Wall clock time and date at job start Mon Mar 30 2020 07:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99716 * 2 1 4 4 H 1.48497 * 109.47232 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47003 * 120.00037 * 3 2 1 6 6 H 1.48496 * 109.47066 * 239.99857 * 3 2 1 7 7 C 1.37873 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99937 * 185.68733 * 7 2 1 9 9 C 1.50696 * 120.00172 * 5.68272 * 7 2 1 10 10 C 1.53007 * 115.54581 * 39.67934 * 9 7 2 11 11 N 1.46495 * 109.47135 * 55.91523 * 10 9 7 12 12 C 1.36882 * 126.50048 * 6.59473 * 11 10 9 13 13 C 1.34863 * 107.03246 * 179.97438 * 12 11 10 14 14 N 1.33792 * 108.37751 * 0.02562 * 13 12 11 15 15 C 1.31444 * 109.25588 * 359.76061 * 14 13 12 16 16 C 1.47913 * 125.83288 * 180.23422 * 15 14 13 17 17 C 1.39539 * 120.14044 * 162.20435 * 16 15 14 18 18 C 1.37973 * 119.85562 * 179.72209 * 17 16 15 19 19 C 1.38346 * 120.14357 * 0.58102 * 18 17 16 20 20 C 1.38352 * 120.28263 * 359.69327 * 19 18 17 21 21 C 1.37972 * 120.14343 * 0.02562 * 20 19 18 22 22 C 1.52999 * 117.50276 * 253.97208 * 9 7 2 23 23 C 1.52998 * 60.00183 * 252.51046 * 22 9 7 24 24 H 0.96995 * 120.00477 * 355.00240 * 1 2 3 25 25 H 1.09006 * 109.46735 * 175.91287 * 10 9 7 26 26 H 1.08997 * 109.46885 * 295.90739 * 10 9 7 27 27 H 1.08008 * 126.48092 * 359.94397 * 12 11 10 28 28 H 1.07996 * 125.81047 * 179.97438 * 13 12 11 29 29 H 1.08001 * 120.06911 * 0.02562 * 17 16 15 30 30 H 1.08002 * 119.92631 * 180.32248 * 18 17 16 31 31 H 1.07995 * 119.86029 * 179.71919 * 19 18 17 32 32 H 1.07996 * 119.93041 * 180.02562 * 20 19 18 33 33 H 1.07998 * 120.07565 * 180.02562 * 21 20 19 34 34 H 1.09005 * 117.49720 * 0.02562 * 22 9 7 35 35 H 1.09003 * 117.49995 * 145.02004 * 22 9 7 36 36 H 1.08999 * 117.49897 * 252.51248 * 23 22 9 37 37 H 1.08995 * 117.50003 * 107.48717 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0805 -1.1963 0.0922 9 6 1.2567 -2.4958 -0.1303 10 6 0.0869 -2.4893 -1.1166 11 7 0.5630 -2.0666 -2.4360 12 6 1.8639 -1.8454 -2.7998 13 6 1.8539 -1.4735 -4.0961 14 7 0.5857 -1.4638 -4.5223 15 6 -0.2058 -1.8233 -3.5363 16 6 -1.6785 -1.9411 -3.6071 17 6 -2.3702 -2.6714 -2.6399 18 6 -3.7445 -2.7726 -2.7083 19 6 -4.4356 -2.1622 -3.7397 20 6 -3.7552 -1.4415 -4.7049 21 6 -2.3815 -1.3278 -4.6447 22 6 1.1179 -3.3592 1.1252 23 6 2.0626 -3.7897 0.0013 24 1 -0.4850 0.8368 0.0732 25 1 -0.3348 -3.4920 -1.1866 26 1 -0.6788 -1.7967 -0.7674 27 1 2.7339 -1.9488 -2.1680 28 1 2.7217 -1.2248 -4.6889 29 1 -1.8314 -3.1521 -1.8368 30 1 -4.2815 -3.3332 -1.9574 31 1 -5.5109 -2.2482 -3.7913 32 1 -4.3004 -0.9669 -5.5073 33 1 -1.8514 -0.7646 -5.3985 34 1 1.5672 -2.9853 2.0452 35 1 0.1931 -3.9227 1.2488 36 1 1.7592 -4.6364 -0.6145 37 1 3.1337 -3.6993 0.1818 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259630.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:37 Heat of formation + Delta-G solvation = 102.523807 kcal Electronic energy + Delta-G solvation = -20344.845795 eV Core-core repulsion = 17474.470890 eV Total energy + Delta-G solvation = -2870.374905 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.74773 -39.67582 -38.66212 -34.32467 -34.05851 -32.84907 -31.72618 -29.15657 -28.02844 -27.41684 -23.93131 -23.64932 -23.02920 -21.96934 -20.85406 -20.71896 -18.77736 -17.67602 -17.26681 -16.90066 -16.22042 -16.01775 -15.73562 -15.37909 -14.91491 -14.44480 -14.41405 -14.16518 -13.78996 -13.74597 -13.61542 -13.38464 -12.91791 -12.76320 -12.43846 -12.17717 -12.12138 -11.93960 -11.60967 -11.05980 -10.82012 -10.69595 -10.38740 -10.29789 -10.04753 -9.82390 -8.67508 -8.14869 -6.24253 0.13404 0.52461 1.34419 1.40354 1.42544 1.55975 2.17042 2.32459 2.34595 2.99179 3.06102 3.45923 3.58153 3.95610 4.02503 4.08207 4.21730 4.28026 4.38883 4.52587 4.56065 4.59883 4.70373 4.73359 4.89857 4.95084 4.99644 5.00677 5.17019 5.18718 5.38134 5.50193 5.50844 5.60618 5.62477 5.76133 5.79304 6.04114 6.10552 6.24750 6.54135 6.72390 7.26702 7.38455 8.82932 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.017367 B = 0.007301 C = 0.006903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.890426 B = 3834.000784 C = 4055.466109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.041 3.959 3 Si 0.935 3.065 4 H -0.293 1.293 5 H -0.268 1.268 6 H -0.276 1.276 7 C -0.494 4.494 8 H 0.059 0.941 9 C 0.003 3.997 10 C 0.146 3.854 11 N -0.408 5.408 12 C -0.003 4.003 13 C -0.078 4.078 14 N -0.508 5.508 15 C 0.193 3.807 16 C -0.023 4.023 17 C -0.135 4.135 18 C -0.118 4.118 19 C -0.115 4.115 20 C -0.118 4.118 21 C -0.105 4.105 22 C -0.183 4.183 23 C -0.186 4.186 24 H 0.259 0.741 25 H 0.060 0.940 26 H 0.112 0.888 27 H 0.178 0.822 28 H 0.185 0.815 29 H 0.121 0.879 30 H 0.150 0.850 31 H 0.159 0.841 32 H 0.154 0.846 33 H 0.120 0.880 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.337 -5.399 -4.248 9.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.161 4.161 3 Si 0.762 3.238 4 H -0.219 1.219 5 H -0.193 1.193 6 H -0.201 1.201 7 C -0.531 4.531 8 H 0.077 0.923 9 C 0.003 3.997 10 C 0.024 3.976 11 N -0.085 5.085 12 C -0.141 4.141 13 C -0.227 4.227 14 N -0.228 5.228 15 C -0.065 4.065 16 C -0.024 4.024 17 C -0.154 4.154 18 C -0.135 4.135 19 C -0.133 4.133 20 C -0.135 4.135 21 C -0.125 4.125 22 C -0.221 4.221 23 C -0.223 4.223 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.129 0.871 27 H 0.195 0.805 28 H 0.202 0.798 29 H 0.139 0.861 30 H 0.168 0.832 31 H 0.177 0.823 32 H 0.172 0.828 33 H 0.138 0.862 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.782 -5.101 -4.928 9.814 hybrid contribution 1.233 0.944 1.157 1.937 sum -5.549 -4.157 -3.771 7.893 Atomic orbital electron populations 1.69756 1.06688 1.27161 1.49912 1.25383 0.95346 1.01226 0.94125 0.85940 0.78745 0.80329 0.78791 1.21919 1.19328 1.20102 1.20561 0.92839 0.89436 1.50273 0.92291 1.19144 0.95164 0.90580 0.94860 1.21781 0.99083 0.98021 0.78683 1.45447 1.06406 1.46490 1.10204 1.23002 0.88298 1.06128 0.96674 1.22522 0.95180 1.10612 0.94402 1.70168 1.02385 1.20683 1.29564 1.21615 0.93232 1.07652 0.83970 1.17862 0.86586 1.00189 0.97809 1.21659 0.96164 0.99302 0.98281 1.21357 0.92677 1.00072 0.99423 1.21623 1.01500 0.96463 0.93713 1.21404 0.92747 0.99219 1.00167 1.21238 0.95208 0.98938 0.97145 1.22941 1.00371 1.04986 0.93845 1.22968 0.97426 0.98781 1.03145 0.93126 0.92181 0.87078 0.80490 0.79790 0.86115 0.83209 0.82309 0.82802 0.86188 0.90348 0.89711 0.89697 0.89649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.76 10.75 21.45 0.23 -47.53 16 2 C 0.04 2.08 5.31 84.65 0.45 2.53 16 3 Si 0.93 42.55 29.55 68.60 2.03 44.58 16 4 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 5 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 7 C -0.49 -24.29 6.50 25.60 0.17 -24.12 16 8 H 0.06 2.89 7.82 -2.91 -0.02 2.87 16 9 C 0.00 0.14 1.21 -52.93 -0.06 0.08 16 10 C 0.15 6.34 3.85 86.38 0.33 6.67 16 11 N -0.41 -18.33 3.14 -515.49 -1.62 -19.95 16 12 C 0.00 -0.13 9.74 83.13 0.81 0.68 16 13 C -0.08 -3.29 11.84 83.62 0.99 -2.30 16 14 N -0.51 -22.96 11.00 -189.38 -2.08 -25.04 16 15 C 0.19 8.65 7.60 136.56 1.04 9.68 16 16 C -0.02 -0.89 5.86 -20.09 -0.12 -1.01 16 17 C -0.13 -4.65 8.99 22.52 0.20 -4.45 16 18 C -0.12 -3.13 10.03 22.23 0.22 -2.91 16 19 C -0.11 -2.64 10.04 22.32 0.22 -2.41 16 20 C -0.12 -3.01 10.03 22.23 0.22 -2.79 16 21 C -0.11 -3.59 9.69 22.52 0.22 -3.37 16 22 C -0.18 -7.17 9.96 30.59 0.30 -6.86 16 23 C -0.19 -6.95 9.93 30.59 0.30 -6.65 16 24 H 0.26 13.73 8.32 -92.71 -0.77 12.95 16 25 H 0.06 2.36 6.56 -2.38 -0.02 2.35 16 26 H 0.11 5.44 5.45 -2.39 -0.01 5.42 16 27 H 0.18 7.58 6.50 -2.91 -0.02 7.56 16 28 H 0.19 6.44 8.06 -2.91 -0.02 6.42 16 29 H 0.12 4.27 4.43 -2.91 -0.01 4.25 16 30 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 31 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 32 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 33 H 0.12 4.18 7.93 -2.91 -0.02 4.15 16 34 H 0.08 3.15 8.14 -2.38 -0.02 3.13 16 35 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 36 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 37 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -59.64 308.14 4.93 -54.71 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: 1.07 Total: 30.45 kcal Atomic # 6 Polarization: -42.53 SS G_CDS: 5.30 Total: -37.23 kcal Atomic # 7 Polarization: -89.04 SS G_CDS: -3.47 Total: -92.52 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -59.64 4.93 -54.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259630.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.238 kcal (2) G-P(sol) polarization free energy of solvation -59.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds