Wall clock time and date at job start Mon Mar 30 2020 06:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46899 * 109.46986 * 2 1 4 4 C 1.46897 * 111.00429 * 163.60946 * 3 2 1 5 5 C 1.50706 * 109.47109 * 287.71007 * 4 3 2 6 6 H 1.07996 * 119.99900 * 354.53490 * 5 4 3 7 7 C 1.37878 * 120.00049 * 174.80473 * 5 4 3 8 8 N 1.31517 * 119.99861 * 359.73270 * 7 5 4 9 9 Si 1.86793 * 120.00122 * 179.72565 * 7 5 4 10 10 H 1.48503 * 109.47031 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47446 * 120.00308 * 9 7 5 12 12 H 1.48501 * 109.47107 * 240.00678 * 9 7 5 13 13 C 1.39010 * 111.00102 * 287.56201 * 3 2 1 14 14 N 1.32424 * 119.70139 * 301.59048 * 13 3 2 15 15 C 1.31946 * 121.62004 * 179.97438 * 14 13 3 16 16 C 1.38066 * 120.85477 * 0.02562 * 15 14 13 17 17 C 1.50696 * 120.33653 * 179.97438 * 16 15 14 18 18 Cl 1.80307 * 109.47343 * 270.00246 * 17 16 15 19 19 C 1.38841 * 119.32852 * 359.97438 * 16 15 14 20 20 C 1.38339 * 118.50594 * 359.74573 * 19 16 15 21 21 C 1.50694 * 120.45470 * 180.26445 * 20 19 16 22 22 H 1.09005 * 109.46963 * 185.36891 * 1 2 3 23 23 H 1.09000 * 109.47544 * 305.36473 * 1 2 3 24 24 H 1.08996 * 109.47309 * 65.37174 * 1 2 3 25 25 H 1.08994 * 109.47817 * 239.99508 * 2 1 3 26 26 H 1.09004 * 109.47149 * 119.99423 * 2 1 3 27 27 H 1.09004 * 109.47606 * 167.71014 * 4 3 2 28 28 H 1.09002 * 109.47281 * 47.71000 * 4 3 2 29 29 H 0.96997 * 119.99919 * 179.97438 * 8 7 5 30 30 H 1.07993 * 119.57342 * 179.97438 * 15 14 13 31 31 H 1.09000 * 109.47409 * 30.00345 * 17 16 15 32 32 H 1.08996 * 109.47440 * 150.00057 * 17 16 15 33 33 H 1.08001 * 120.74547 * 180.02562 * 19 16 15 34 34 H 1.08999 * 109.47188 * 274.79526 * 21 20 19 35 35 H 1.09002 * 109.47091 * 34.79184 * 21 20 19 36 36 H 1.09001 * 109.47788 * 154.79483 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4355 1.4429 0.3870 5 6 3.5652 1.1600 1.8616 6 1 2.6799 1.0449 2.4692 7 6 4.8142 1.0537 2.4359 8 7 5.8923 1.1939 1.6958 9 14 4.9750 0.7107 4.2650 10 1 3.6227 0.5955 4.8677 11 1 5.7165 -0.5599 4.4671 12 1 5.7135 1.8235 4.9142 13 6 1.8165 1.9852 -1.2373 14 7 2.3524 1.4485 -2.3228 15 6 2.1835 1.9861 -3.5159 16 6 1.4366 3.1364 -3.6749 17 6 1.2518 3.7408 -5.0429 18 17 2.5768 4.9213 -5.3626 19 6 0.8576 3.7307 -2.5617 20 6 1.0472 3.1409 -1.3248 21 6 0.4338 3.7454 -0.0882 22 1 -0.3633 -1.0232 0.0962 23 1 -0.3634 0.5948 0.8380 24 1 -0.3634 0.4282 -0.9341 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.8309 2.4355 0.1713 28 1 3.9970 0.6978 -0.1767 29 1 6.7710 1.1195 2.0999 30 1 2.6360 1.5209 -4.3790 31 1 1.2784 2.9524 -5.7952 32 1 0.2906 4.2528 -5.0872 33 1 0.2685 4.6306 -2.6599 34 1 1.0933 4.5199 0.3031 35 1 -0.5323 4.1835 -0.3389 36 1 0.2965 2.9701 0.6656 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087718663.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:54 Heat of formation + Delta-G solvation = 21.909286 kcal Electronic energy + Delta-G solvation = -18375.904151 eV Core-core repulsion = 15499.600688 eV Total energy + Delta-G solvation = -2876.303463 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.32000 -36.88661 -35.89347 -33.27806 -32.86999 -32.19742 -30.04198 -27.31462 -27.10093 -25.31708 -23.18995 -22.41437 -21.15787 -20.10764 -16.95057 -16.40603 -16.01038 -15.17545 -14.77233 -14.57996 -14.10348 -13.94506 -13.74252 -13.15219 -13.11555 -12.80271 -12.48939 -12.31213 -12.14023 -12.10178 -11.49630 -11.28142 -11.04859 -10.75051 -10.63907 -10.52750 -10.48193 -10.34184 -10.04258 -9.51114 -9.30985 -9.06489 -8.47317 -8.27216 -7.59542 -6.03854 -4.06579 1.10382 1.54386 2.43473 3.30445 3.37876 3.42268 4.05598 4.32958 4.47567 4.58469 4.66130 4.87939 5.05925 5.20770 5.31284 5.42582 5.47688 5.66338 5.79377 5.90495 5.92693 6.07810 6.08411 6.28805 6.31253 6.42702 6.61976 6.67078 6.76341 6.86956 7.25064 7.38392 7.79551 7.97507 8.10645 8.35522 8.51272 9.01351 9.57515 11.06711 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.022958 B = 0.005011 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.300101 B = 5586.011498 C = 6107.542174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.059 3.941 3 N -0.489 5.489 4 C 0.204 3.796 5 C -0.509 4.509 6 H 0.066 0.934 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.899 3.101 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.331 3.669 14 N -0.507 5.507 15 C 0.124 3.876 16 C -0.185 4.185 17 C 0.023 3.977 18 Cl -0.183 7.183 19 C -0.059 4.059 20 C -0.114 4.114 21 C -0.100 4.100 22 H 0.051 0.949 23 H 0.060 0.940 24 H 0.038 0.962 25 H 0.039 0.961 26 H 0.090 0.910 27 H 0.022 0.978 28 H 0.011 0.989 29 H 0.261 0.739 30 H 0.147 0.853 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.131 0.869 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.267 3.998 -11.078 17.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.068 4.068 3 N -0.213 5.213 4 C 0.081 3.919 5 C -0.548 4.548 6 H 0.085 0.915 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.727 3.273 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.210 1.210 13 C 0.102 3.898 14 N -0.218 5.218 15 C -0.035 4.035 16 C -0.187 4.187 17 C -0.040 4.040 18 Cl -0.156 7.156 19 C -0.085 4.085 20 C -0.118 4.118 21 C -0.157 4.157 22 H 0.070 0.930 23 H 0.080 0.920 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.108 0.892 27 H 0.040 0.960 28 H 0.029 0.971 29 H 0.071 0.929 30 H 0.164 0.836 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.149 0.851 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.725 3.562 -10.623 16.217 hybrid contribution 0.415 0.251 0.157 0.510 sum -11.310 3.813 -10.466 15.874 Atomic orbital electron populations 1.21790 0.96506 1.00683 1.01141 1.22014 0.94013 0.88639 1.02141 1.60525 1.24509 1.17745 1.18561 1.19739 0.78819 0.97044 0.96315 1.21150 0.92366 1.48399 0.92841 0.91536 1.24994 0.95710 0.95453 0.98356 1.69987 0.97797 1.50113 1.35584 0.86427 0.78174 0.77768 0.84969 1.19559 1.21082 1.21037 1.20303 0.89464 0.90974 0.89026 1.67983 1.20478 1.34033 0.99287 1.22366 0.94017 0.92157 0.94982 1.20527 1.04266 0.98963 0.94970 1.22972 0.91743 0.93805 0.95485 1.98742 1.56187 1.64419 1.96293 1.21216 0.97703 0.98333 0.91275 1.20636 0.99222 0.96059 0.95887 1.20602 0.98579 1.01425 0.95087 0.92982 0.92048 0.94280 0.94302 0.89200 0.95958 0.97070 0.92897 0.83554 0.88125 0.88293 0.85080 0.91203 0.92710 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.90 37.16 0.37 -1.90 16 2 C 0.06 1.17 5.48 -3.83 -0.02 1.15 16 3 N -0.49 -10.60 3.28 -174.56 -0.57 -11.17 16 4 C 0.20 5.40 4.56 -4.97 -0.02 5.38 16 5 C -0.51 -14.10 8.33 -34.44 -0.29 -14.39 16 6 H 0.07 1.80 7.80 -52.49 -0.41 1.39 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -26.82 13.29 55.43 0.74 -26.09 16 9 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 13 C 0.33 6.52 4.49 -155.00 -0.70 5.83 16 14 N -0.51 -9.90 9.47 -12.44 -0.12 -10.01 16 15 C 0.12 1.93 10.85 -17.57 -0.19 1.74 16 16 C -0.18 -2.42 5.28 -104.46 -0.55 -2.97 16 17 C 0.02 0.22 6.80 36.00 0.24 0.47 16 18 Cl -0.18 -2.17 29.13 -51.86 -1.51 -3.68 16 19 C -0.06 -0.81 9.55 -39.32 -0.38 -1.18 16 20 C -0.11 -1.90 5.92 -104.27 -0.62 -2.51 16 21 C -0.10 -1.47 9.84 36.00 0.35 -1.12 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 24 H 0.04 0.61 7.75 -51.93 -0.40 0.20 16 25 H 0.04 0.79 7.46 -51.93 -0.39 0.41 16 26 H 0.09 1.90 7.17 -51.93 -0.37 1.52 16 27 H 0.02 0.65 7.97 -51.93 -0.41 0.23 16 28 H 0.01 0.33 8.05 -51.93 -0.42 -0.09 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.15 1.89 8.06 -52.49 -0.42 1.47 16 31 H 0.10 0.76 8.09 -51.93 -0.42 0.34 16 32 H 0.10 0.73 8.09 -51.93 -0.42 0.31 16 33 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.05 0.64 8.12 -51.93 -0.42 0.22 16 36 H 0.09 1.44 7.34 -51.93 -0.38 1.06 16 LS Contribution 319.17 15.07 4.81 4.81 Total: -1.00 -30.94 319.17 -8.86 -39.80 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -5.30 Total: -2.06 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -1.89 Total: -8.02 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.05 Total: -47.28 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 17 Polarization: -2.17 SS G_CDS: -1.51 Total: -3.68 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.94 -8.86 -39.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087718663.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.711 kcal (2) G-P(sol) polarization free energy of solvation -30.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds