Wall clock time and date at job start Mon Mar 30 2020 07:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99716 * 2 1 4 4 H 1.48497 * 109.47232 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47003 * 120.00037 * 3 2 1 6 6 H 1.48496 * 109.47066 * 239.99857 * 3 2 1 7 7 C 1.37873 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99937 * 185.68733 * 7 2 1 9 9 C 1.50696 * 120.00172 * 5.68272 * 7 2 1 10 10 C 1.53007 * 115.54581 * 39.67934 * 9 7 2 11 11 N 1.46495 * 109.47135 * 55.91523 * 10 9 7 12 12 C 1.36882 * 126.50048 * 6.59473 * 11 10 9 13 13 C 1.34863 * 107.03246 * 179.97438 * 12 11 10 14 14 N 1.33792 * 108.37751 * 0.02562 * 13 12 11 15 15 C 1.31444 * 109.25588 * 359.76061 * 14 13 12 16 16 C 1.47913 * 125.83288 * 180.23422 * 15 14 13 17 17 C 1.39539 * 120.14044 * 162.20435 * 16 15 14 18 18 C 1.37973 * 119.85562 * 179.72209 * 17 16 15 19 19 C 1.38346 * 120.14357 * 0.58102 * 18 17 16 20 20 C 1.38352 * 120.28263 * 359.69327 * 19 18 17 21 21 C 1.37972 * 120.14343 * 0.02562 * 20 19 18 22 22 C 1.52999 * 117.50276 * 253.97208 * 9 7 2 23 23 C 1.52998 * 60.00183 * 252.51046 * 22 9 7 24 24 H 0.96995 * 120.00477 * 355.00240 * 1 2 3 25 25 H 1.09006 * 109.46735 * 175.91287 * 10 9 7 26 26 H 1.08997 * 109.46885 * 295.90739 * 10 9 7 27 27 H 1.08008 * 126.48092 * 359.94397 * 12 11 10 28 28 H 1.07996 * 125.81047 * 179.97438 * 13 12 11 29 29 H 1.08001 * 120.06911 * 0.02562 * 17 16 15 30 30 H 1.08002 * 119.92631 * 180.32248 * 18 17 16 31 31 H 1.07995 * 119.86029 * 179.71919 * 19 18 17 32 32 H 1.07996 * 119.93041 * 180.02562 * 20 19 18 33 33 H 1.07998 * 120.07565 * 180.02562 * 21 20 19 34 34 H 1.09005 * 117.49720 * 0.02562 * 22 9 7 35 35 H 1.09003 * 117.49995 * 145.02004 * 22 9 7 36 36 H 1.08999 * 117.49897 * 252.51248 * 23 22 9 37 37 H 1.08995 * 117.50003 * 107.48717 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0805 -1.1963 0.0922 9 6 1.2567 -2.4958 -0.1303 10 6 0.0869 -2.4893 -1.1166 11 7 0.5630 -2.0666 -2.4360 12 6 1.8639 -1.8454 -2.7998 13 6 1.8539 -1.4735 -4.0961 14 7 0.5857 -1.4638 -4.5223 15 6 -0.2058 -1.8233 -3.5363 16 6 -1.6785 -1.9411 -3.6071 17 6 -2.3702 -2.6714 -2.6399 18 6 -3.7445 -2.7726 -2.7083 19 6 -4.4356 -2.1622 -3.7397 20 6 -3.7552 -1.4415 -4.7049 21 6 -2.3815 -1.3278 -4.6447 22 6 1.1179 -3.3592 1.1252 23 6 2.0626 -3.7897 0.0013 24 1 -0.4850 0.8368 0.0732 25 1 -0.3348 -3.4920 -1.1866 26 1 -0.6788 -1.7967 -0.7674 27 1 2.7339 -1.9488 -2.1680 28 1 2.7217 -1.2248 -4.6889 29 1 -1.8314 -3.1521 -1.8368 30 1 -4.2815 -3.3332 -1.9574 31 1 -5.5109 -2.2482 -3.7913 32 1 -4.3004 -0.9669 -5.5073 33 1 -1.8514 -0.7646 -5.3985 34 1 1.5672 -2.9853 2.0452 35 1 0.1931 -3.9227 1.2488 36 1 1.7592 -4.6364 -0.6145 37 1 3.1337 -3.6993 0.1818 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259630.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:38 Heat of formation + Delta-G solvation = 114.308843 kcal Electronic energy + Delta-G solvation = -20344.334758 eV Core-core repulsion = 17474.470890 eV Total energy + Delta-G solvation = -2869.863868 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.13757 -38.45257 -36.98337 -32.61892 -32.26753 -31.51344 -30.50105 -27.64157 -26.31246 -25.60272 -22.60119 -22.33810 -21.44946 -20.37418 -19.36980 -18.99455 -17.10865 -16.14310 -15.93897 -15.11439 -14.60760 -14.51288 -14.34200 -13.84354 -13.30949 -13.07991 -12.91251 -12.79438 -12.36878 -12.20593 -11.96641 -11.72048 -11.08796 -11.00959 -10.89714 -10.73793 -10.62938 -10.42850 -9.92085 -9.27084 -9.10572 -9.00595 -8.98372 -8.64948 -8.59902 -8.31413 -7.13397 -6.24151 -4.31216 1.42519 1.72874 3.13545 3.19657 3.26777 3.29127 3.75452 3.86684 4.22588 4.40355 4.80387 4.92077 5.21945 5.22599 5.28464 5.41098 5.61280 5.65467 5.80353 5.96192 5.96975 6.14733 6.17503 6.20189 6.34793 6.37181 6.45733 6.59165 6.64772 6.71416 6.77737 6.79873 6.92641 7.09098 7.15118 7.23930 7.41824 7.64026 7.69909 8.06508 8.19186 8.63501 8.90085 9.31647 10.76975 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.017367 B = 0.007301 C = 0.006903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.890426 B = 3834.000784 C = 4055.466109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.078 3.922 3 Si 0.895 3.105 4 H -0.286 1.286 5 H -0.276 1.276 6 H -0.271 1.271 7 C -0.495 4.495 8 H 0.065 0.935 9 C 0.034 3.966 10 C 0.133 3.867 11 N -0.401 5.401 12 C 0.016 3.984 13 C -0.073 4.073 14 N -0.485 5.485 15 C 0.200 3.800 16 C 0.018 3.982 17 C -0.120 4.120 18 C -0.117 4.117 19 C -0.128 4.128 20 C -0.123 4.123 21 C -0.091 4.091 22 C -0.189 4.189 23 C -0.208 4.208 24 H 0.267 0.733 25 H 0.044 0.956 26 H 0.136 0.864 27 H 0.178 0.822 28 H 0.159 0.841 29 H 0.130 0.870 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.130 0.870 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.839 -4.556 -4.005 7.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.126 4.126 3 Si 0.722 3.278 4 H -0.211 1.211 5 H -0.201 1.201 6 H -0.196 1.196 7 C -0.532 4.532 8 H 0.083 0.917 9 C 0.034 3.966 10 C 0.012 3.988 11 N -0.078 5.078 12 C -0.122 4.122 13 C -0.223 4.223 14 N -0.205 5.205 15 C -0.057 4.057 16 C 0.016 3.984 17 C -0.140 4.140 18 C -0.135 4.135 19 C -0.147 4.147 20 C -0.141 4.141 21 C -0.110 4.110 22 C -0.227 4.227 23 C -0.245 4.245 24 H 0.077 0.923 25 H 0.062 0.938 26 H 0.153 0.847 27 H 0.195 0.805 28 H 0.176 0.824 29 H 0.148 0.852 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.147 0.853 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.311 -4.250 -4.696 8.266 hybrid contribution 0.847 0.723 1.108 1.571 sum -4.464 -3.527 -3.588 6.726 Atomic orbital electron populations 1.69619 1.06057 1.27530 1.48310 1.24903 0.94851 0.99287 0.93560 0.86566 0.79734 0.82564 0.78891 1.21135 1.20146 1.19636 1.20371 0.92982 0.88267 1.51552 0.91724 1.19081 0.93953 0.90356 0.93241 1.21996 0.99914 0.97948 0.78909 1.45358 1.06216 1.46162 1.10062 1.22908 0.88223 1.04881 0.96226 1.22039 0.94635 1.11381 0.94242 1.70146 1.01830 1.19494 1.29028 1.20967 0.91881 1.08671 0.84191 1.17620 0.87537 0.97560 0.95711 1.21604 0.94696 0.98919 0.98731 1.20967 0.93839 1.00291 0.98447 1.21119 0.99493 0.98749 0.95331 1.21008 0.94037 0.99845 0.99225 1.21141 0.93655 0.98585 0.97647 1.22938 0.99392 1.05797 0.94620 1.22977 0.97401 1.00061 1.04097 0.92304 0.93771 0.84675 0.80471 0.82363 0.85213 0.86108 0.86465 0.86156 0.85253 0.89748 0.91438 0.91270 0.90100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.96 10.75 55.43 0.60 -22.37 16 2 C 0.08 1.99 5.31 -17.82 -0.09 1.89 16 3 Si 0.90 20.54 29.55 -169.99 -5.02 15.52 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.49 -12.13 6.50 -34.44 -0.22 -12.35 16 8 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 9 C 0.03 0.76 1.21 -155.66 -0.19 0.57 16 10 C 0.13 2.89 3.85 -4.04 -0.02 2.87 16 11 N -0.40 -8.87 3.14 -114.28 -0.36 -9.23 16 12 C 0.02 0.35 9.74 -16.49 -0.16 0.19 16 13 C -0.07 -1.53 11.84 -17.89 -0.21 -1.74 16 14 N -0.49 -10.77 11.00 -11.21 -0.12 -10.89 16 15 C 0.20 4.39 7.60 -154.67 -1.18 3.21 16 16 C 0.02 0.34 5.86 -104.97 -0.62 -0.27 16 17 C -0.12 -2.11 8.99 -39.19 -0.35 -2.46 16 18 C -0.12 -1.72 10.03 -39.64 -0.40 -2.12 16 19 C -0.13 -1.73 10.04 -39.50 -0.40 -2.12 16 20 C -0.12 -1.75 10.03 -39.64 -0.40 -2.15 16 21 C -0.09 -1.56 9.69 -39.19 -0.38 -1.94 16 22 C -0.19 -3.83 9.96 -26.73 -0.27 -4.09 16 23 C -0.21 -4.05 9.93 -26.73 -0.27 -4.31 16 24 H 0.27 6.90 8.32 -40.82 -0.34 6.56 16 25 H 0.04 0.87 6.56 -51.93 -0.34 0.53 16 26 H 0.14 3.24 5.45 -51.93 -0.28 2.96 16 27 H 0.18 3.74 6.50 -52.48 -0.34 3.40 16 28 H 0.16 2.79 8.06 -52.49 -0.42 2.37 16 29 H 0.13 2.29 4.43 -52.49 -0.23 2.05 16 30 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 33 H 0.13 2.21 7.93 -52.49 -0.42 1.80 16 34 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 LS Contribution 308.14 15.07 4.64 4.64 Total: -1.00 -27.45 308.14 -9.95 -37.39 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -4.54 Total: 9.74 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: -5.14 Total: -24.81 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: 0.11 Total: -42.49 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.45 -9.95 -37.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259630.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.702 kcal (2) G-P(sol) polarization free energy of solvation -27.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds