) G-P(sol) polarization free energy of solvation -58.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds