Wall clock time and date at job start Mon Mar 30 2020 07:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30909 * 1 3 3 Si 1.86801 * 119.99717 * 2 1 4 4 H 1.48498 * 109.46643 * 274.51150 * 3 2 1 5 5 H 1.48493 * 109.47078 * 34.50955 * 3 2 1 6 6 H 1.48496 * 109.46808 * 154.51370 * 3 2 1 7 7 C 1.39868 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99647 * 198.00857 * 7 2 1 9 9 C 1.41138 * 119.99920 * 18.00238 * 7 2 1 10 10 C 1.40887 * 120.15717 * 25.18694 * 9 7 2 11 11 C 1.36339 * 119.83668 * 180.24827 * 10 9 7 12 12 C 1.39570 * 120.16012 * 359.50290 * 11 10 9 13 13 N 1.38855 * 119.84083 * 180.25235 * 12 11 10 14 14 C 1.46498 * 119.99831 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.46989 * 180.02562 * 14 13 12 16 16 C 1.38125 * 120.03513 * 259.72075 * 15 14 13 17 17 C 1.38273 * 120.07177 * 179.74705 * 16 15 14 18 18 C 1.38304 * 120.14997 * 0.55381 * 17 16 15 19 19 C 1.38086 * 120.07716 * 359.70500 * 18 17 16 20 20 C 1.38891 * 120.03973 * 80.00571 * 15 14 13 21 21 N 1.39670 * 120.07413 * 359.94688 * 20 15 14 22 22 C 1.39569 * 120.31581 * 0.27504 * 12 11 10 23 23 C 1.36342 * 120.15886 * 359.97438 * 22 12 11 24 24 H 0.96998 * 120.00024 * 359.97438 * 1 2 3 25 25 H 1.08003 * 120.07788 * 0.02562 * 10 9 7 26 26 H 1.08000 * 119.92098 * 179.77740 * 11 10 9 27 27 H 0.97002 * 120.00150 * 0.02562 * 13 12 11 28 28 H 1.09000 * 109.47462 * 299.99974 * 14 13 12 29 29 H 1.08999 * 109.47381 * 60.00349 * 14 13 12 30 30 H 1.07989 * 119.96629 * 0.02902 * 16 15 14 31 31 H 1.07997 * 119.92120 * 180.27863 * 17 16 15 32 32 H 1.08001 * 119.96329 * 179.72236 * 18 17 16 33 33 H 1.07999 * 120.04216 * 179.97438 * 19 18 17 34 34 H 0.97004 * 120.00215 * 0.02562 * 21 20 15 35 35 H 0.97007 * 120.00361 * 180.02562 * 21 20 15 36 36 H 1.07997 * 119.91981 * 180.02562 * 22 12 11 37 37 H 1.08006 * 120.07963 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.3950 2.1014 -1.3958 5 1 1.4914 2.6232 0.7932 6 1 3.5850 1.4146 0.6024 7 6 2.0084 -1.2113 -0.0005 8 1 3.0487 -1.2342 0.2886 9 6 1.3546 -2.4035 -0.3788 10 6 0.2341 -2.3563 -1.2316 11 6 -0.3956 -3.5115 -1.5888 12 6 0.0734 -4.7397 -1.1202 13 7 -0.5699 -5.9126 -1.4924 14 6 -0.0801 -7.2036 -1.0029 15 6 -0.9461 -8.3093 -1.5494 16 6 -1.9291 -8.8723 -0.7591 17 6 -2.7275 -9.8833 -1.2615 18 6 -2.5374 -10.3420 -2.5524 19 6 -1.5530 -9.7872 -3.3460 20 6 -0.7527 -8.7674 -2.8463 21 7 0.2436 -8.2036 -3.6465 22 6 1.1856 -4.7944 -0.2788 23 6 1.8222 -3.6467 0.0907 24 1 -0.4850 0.8400 0.0004 25 1 -0.1272 -1.4069 -1.5986 26 1 -1.2568 -3.4766 -2.2396 27 1 -1.3430 -5.8772 -2.0771 28 1 0.9482 -7.3511 -1.3330 29 1 -0.1175 -7.2171 0.0864 30 1 -2.0772 -8.5195 0.2507 31 1 -3.4983 -10.3187 -0.6430 32 1 -3.1599 -11.1348 -2.9402 33 1 -1.4048 -10.1461 -4.3538 34 1 0.8017 -7.4915 -3.2965 35 1 0.3775 -8.5240 -4.5522 36 1 1.5434 -5.7483 0.0798 37 1 2.6830 -3.6906 0.7415 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090961823.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:54 Heat of formation + Delta-G solvation = 27.906667 kcal Electronic energy + Delta-G solvation = -18872.557350 eV Core-core repulsion = 15998.946803 eV Total energy + Delta-G solvation = -2873.610547 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.60857 -39.56304 -36.72503 -35.35493 -34.76403 -32.49314 -31.33984 -30.27782 -29.41579 -27.15042 -25.55266 -23.36096 -22.91471 -22.15538 -21.53142 -19.11676 -18.11247 -17.80315 -17.67676 -17.13209 -16.43750 -15.91093 -15.58718 -15.13745 -14.76621 -14.59689 -14.42402 -14.34992 -14.01347 -13.89349 -13.57018 -13.37783 -13.08562 -12.76054 -12.58609 -12.30840 -12.10175 -11.76288 -11.55055 -11.51353 -11.19443 -11.06998 -10.30497 -9.73289 -9.39704 -8.55106 -8.38934 -8.15345 -6.00421 0.47310 0.76849 1.10490 1.19321 1.40394 1.53361 1.59147 2.27791 2.78901 2.85203 3.05804 3.26249 3.84969 3.88123 4.00676 4.29382 4.45093 4.45997 4.48933 4.64524 4.66723 4.82145 5.00430 5.02935 5.17787 5.19051 5.31564 5.41733 5.44761 5.68437 5.74221 5.76222 5.78497 5.92869 6.06014 6.19331 6.41864 6.60922 6.68603 6.88516 6.96308 7.09165 7.12205 7.30177 8.48908 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.047558 B = 0.003367 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.611387 B = 8315.239711 C = 8382.342149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.032 3.968 3 Si 0.977 3.023 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.261 1.261 7 C -0.507 4.507 8 H 0.067 0.933 9 C 0.036 3.964 10 C -0.140 4.140 11 C -0.174 4.174 12 C 0.116 3.884 13 N -0.744 5.744 14 C 0.189 3.811 15 C -0.196 4.196 16 C -0.066 4.066 17 C -0.192 4.192 18 C -0.069 4.069 19 C -0.212 4.212 20 C 0.225 3.775 21 N -0.870 5.870 22 C -0.166 4.166 23 C -0.196 4.196 24 H 0.282 0.718 25 H 0.098 0.902 26 H 0.103 0.897 27 H 0.391 0.609 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.122 0.878 31 H 0.135 0.865 32 H 0.145 0.855 33 H 0.137 0.863 34 H 0.399 0.601 35 H 0.406 0.594 36 H 0.114 0.886 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.762 -16.965 -6.204 18.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.180 4.180 3 Si 0.798 3.202 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.185 1.185 7 C -0.538 4.538 8 H 0.085 0.915 9 C 0.033 3.967 10 C -0.160 4.160 11 C -0.196 4.196 12 C 0.016 3.984 13 N -0.378 5.378 14 C 0.065 3.935 15 C -0.202 4.202 16 C -0.085 4.085 17 C -0.212 4.212 18 C -0.087 4.087 19 C -0.234 4.234 20 C 0.118 3.882 21 N -0.408 5.408 22 C -0.188 4.188 23 C -0.216 4.216 24 H 0.092 0.908 25 H 0.116 0.884 26 H 0.121 0.879 27 H 0.225 0.775 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.140 0.860 31 H 0.153 0.847 32 H 0.163 0.837 33 H 0.155 0.845 34 H 0.229 0.771 35 H 0.235 0.765 36 H 0.132 0.868 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.841 -16.959 -6.075 18.419 hybrid contribution 0.316 1.221 -0.181 1.274 sum -3.525 -15.738 -6.256 17.298 Atomic orbital electron populations 1.69925 1.08749 1.29759 1.38617 1.26612 0.95447 1.04094 0.91861 0.85278 0.79106 0.76652 0.79117 1.18972 1.19587 1.18471 1.19596 0.98030 0.92800 1.43364 0.91461 1.17799 0.93596 0.93012 0.92247 1.20825 0.98891 0.96569 0.99697 1.20206 1.02047 0.91870 1.05509 1.17435 0.95029 0.86100 0.99822 1.44039 1.35025 1.01739 1.57020 1.19710 0.95554 0.80845 0.97421 1.19400 1.03305 1.02657 0.94815 1.21039 0.93160 0.95058 0.99253 1.21137 1.02589 1.00287 0.97191 1.21232 0.95936 0.98169 0.93396 1.20849 1.00244 1.00436 1.01909 1.17828 0.88724 0.91789 0.89823 1.42644 1.37962 1.43351 1.16885 1.20094 0.98127 0.97452 1.03163 1.20758 1.03135 0.92921 1.04813 0.90787 0.88427 0.87859 0.77542 0.93135 0.93220 0.85957 0.84709 0.83745 0.84511 0.77128 0.76466 0.86804 0.88679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.46 11.01 21.82 0.24 -46.22 16 2 C 0.03 1.68 5.12 85.22 0.44 2.12 16 3 Si 0.98 40.46 29.60 68.60 2.03 42.49 16 4 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 5 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 6 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 7 C -0.51 -28.71 9.03 23.38 0.21 -28.50 16 8 H 0.07 3.71 7.91 -2.91 -0.02 3.68 16 9 C 0.04 2.03 5.57 -21.27 -0.12 1.92 16 10 C -0.14 -7.58 8.63 22.48 0.19 -7.39 16 11 C -0.17 -8.19 9.82 22.15 0.22 -7.97 16 12 C 0.12 4.89 6.67 38.67 0.26 5.15 16 13 N -0.74 -24.68 5.69 -342.71 -1.95 -26.63 16 14 C 0.19 5.35 4.31 85.63 0.37 5.72 16 15 C -0.20 -4.86 5.27 -19.73 -0.10 -4.97 16 16 C -0.07 -1.51 9.66 22.25 0.22 -1.30 16 17 C -0.19 -3.70 10.04 22.29 0.22 -3.48 16 18 C -0.07 -1.19 10.04 22.25 0.22 -0.97 16 19 C -0.21 -3.97 9.90 22.40 0.22 -3.75 16 20 C 0.23 4.99 6.74 38.22 0.26 5.24 16 21 N -0.87 -16.86 9.00 -51.37 -0.46 -17.33 16 22 C -0.17 -7.32 9.23 22.15 0.20 -7.11 16 23 C -0.20 -9.89 9.74 22.48 0.22 -9.67 16 24 H 0.28 14.15 8.30 -92.71 -0.77 13.38 16 25 H 0.10 5.59 6.21 -2.91 -0.02 5.57 16 26 H 0.10 4.39 8.06 -2.91 -0.02 4.36 16 27 H 0.39 12.41 8.46 -92.71 -0.78 11.63 16 28 H 0.05 1.41 6.88 -2.39 -0.02 1.40 16 29 H 0.05 1.47 7.79 -2.39 -0.02 1.45 16 30 H 0.12 2.67 8.03 -2.92 -0.02 2.64 16 31 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 32 H 0.14 1.69 8.06 -2.91 -0.02 1.66 16 33 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 34 H 0.40 8.74 7.06 -92.71 -0.65 8.09 16 35 H 0.41 5.86 8.84 -92.70 -0.82 5.04 16 36 H 0.11 4.35 6.68 -2.91 -0.02 4.33 16 37 H 0.10 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -62.38 312.82 1.74 -60.64 By element: Atomic # 1 Polarization: 43.14 SS G_CDS: -1.14 Total: 41.99 kcal Atomic # 6 Polarization: -57.98 SS G_CDS: 3.03 Total: -54.96 kcal Atomic # 7 Polarization: -88.00 SS G_CDS: -2.17 Total: -90.17 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.49 kcal Total: -62.38 1.74 -60.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090961823.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.549 kcal (2) G-P(sol) polarization free energy of solvation -62.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds