Wall clock time and date at job start Mon Mar 30 2020 06:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46963 * 2 1 4 4 C 1.52996 * 109.47153 * 119.99630 * 2 1 3 5 5 N 1.46902 * 109.47142 * 177.19764 * 4 2 1 6 6 C 1.46895 * 111.00350 * 287.72826 * 5 4 2 7 7 C 1.50701 * 109.47546 * 160.53612 * 6 5 4 8 8 H 1.07999 * 119.99307 * 4.72094 * 7 6 5 9 9 C 1.37870 * 120.00261 * 184.72860 * 7 6 5 10 10 N 1.31514 * 120.00194 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00183 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46989 * 359.97438 * 11 9 7 13 13 H 1.48490 * 109.47403 * 119.99687 * 11 9 7 14 14 H 1.48506 * 109.46862 * 239.99826 * 11 9 7 15 15 C 1.39247 * 111.00050 * 163.77493 * 5 4 2 16 16 C 1.39448 * 120.86858 * 60.24528 * 15 5 4 17 17 C 1.37907 * 119.07893 * 180.31667 * 16 15 5 18 18 N 1.31991 * 120.86735 * 359.70854 * 17 16 15 19 19 C 1.31997 * 121.91469 * 359.97438 * 18 17 16 20 20 C 1.38011 * 120.82388 * 0.02562 * 19 18 17 21 21 Cl 1.73601 * 120.47222 * 179.97438 * 20 19 18 22 22 H 1.09003 * 109.47021 * 299.99787 * 1 2 3 23 23 H 1.09001 * 109.46956 * 60.00054 * 1 2 3 24 24 H 1.08995 * 109.46841 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47451 * 240.00023 * 2 1 3 26 26 H 1.08996 * 109.46820 * 299.99870 * 3 2 1 27 27 H 1.09003 * 109.47078 * 60.00248 * 3 2 1 28 28 H 1.08996 * 109.46915 * 179.97438 * 3 2 1 29 29 H 1.09006 * 109.47167 * 57.20400 * 4 2 1 30 30 H 1.09000 * 109.47580 * 297.20378 * 4 2 1 31 31 H 1.09002 * 109.47356 * 280.53549 * 6 5 4 32 32 H 1.09004 * 109.47296 * 40.52983 * 6 5 4 33 33 H 0.97005 * 120.00783 * 180.02562 * 10 9 7 34 34 H 1.07997 * 120.45896 * 0.02562 * 16 15 5 35 35 H 1.07997 * 119.56622 * 179.72188 * 17 16 15 36 36 H 1.08000 * 119.58486 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5074 -0.7801 1.2159 6 6 3.9730 -1.7389 0.2051 7 6 5.4091 -1.4438 -0.1436 8 1 5.9477 -0.6756 0.3915 9 6 6.0353 -2.1542 -1.1456 10 7 5.3795 -3.0898 -1.7969 11 14 7.8152 -1.7879 -1.5782 12 1 8.3226 -0.6988 -0.7055 13 1 8.6355 -3.0087 -1.3746 14 1 7.9022 -1.3643 -2.9989 15 6 4.0232 -1.0893 2.4718 16 6 3.6911 -2.2855 3.1069 17 6 4.2178 -2.5512 4.3534 18 7 5.0304 -1.6937 4.9421 19 6 5.3740 -0.5539 4.3720 20 6 4.8904 -0.2128 3.1252 21 17 5.3478 1.2890 2.3841 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 3.1299 1.4426 0.0005 29 1 1.6363 -1.7334 1.2747 30 1 1.7182 -0.1792 2.1385 31 1 3.8962 -2.7512 0.6019 32 1 3.3566 -1.6517 -0.6897 33 1 5.8201 -3.5899 -2.5017 34 1 3.0269 -2.9918 2.6313 35 1 3.9623 -3.4732 4.8544 36 1 6.0420 0.1201 4.8876 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094272396.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:14 Heat of formation + Delta-G solvation = 7.982665 kcal Electronic energy + Delta-G solvation = -18820.563438 eV Core-core repulsion = 15943.656072 eV Total energy + Delta-G solvation = -2876.907366 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.44412 -38.93889 -37.31770 -35.78600 -34.65229 -31.98431 -31.61999 -29.24832 -27.86982 -26.33987 -25.06527 -24.26506 -22.52348 -20.59689 -18.77086 -18.11339 -17.49873 -17.02783 -16.70878 -16.13656 -15.74928 -15.41401 -14.89862 -14.80359 -14.59764 -14.21308 -13.64345 -13.55140 -13.15790 -13.07630 -12.83942 -12.80120 -12.64830 -12.55666 -12.18317 -11.92804 -11.78205 -11.72547 -11.37925 -11.25099 -10.61964 -10.56992 -10.31410 -9.79752 -9.25974 -8.19242 -6.24888 0.04259 0.14582 1.30268 1.36100 1.38737 1.50569 2.38806 2.70924 2.94881 3.15914 3.50927 3.88595 3.95236 3.98453 4.14727 4.18698 4.37399 4.54556 4.60571 4.65671 4.69229 4.86613 4.89554 5.03442 5.08347 5.14155 5.16079 5.27885 5.34324 5.49077 5.56768 5.64034 5.71955 6.03090 6.36842 6.55072 6.86661 6.90191 7.43068 8.91404 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.011983 B = 0.009561 C = 0.007148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.094675 B = 2927.917661 C = 3916.512920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.091 4.091 3 C -0.127 4.127 4 C 0.071 3.929 5 N -0.501 5.501 6 C 0.216 3.784 7 C -0.510 4.510 8 H 0.066 0.934 9 C 0.009 3.991 10 N -0.931 5.931 11 Si 0.949 3.051 12 H -0.267 1.267 13 H -0.282 1.282 14 H -0.279 1.279 15 C 0.163 3.837 16 C -0.203 4.203 17 C 0.109 3.891 18 N -0.493 5.493 19 C 0.110 3.890 20 C -0.083 4.083 21 Cl -0.047 7.047 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.053 0.947 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.045 0.955 29 H 0.031 0.969 30 H 0.076 0.924 31 H -0.027 1.027 32 H 0.023 0.977 33 H 0.262 0.738 34 H 0.138 0.862 35 H 0.189 0.811 36 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.605 5.539 9.435 12.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.110 4.110 3 C -0.185 4.185 4 C -0.056 4.056 5 N -0.223 5.223 6 C 0.092 3.908 7 C -0.549 4.549 8 H 0.084 0.916 9 C -0.189 4.189 10 N -0.572 5.572 11 Si 0.775 3.225 12 H -0.191 1.191 13 H -0.208 1.208 14 H -0.205 1.205 15 C 0.059 3.941 16 C -0.225 4.225 17 C -0.048 4.048 18 N -0.203 5.203 19 C -0.048 4.048 20 C -0.113 4.113 21 Cl -0.018 7.018 22 H 0.085 0.915 23 H 0.083 0.917 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.094 0.906 31 H -0.009 1.009 32 H 0.041 0.959 33 H 0.071 0.929 34 H 0.156 0.844 35 H 0.206 0.794 36 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -6.055 5.823 9.894 12.979 hybrid contribution 0.424 -0.679 -1.489 1.690 sum -5.631 5.143 8.405 11.350 Atomic orbital electron populations 1.21738 0.93111 1.01882 1.02588 1.21073 0.96320 0.96960 0.96611 1.21592 1.01195 0.94751 1.00933 1.22199 0.85369 0.98768 0.99235 1.59604 1.08893 1.51700 1.02063 1.19529 0.95439 0.86879 0.88917 1.21526 0.97174 1.18633 1.17555 0.91622 1.25659 1.01816 0.95125 0.96275 1.70048 1.38281 1.24310 1.24539 0.85630 0.80644 0.78105 0.78157 1.19135 1.20781 1.20462 1.19225 0.92699 0.91485 0.90691 1.22858 1.04019 0.97702 0.97944 1.23071 0.91420 0.98687 0.91593 1.67881 1.13620 1.03011 1.35790 1.22995 0.97324 0.94223 0.90262 1.22273 1.01465 0.91455 0.96135 1.98338 1.90905 1.29645 1.82940 0.91527 0.91733 0.92794 0.93471 0.92871 0.92474 0.93597 0.95085 0.90601 1.00915 0.95911 0.92921 0.84381 0.79378 0.79856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.19 71.98 0.66 -2.55 16 2 C -0.09 -2.85 2.92 -10.79 -0.03 -2.88 16 3 C -0.13 -3.89 9.06 71.98 0.65 -3.24 16 4 C 0.07 2.35 3.90 86.30 0.34 2.68 16 5 N -0.50 -20.12 3.22 -698.84 -2.25 -22.37 16 6 C 0.22 10.75 4.51 85.56 0.39 11.14 16 7 C -0.51 -27.95 8.95 25.60 0.23 -27.72 16 8 H 0.07 3.60 7.42 -2.91 -0.02 3.57 16 9 C 0.01 0.52 5.46 84.65 0.46 0.98 16 10 N -0.93 -54.60 13.29 21.44 0.28 -54.32 16 11 Si 0.95 44.65 29.54 68.60 2.03 46.68 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 13 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 14 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 15 C 0.16 6.12 4.23 38.57 0.16 6.29 16 16 C -0.20 -6.78 8.60 22.48 0.19 -6.59 16 17 C 0.11 3.14 11.17 84.59 0.94 4.09 16 18 N -0.49 -15.19 10.36 -196.06 -2.03 -17.22 16 19 C 0.11 3.37 10.98 84.61 0.93 4.29 16 20 C -0.08 -2.93 6.36 22.53 0.14 -2.79 16 21 Cl -0.05 -1.63 28.16 -2.72 -0.08 -1.71 16 22 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.05 1.79 6.48 -2.39 -0.02 1.77 16 26 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.04 1.68 7.68 -2.39 -0.02 1.66 16 29 H 0.03 1.02 7.74 -2.38 -0.02 1.01 16 30 H 0.08 2.28 7.97 -2.39 -0.02 2.26 16 31 H -0.03 -1.43 7.02 -2.39 -0.02 -1.45 16 32 H 0.02 1.23 6.24 -2.38 -0.01 1.22 16 33 H 0.26 14.59 8.31 -92.70 -0.77 13.82 16 34 H 0.14 4.42 7.47 -2.91 -0.02 4.40 16 35 H 0.19 3.98 8.06 -2.91 -0.02 3.96 16 36 H 0.18 4.51 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -61.76 314.37 4.08 -57.67 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: 1.06 Total: 7.57 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: 5.07 Total: -16.30 kcal Atomic # 7 Polarization: -89.92 SS G_CDS: -4.00 Total: -93.91 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -0.08 Total: -1.71 kcal Total: -61.76 4.08 -57.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094272396.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.657 kcal (2) G-P(sol) polarization free energy of solvation -61.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds