Wall clock time and date at job start Mon Mar 30 2020 06:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47479 * 2 1 4 4 N 1.46503 * 109.47058 * 120.00719 * 2 1 3 5 5 C 1.46506 * 119.99395 * 301.23047 * 4 2 1 6 6 C 1.50702 * 109.47214 * 270.00351 * 5 4 2 7 7 H 1.07997 * 119.99506 * 0.02562 * 6 5 4 8 8 C 1.37873 * 119.99930 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00129 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00007 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47046 * 60.00385 * 10 8 6 12 12 H 1.48508 * 109.47106 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47582 * 300.00071 * 10 8 6 14 14 C 1.38997 * 120.00343 * 121.23537 * 4 2 1 15 15 C 1.39134 * 119.70407 * 349.02791 * 14 4 2 16 16 C 1.38301 * 119.09370 * 179.97438 * 15 14 4 17 17 C 1.38877 * 118.50810 * 359.97438 * 16 15 14 18 18 C 1.50705 * 120.33770 * 180.02562 * 17 16 15 19 19 Cl 1.80295 * 109.47067 * 90.00036 * 18 17 16 20 20 C 1.38027 * 119.32975 * 0.02562 * 17 16 15 21 21 N 1.31966 * 120.85281 * 359.97438 * 20 17 16 22 22 H 1.09005 * 109.47014 * 300.00115 * 1 2 3 23 23 H 1.08999 * 109.46812 * 59.99343 * 1 2 3 24 24 H 1.08996 * 109.47890 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47014 * 239.99885 * 2 1 3 26 26 H 1.09008 * 109.46957 * 180.02562 * 3 2 1 27 27 H 1.08994 * 109.46964 * 299.99951 * 3 2 1 28 28 H 1.08999 * 109.46925 * 60.00318 * 3 2 1 29 29 H 1.09001 * 109.46961 * 30.00309 * 5 4 2 30 30 H 1.09003 * 109.46522 * 150.00230 * 5 4 2 31 31 H 0.96996 * 120.00189 * 179.97438 * 9 8 6 32 32 H 1.08003 * 120.45464 * 0.24813 * 15 14 4 33 33 H 1.08007 * 120.74723 * 180.02562 * 16 15 14 34 34 H 1.08995 * 109.47143 * 210.00285 * 18 17 16 35 35 H 1.09002 * 109.47163 * 330.00024 * 18 17 16 36 36 H 1.07996 * 119.56980 * 179.97438 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6908 1.1961 5 6 1.6422 -0.2062 2.5266 6 6 2.6586 0.8005 3.0005 7 1 3.5003 1.0542 2.3732 8 6 2.5140 1.3974 4.2348 9 7 1.4892 1.0880 4.9989 10 14 3.7742 2.6446 4.8226 11 1 3.8193 3.7870 3.8748 12 1 3.3935 3.1350 6.1717 13 1 5.1119 2.0032 4.8889 14 6 2.8385 -1.8057 1.0687 15 6 3.0075 -2.3984 -0.1787 16 6 3.8268 -3.5069 -0.2912 17 6 4.4526 -3.9872 0.8518 18 6 5.3546 -5.1921 0.7764 19 17 7.0444 -4.6581 0.4445 20 6 4.2401 -3.3499 2.0575 21 7 3.4528 -2.2937 2.1352 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3635 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 3.1302 1.4423 -0.0005 27 1 1.6768 1.9562 -0.8899 28 1 1.6768 1.9562 0.8900 29 1 0.6602 0.2644 2.4776 30 1 1.6091 -1.0445 3.2225 31 1 1.3876 1.5076 5.8675 32 1 2.5091 -1.9956 -1.0482 33 1 3.9773 -3.9877 -1.2465 34 1 5.3230 -5.7296 1.7241 35 1 5.0171 -5.8491 -0.0252 36 1 4.7245 -3.7204 2.9488 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087718675.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:12 Heat of formation + Delta-G solvation = 9.876379 kcal Electronic energy + Delta-G solvation = -18392.447982 eV Core-core repulsion = 15515.622733 eV Total energy + Delta-G solvation = -2876.825249 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.18223 -38.53558 -36.75981 -34.89319 -34.17417 -32.77300 -31.82022 -29.13955 -28.01497 -26.71874 -25.30323 -23.57215 -22.91248 -20.66942 -18.62109 -18.43651 -17.50379 -16.53838 -16.20276 -15.79026 -15.62449 -15.21101 -14.99283 -14.46537 -14.23028 -14.16737 -13.87259 -13.83344 -13.33306 -13.23054 -12.98441 -12.78845 -12.75641 -12.43205 -12.29153 -12.09550 -11.64516 -11.51022 -11.31116 -11.22841 -10.65599 -10.54380 -10.49421 -9.97981 -8.40481 -7.97966 -6.22644 0.34566 0.60837 1.35382 1.38294 1.45282 1.74618 2.29084 2.45486 3.15584 3.18303 3.68260 3.86994 4.02186 4.05348 4.15941 4.28588 4.31483 4.36261 4.62551 4.70172 4.82510 4.84101 4.96147 5.00168 5.02248 5.13729 5.23926 5.25000 5.43765 5.46405 5.53894 5.73182 5.87887 6.18338 6.37036 6.70432 6.90258 7.42671 7.56996 8.93050 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.016874 B = 0.005944 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.980472 B = 4709.504390 C = 5724.309251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.140 3.860 3 C -0.150 4.150 4 N -0.596 5.596 5 C 0.280 3.720 6 C -0.508 4.508 7 H 0.043 0.957 8 C 0.009 3.991 9 N -0.931 5.931 10 Si 0.952 3.048 11 H -0.268 1.268 12 H -0.281 1.281 13 H -0.281 1.281 14 C 0.394 3.606 15 C -0.257 4.257 16 C -0.010 4.010 17 C -0.239 4.239 18 C 0.041 3.959 19 Cl -0.213 7.213 20 C 0.153 3.847 21 N -0.573 5.573 22 H 0.038 0.962 23 H 0.094 0.906 24 H 0.055 0.945 25 H 0.107 0.893 26 H 0.036 0.964 27 H 0.087 0.913 28 H 0.043 0.957 29 H 0.015 0.985 30 H 0.000 1.000 31 H 0.263 0.737 32 H 0.152 0.848 33 H 0.166 0.834 34 H 0.113 0.887 35 H 0.125 0.875 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.056 -10.331 -13.884 17.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.037 3.963 3 C -0.209 4.209 4 N -0.306 5.306 5 C 0.159 3.841 6 C -0.547 4.547 7 H 0.062 0.938 8 C -0.189 4.189 9 N -0.572 5.572 10 Si 0.778 3.222 11 H -0.193 1.193 12 H -0.206 1.206 13 H -0.207 1.207 14 C 0.159 3.841 15 C -0.282 4.282 16 C -0.035 4.035 17 C -0.245 4.245 18 C -0.022 4.022 19 Cl -0.187 7.187 20 C -0.007 4.007 21 N -0.290 5.290 22 H 0.057 0.943 23 H 0.113 0.887 24 H 0.075 0.925 25 H 0.125 0.875 26 H 0.055 0.945 27 H 0.106 0.894 28 H 0.062 0.938 29 H 0.032 0.968 30 H 0.018 0.982 31 H 0.072 0.928 32 H 0.169 0.831 33 H 0.183 0.817 34 H 0.131 0.869 35 H 0.144 0.856 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.800 -9.627 -12.927 16.359 hybrid contribution 0.736 0.594 0.414 1.033 sum 3.536 -9.033 -12.512 15.832 Atomic orbital electron populations 1.22105 0.94347 1.02083 1.02600 1.21259 0.94812 0.93074 0.87121 1.22094 1.00174 0.96342 1.02249 1.47187 1.48877 1.27006 1.07491 1.18537 0.93954 0.92784 0.78833 1.21563 1.08958 1.22520 1.01632 0.93849 1.25657 0.97395 0.99066 0.96775 1.70029 1.30987 1.44862 1.11353 0.85715 0.79352 0.79528 0.77655 1.19284 1.20596 1.20683 1.18929 0.87926 0.87239 0.90000 1.21636 1.08330 1.01413 0.96851 1.21461 0.90760 0.92566 0.98721 1.20477 1.06084 1.03210 0.94699 1.23052 0.78790 0.93916 1.06404 1.98732 1.30261 1.92932 1.96759 1.22621 0.91495 0.88717 0.97864 1.67391 1.13018 1.15390 1.33222 0.94325 0.88701 0.92542 0.87539 0.94518 0.89384 0.93788 0.96762 0.98178 0.92842 0.83084 0.81678 0.86885 0.85649 0.82872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.46 9.15 71.98 0.66 -3.80 16 2 C 0.14 4.60 3.17 44.99 0.14 4.75 16 3 C -0.15 -5.11 8.51 71.98 0.61 -4.49 16 4 N -0.60 -25.44 2.50 -684.19 -1.71 -27.16 16 5 C 0.28 14.91 4.57 85.63 0.39 15.30 16 6 C -0.51 -28.99 7.83 25.60 0.20 -28.79 16 7 H 0.04 2.53 7.61 -2.91 -0.02 2.51 16 8 C 0.01 0.52 5.46 84.65 0.46 0.98 16 9 N -0.93 -56.52 13.29 21.45 0.28 -56.24 16 10 Si 0.95 45.97 29.54 68.60 2.03 48.00 16 11 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 13 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 14 C 0.39 15.97 7.32 133.07 0.97 16.94 16 15 C -0.26 -7.74 9.29 22.50 0.21 -7.53 16 16 C -0.01 -0.23 9.85 22.44 0.22 -0.01 16 17 C -0.24 -6.17 5.28 -19.76 -0.10 -6.27 16 18 C 0.04 0.73 6.80 71.24 0.48 1.22 16 19 Cl -0.21 -4.86 29.13 -2.72 -0.08 -4.94 16 20 C 0.15 5.21 10.85 84.62 0.92 6.13 16 21 N -0.57 -25.22 9.27 -193.28 -1.79 -27.01 16 22 H 0.04 1.34 6.62 -2.38 -0.02 1.33 16 23 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.11 2.82 5.36 -2.38 -0.01 2.81 16 26 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 27 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.04 1.80 6.92 -2.39 -0.02 1.78 16 29 H 0.01 0.80 6.36 -2.39 -0.02 0.79 16 30 H 0.00 0.01 7.57 -2.39 -0.02 -0.01 16 31 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 32 H 0.15 3.68 5.87 -2.91 -0.02 3.66 16 33 H 0.17 2.65 8.06 -2.91 -0.02 2.63 16 34 H 0.11 1.68 8.09 -2.39 -0.02 1.66 16 35 H 0.13 1.51 8.09 -2.39 -0.02 1.49 16 36 H 0.15 4.65 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -70.16 312.61 4.97 -65.20 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: 1.07 Total: 7.72 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 5.17 Total: -5.58 kcal Atomic # 7 Polarization: -107.18 SS G_CDS: -3.22 Total: -110.40 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Atomic # 17 Polarization: -4.86 SS G_CDS: -0.08 Total: -4.94 kcal Total: -70.16 4.97 -65.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087718675.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.072 kcal (2) G-P(sol) polarization free energy of solvation -70.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds