Wall clock time and date at job start Mon Mar 30 2020 06:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46899 * 109.46986 * 2 1 4 4 C 1.46897 * 111.00429 * 163.60946 * 3 2 1 5 5 C 1.50706 * 109.47109 * 287.71007 * 4 3 2 6 6 H 1.07996 * 119.99900 * 354.53490 * 5 4 3 7 7 C 1.37878 * 120.00049 * 174.80473 * 5 4 3 8 8 N 1.31517 * 119.99861 * 359.73270 * 7 5 4 9 9 Si 1.86793 * 120.00122 * 179.72565 * 7 5 4 10 10 H 1.48503 * 109.47031 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47446 * 120.00308 * 9 7 5 12 12 H 1.48501 * 109.47107 * 240.00678 * 9 7 5 13 13 C 1.39010 * 111.00102 * 287.56201 * 3 2 1 14 14 N 1.32424 * 119.70139 * 301.59048 * 13 3 2 15 15 C 1.31946 * 121.62004 * 179.97438 * 14 13 3 16 16 C 1.38066 * 120.85477 * 0.02562 * 15 14 13 17 17 C 1.50696 * 120.33653 * 179.97438 * 16 15 14 18 18 Cl 1.80307 * 109.47343 * 270.00246 * 17 16 15 19 19 C 1.38841 * 119.32852 * 359.97438 * 16 15 14 20 20 C 1.38339 * 118.50594 * 359.74573 * 19 16 15 21 21 C 1.50694 * 120.45470 * 180.26445 * 20 19 16 22 22 H 1.09005 * 109.46963 * 185.36891 * 1 2 3 23 23 H 1.09000 * 109.47544 * 305.36473 * 1 2 3 24 24 H 1.08996 * 109.47309 * 65.37174 * 1 2 3 25 25 H 1.08994 * 109.47817 * 239.99508 * 2 1 3 26 26 H 1.09004 * 109.47149 * 119.99423 * 2 1 3 27 27 H 1.09004 * 109.47606 * 167.71014 * 4 3 2 28 28 H 1.09002 * 109.47281 * 47.71000 * 4 3 2 29 29 H 0.96997 * 119.99919 * 179.97438 * 8 7 5 30 30 H 1.07993 * 119.57342 * 179.97438 * 15 14 13 31 31 H 1.09000 * 109.47409 * 30.00345 * 17 16 15 32 32 H 1.08996 * 109.47440 * 150.00057 * 17 16 15 33 33 H 1.08001 * 120.74547 * 180.02562 * 19 16 15 34 34 H 1.08999 * 109.47188 * 274.79526 * 21 20 19 35 35 H 1.09002 * 109.47091 * 34.79184 * 21 20 19 36 36 H 1.09001 * 109.47788 * 154.79483 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4355 1.4429 0.3870 5 6 3.5652 1.1600 1.8616 6 1 2.6799 1.0449 2.4692 7 6 4.8142 1.0537 2.4359 8 7 5.8923 1.1939 1.6958 9 14 4.9750 0.7107 4.2650 10 1 3.6227 0.5955 4.8677 11 1 5.7165 -0.5599 4.4671 12 1 5.7135 1.8235 4.9142 13 6 1.8165 1.9852 -1.2373 14 7 2.3524 1.4485 -2.3228 15 6 2.1835 1.9861 -3.5159 16 6 1.4366 3.1364 -3.6749 17 6 1.2518 3.7408 -5.0429 18 17 2.5768 4.9213 -5.3626 19 6 0.8576 3.7307 -2.5617 20 6 1.0472 3.1409 -1.3248 21 6 0.4338 3.7454 -0.0882 22 1 -0.3633 -1.0232 0.0962 23 1 -0.3634 0.5948 0.8380 24 1 -0.3634 0.4282 -0.9341 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.8309 2.4355 0.1713 28 1 3.9970 0.6978 -0.1767 29 1 6.7710 1.1195 2.0999 30 1 2.6360 1.5209 -4.3790 31 1 1.2784 2.9524 -5.7952 32 1 0.2906 4.2528 -5.0872 33 1 0.2685 4.6306 -2.6599 34 1 1.0933 4.5199 0.3031 35 1 -0.5323 4.1835 -0.3389 36 1 0.2965 2.9701 0.6656 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087718663.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:54 Heat of formation + Delta-G solvation = 3.812762 kcal Electronic energy + Delta-G solvation = -18376.688875 eV Core-core repulsion = 15499.600688 eV Total energy + Delta-G solvation = -2877.088187 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.63587 -38.35617 -36.86518 -34.88318 -34.52183 -33.49134 -31.65326 -29.05481 -28.19631 -26.74452 -24.57319 -24.29252 -22.47794 -21.50192 -18.74075 -17.82891 -17.67251 -16.91662 -16.05029 -15.90176 -15.43913 -15.30007 -14.86110 -14.41100 -14.34405 -14.28455 -14.05564 -13.95851 -13.44846 -13.40745 -12.92789 -12.73551 -12.69901 -12.54527 -12.35662 -12.03774 -11.87152 -11.58045 -11.46160 -11.33154 -10.66488 -10.56310 -10.45691 -9.56828 -9.34676 -8.22362 -6.34400 -0.09286 0.34666 1.41369 1.41927 1.54075 1.56563 2.38763 2.81068 3.00289 3.10402 3.49405 3.64117 3.84298 3.99958 4.16199 4.23407 4.39485 4.47184 4.54269 4.59177 4.72979 4.79719 4.91577 4.95029 5.01284 5.09679 5.14723 5.18583 5.24897 5.37432 5.46874 5.62069 5.73857 6.03401 6.11540 6.70308 6.81504 7.05853 7.35794 8.89407 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.022958 B = 0.005011 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.300101 B = 5586.011498 C = 6107.542174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.059 3.941 3 N -0.484 5.484 4 C 0.229 3.771 5 C -0.520 4.520 6 H 0.071 0.929 7 C 0.000 4.000 8 N -0.938 5.938 9 Si 0.975 3.025 10 H -0.257 1.257 11 H -0.279 1.279 12 H -0.279 1.279 13 C 0.286 3.714 14 N -0.547 5.547 15 C 0.107 3.893 16 C -0.165 4.165 17 C 0.029 3.971 18 Cl -0.201 7.201 19 C -0.052 4.052 20 C -0.122 4.122 21 C -0.096 4.096 22 H 0.075 0.925 23 H 0.065 0.935 24 H 0.042 0.958 25 H 0.022 0.978 26 H 0.068 0.932 27 H -0.015 1.015 28 H -0.033 1.033 29 H 0.264 0.736 30 H 0.167 0.833 31 H 0.125 0.875 32 H 0.133 0.867 33 H 0.172 0.828 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.656 5.027 -11.582 19.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.068 4.068 3 N -0.207 5.207 4 C 0.104 3.896 5 C -0.558 4.558 6 H 0.089 0.911 7 C -0.197 4.197 8 N -0.578 5.578 9 Si 0.799 3.201 10 H -0.181 1.181 11 H -0.205 1.205 12 H -0.204 1.204 13 C 0.059 3.941 14 N -0.259 5.259 15 C -0.052 4.052 16 C -0.167 4.167 17 C -0.034 4.034 18 Cl -0.174 7.174 19 C -0.078 4.078 20 C -0.125 4.125 21 C -0.153 4.153 22 H 0.094 0.906 23 H 0.084 0.916 24 H 0.061 0.939 25 H 0.041 0.959 26 H 0.086 0.914 27 H 0.003 0.997 28 H -0.015 1.015 29 H 0.073 0.927 30 H 0.184 0.816 31 H 0.144 0.856 32 H 0.151 0.849 33 H 0.190 0.810 34 H 0.080 0.920 35 H 0.112 0.888 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.147 4.591 -11.139 18.582 hybrid contribution 1.131 -0.042 0.131 1.140 sum -13.016 4.550 -11.008 17.643 Atomic orbital electron populations 1.21635 0.92866 1.02354 1.01489 1.22015 0.96886 0.87649 1.00209 1.60402 1.20785 1.18614 1.20916 1.19194 0.81663 0.93244 0.95511 1.21444 0.92746 1.48152 0.93463 0.91090 1.25998 0.95174 0.94900 1.03674 1.70139 0.98474 1.51211 1.38008 0.85246 0.78734 0.77662 0.78445 1.18063 1.20510 1.20447 1.20355 0.92512 0.92987 0.88290 1.67810 1.21719 1.35694 1.00654 1.22816 0.94760 0.93406 0.94212 1.20876 1.01598 0.97375 0.96884 1.23227 0.92257 0.94335 0.93583 1.98753 1.57398 1.65069 1.96221 1.21672 0.97165 0.98974 0.89961 1.20879 0.98796 0.94955 0.97908 1.20599 1.00212 1.00567 0.93927 0.90576 0.91609 0.93862 0.95942 0.91362 0.99714 1.01519 0.92689 0.81610 0.85641 0.84902 0.81043 0.91969 0.88828 0.91320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.92 9.90 71.98 0.71 -3.20 16 2 C 0.06 2.46 5.48 86.30 0.47 2.93 16 3 N -0.48 -22.03 3.28 -706.19 -2.31 -24.35 16 4 C 0.23 12.99 4.56 85.56 0.39 13.38 16 5 C -0.52 -30.01 8.33 25.60 0.21 -29.80 16 6 H 0.07 3.94 7.80 -2.91 -0.02 3.92 16 7 C 0.00 0.02 5.46 84.65 0.46 0.48 16 8 N -0.94 -58.46 13.29 21.45 0.28 -58.17 16 9 Si 0.98 44.69 29.54 68.60 2.03 46.72 16 10 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 13 C 0.29 11.61 4.49 133.04 0.60 12.21 16 14 N -0.55 -22.12 9.47 -193.26 -1.83 -23.95 16 15 C 0.11 3.26 10.85 84.63 0.92 4.18 16 16 C -0.17 -3.88 5.28 -19.76 -0.10 -3.98 16 17 C 0.03 0.42 6.80 71.23 0.48 0.91 16 18 Cl -0.20 -4.24 29.13 -2.72 -0.08 -4.32 16 19 C -0.05 -1.26 9.55 22.44 0.21 -1.05 16 20 C -0.12 -3.93 5.92 -19.64 -0.12 -4.05 16 21 C -0.10 -2.71 9.84 71.23 0.70 -2.01 16 22 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 23 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.04 1.30 7.75 -2.39 -0.02 1.28 16 25 H 0.02 0.97 7.46 -2.39 -0.02 0.96 16 26 H 0.07 3.04 7.17 -2.38 -0.02 3.02 16 27 H -0.02 -0.96 7.97 -2.39 -0.02 -0.98 16 28 H -0.03 -2.12 8.05 -2.39 -0.02 -2.14 16 29 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 30 H 0.17 4.14 8.06 -2.91 -0.02 4.11 16 31 H 0.13 1.33 8.09 -2.39 -0.02 1.31 16 32 H 0.13 1.19 8.09 -2.39 -0.02 1.17 16 33 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 34 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.09 1.87 8.12 -2.39 -0.02 1.85 16 36 H 0.07 2.21 7.34 -2.39 -0.02 2.19 16 Total: -1.00 -72.26 319.17 4.09 -68.17 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: 1.06 Total: 5.89 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: 4.95 Total: -9.99 kcal Atomic # 7 Polarization: -102.60 SS G_CDS: -3.86 Total: -106.46 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 17 Polarization: -4.24 SS G_CDS: -0.08 Total: -4.32 kcal Total: -72.26 4.09 -68.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087718663.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.984 kcal (2) G-P(sol) polarization free energy of solvation -72.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds