Wall clock time and date at job start Mon Mar 30 2020 06:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47479 * 2 1 4 4 N 1.46503 * 109.47058 * 120.00719 * 2 1 3 5 5 C 1.46506 * 119.99395 * 301.23047 * 4 2 1 6 6 C 1.50702 * 109.47214 * 270.00351 * 5 4 2 7 7 H 1.07997 * 119.99506 * 0.02562 * 6 5 4 8 8 C 1.37873 * 119.99930 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00129 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00007 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47046 * 60.00385 * 10 8 6 12 12 H 1.48508 * 109.47106 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47582 * 300.00071 * 10 8 6 14 14 C 1.38997 * 120.00343 * 121.23537 * 4 2 1 15 15 C 1.39134 * 119.70407 * 349.02791 * 14 4 2 16 16 C 1.38301 * 119.09370 * 179.97438 * 15 14 4 17 17 C 1.38877 * 118.50810 * 359.97438 * 16 15 14 18 18 C 1.50705 * 120.33770 * 180.02562 * 17 16 15 19 19 Cl 1.80295 * 109.47067 * 90.00036 * 18 17 16 20 20 C 1.38027 * 119.32975 * 0.02562 * 17 16 15 21 21 N 1.31966 * 120.85281 * 359.97438 * 20 17 16 22 22 H 1.09005 * 109.47014 * 300.00115 * 1 2 3 23 23 H 1.08999 * 109.46812 * 59.99343 * 1 2 3 24 24 H 1.08996 * 109.47890 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47014 * 239.99885 * 2 1 3 26 26 H 1.09008 * 109.46957 * 180.02562 * 3 2 1 27 27 H 1.08994 * 109.46964 * 299.99951 * 3 2 1 28 28 H 1.08999 * 109.46925 * 60.00318 * 3 2 1 29 29 H 1.09001 * 109.46961 * 30.00309 * 5 4 2 30 30 H 1.09003 * 109.46522 * 150.00230 * 5 4 2 31 31 H 0.96996 * 120.00189 * 179.97438 * 9 8 6 32 32 H 1.08003 * 120.45464 * 0.24813 * 15 14 4 33 33 H 1.08007 * 120.74723 * 180.02562 * 16 15 14 34 34 H 1.08995 * 109.47143 * 210.00285 * 18 17 16 35 35 H 1.09002 * 109.47163 * 330.00024 * 18 17 16 36 36 H 1.07996 * 119.56980 * 179.97438 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6908 1.1961 5 6 1.6422 -0.2062 2.5266 6 6 2.6586 0.8005 3.0005 7 1 3.5003 1.0542 2.3732 8 6 2.5140 1.3974 4.2348 9 7 1.4892 1.0880 4.9989 10 14 3.7742 2.6446 4.8226 11 1 3.8193 3.7870 3.8748 12 1 3.3935 3.1350 6.1717 13 1 5.1119 2.0032 4.8889 14 6 2.8385 -1.8057 1.0687 15 6 3.0075 -2.3984 -0.1787 16 6 3.8268 -3.5069 -0.2912 17 6 4.4526 -3.9872 0.8518 18 6 5.3546 -5.1921 0.7764 19 17 7.0444 -4.6581 0.4445 20 6 4.2401 -3.3499 2.0575 21 7 3.4528 -2.2937 2.1352 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3635 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 3.1302 1.4423 -0.0005 27 1 1.6768 1.9562 -0.8899 28 1 1.6768 1.9562 0.8900 29 1 0.6602 0.2644 2.4776 30 1 1.6091 -1.0445 3.2225 31 1 1.3876 1.5076 5.8675 32 1 2.5091 -1.9956 -1.0482 33 1 3.9773 -3.9877 -1.2465 34 1 5.3230 -5.7296 1.7241 35 1 5.0171 -5.8491 -0.0252 36 1 4.7245 -3.7204 2.9488 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087718675.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:13 Heat of formation + Delta-G solvation = 26.290685 kcal Electronic energy + Delta-G solvation = -18391.736204 eV Core-core repulsion = 15515.622733 eV Total energy + Delta-G solvation = -2876.113471 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.83980 -37.13101 -35.75670 -33.03633 -32.70876 -31.46083 -30.33325 -27.42001 -26.72035 -25.40196 -23.64118 -22.04857 -21.60911 -19.27523 -17.14194 -16.40053 -16.09777 -15.06677 -14.67800 -14.45386 -14.34913 -13.81442 -13.66266 -13.36649 -12.96631 -12.59447 -12.55254 -12.27190 -12.00578 -11.59585 -11.57422 -11.13606 -11.02841 -10.82854 -10.58326 -10.39986 -10.31443 -10.25277 -9.99116 -9.68251 -9.32276 -8.96041 -8.61571 -8.37203 -6.78903 -5.96744 -4.01203 1.57707 1.83993 2.74800 3.33907 3.38321 3.42071 3.74480 4.46223 4.50345 4.83969 4.93888 5.08751 5.25757 5.31120 5.35336 5.40759 5.54703 5.60402 5.63866 5.87283 6.00839 6.12923 6.21715 6.24140 6.37667 6.40395 6.58446 6.66011 6.89120 7.02291 7.18245 7.48912 7.86572 7.99848 8.29521 8.32057 8.89017 9.03553 9.61718 11.08726 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.016874 B = 0.005944 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.980472 B = 4709.504390 C = 5724.309251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 C -0.157 4.157 4 N -0.579 5.579 5 C 0.255 3.745 6 C -0.509 4.509 7 H 0.056 0.944 8 C 0.060 3.940 9 N -0.898 5.898 10 Si 0.892 3.108 11 H -0.279 1.279 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.428 3.572 15 C -0.264 4.264 16 C -0.015 4.015 17 C -0.259 4.259 18 C 0.037 3.963 19 Cl -0.201 7.201 20 C 0.178 3.822 21 N -0.517 5.517 22 H 0.068 0.932 23 H 0.059 0.941 24 H 0.052 0.948 25 H 0.076 0.924 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.080 0.920 29 H 0.031 0.969 30 H 0.042 0.958 31 H 0.262 0.738 32 H 0.127 0.873 33 H 0.122 0.878 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.101 -9.171 -11.233 14.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 C -0.215 4.215 4 N -0.286 5.286 5 C 0.136 3.864 6 C -0.548 4.548 7 H 0.074 0.926 8 C -0.141 4.141 9 N -0.538 5.538 10 Si 0.720 3.280 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.203 1.203 14 C 0.191 3.809 15 C -0.290 4.290 16 C -0.040 4.040 17 C -0.265 4.265 18 C -0.026 4.026 19 Cl -0.174 7.174 20 C 0.016 3.984 21 N -0.232 5.232 22 H 0.087 0.913 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.094 0.906 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.145 0.855 33 H 0.140 0.860 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.813 -8.431 -10.247 13.393 hybrid contribution 0.972 0.385 -0.350 1.102 sum 2.785 -8.046 -10.597 13.594 Atomic orbital electron populations 1.22171 0.95565 1.01802 1.02431 1.20976 0.93812 0.93554 0.87600 1.22166 1.01388 0.95726 1.02260 1.47343 1.47237 1.25662 1.08372 1.19243 0.95270 0.95184 0.76724 1.21385 1.09203 1.22454 1.01803 0.92618 1.24888 0.95603 0.97131 0.96463 1.69914 1.29333 1.43563 1.10999 0.86658 0.82067 0.81511 0.77748 1.20445 1.21350 1.20301 1.18550 0.87083 0.86724 0.88580 1.21393 1.08386 1.01265 0.97909 1.20947 0.92383 0.93591 0.97113 1.20154 1.07194 1.03343 0.95849 1.22846 0.80593 0.95270 1.03865 1.98724 1.29310 1.92713 1.96696 1.22324 0.91339 0.88809 0.95928 1.67537 1.11270 1.13214 1.31204 0.91278 0.92250 0.92883 0.90574 0.92815 0.93220 0.90068 0.95110 0.94045 0.92866 0.85531 0.85990 0.88664 0.88995 0.83680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.15 37.16 0.34 -2.08 16 2 C 0.15 2.44 3.17 -67.93 -0.22 2.22 16 3 C -0.16 -2.69 8.51 37.16 0.32 -2.38 16 4 N -0.58 -12.04 2.50 -167.61 -0.42 -12.46 16 5 C 0.26 6.39 4.57 -5.19 -0.02 6.36 16 6 C -0.51 -13.90 7.83 -34.44 -0.27 -14.17 16 7 H 0.06 1.56 7.61 -52.49 -0.40 1.16 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.90 -26.21 13.29 55.43 0.74 -25.47 16 10 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 C 0.43 8.61 7.32 -155.03 -1.13 7.48 16 15 C -0.26 -4.29 9.29 -39.23 -0.36 -4.65 16 16 C -0.01 -0.21 9.85 -39.32 -0.39 -0.59 16 17 C -0.26 -3.69 5.28 -104.46 -0.55 -4.24 16 18 C 0.04 0.41 6.80 36.01 0.24 0.65 16 19 Cl -0.20 -2.57 29.13 -51.86 -1.51 -4.08 16 20 C 0.18 3.06 10.85 -17.57 -0.19 2.87 16 21 N -0.52 -11.03 9.27 -12.44 -0.12 -11.15 16 22 H 0.07 1.17 6.62 -51.93 -0.34 0.83 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.08 1.12 5.36 -51.93 -0.28 0.84 16 26 H 0.05 0.98 8.14 -51.92 -0.42 0.55 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 1.62 6.92 -51.93 -0.36 1.26 16 29 H 0.03 0.80 6.36 -51.93 -0.33 0.47 16 30 H 0.04 1.16 7.57 -51.93 -0.39 0.77 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.13 1.79 5.87 -52.48 -0.31 1.48 16 33 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 34 H 0.09 0.88 8.09 -51.93 -0.42 0.46 16 35 H 0.09 0.80 8.09 -51.93 -0.42 0.38 16 36 H 0.15 2.18 8.06 -52.49 -0.42 1.75 16 LS Contribution 312.61 15.07 4.71 4.71 Total: -1.00 -30.26 312.61 -8.88 -39.13 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -4.92 Total: -0.58 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -2.33 Total: -6.93 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: 0.20 Total: -49.07 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 17 Polarization: -2.57 SS G_CDS: -1.51 Total: -4.08 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.26 -8.88 -39.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087718675.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.425 kcal (2) G-P(sol) polarization free energy of solvation -30.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds