Wall clock time and date at job start Mon Mar 30 2020 07:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46792 * 2 1 4 4 O 1.42897 * 109.47229 * 240.00205 * 2 1 3 5 5 C 1.50699 * 109.47214 * 119.99526 * 2 1 3 6 6 C 1.38178 * 120.01240 * 95.00669 * 5 2 1 7 7 C 1.38433 * 120.02849 * 180.29718 * 6 5 2 8 8 F 1.35097 * 119.96527 * 179.70021 * 7 6 5 9 9 C 1.38482 * 120.05764 * 359.44546 * 7 6 5 10 10 C 1.38119 * 120.03239 * 0.55605 * 9 7 6 11 11 C 1.38685 * 120.01849 * 275.02692 * 5 2 1 12 12 O 1.35946 * 120.02896 * 359.95233 * 11 5 2 13 13 C 1.42901 * 116.99820 * 179.97438 * 12 11 5 14 14 C 1.53007 * 109.46898 * 180.02562 * 13 12 11 15 15 C 1.52993 * 109.47013 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.47114 * 179.97438 * 15 14 13 17 17 H 1.07994 * 120.00269 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99973 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00054 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99723 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47164 * 60.00809 * 20 18 16 22 22 H 1.48503 * 109.46886 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47228 * 300.00412 * 20 18 16 24 24 H 1.09001 * 109.47231 * 299.99580 * 1 2 3 25 25 H 1.08998 * 109.47246 * 60.00354 * 1 2 3 26 26 H 1.09004 * 109.46792 * 180.02562 * 1 2 3 27 27 H 0.96697 * 113.99932 * 179.97438 * 4 2 1 28 28 H 1.08002 * 119.98243 * 0.02562 * 6 5 2 29 29 H 1.08004 * 119.97990 * 180.24970 * 9 7 6 30 30 H 1.08004 * 120.01862 * 179.70258 * 10 9 7 31 31 H 1.08993 * 109.47311 * 300.00246 * 13 12 11 32 32 H 1.08996 * 109.46831 * 60.00498 * 13 12 11 33 33 H 1.08993 * 109.47197 * 300.00140 * 14 13 12 34 34 H 1.08998 * 109.46840 * 60.00052 * 14 13 12 35 35 H 1.09001 * 109.47697 * 300.00551 * 15 14 13 36 36 H 1.09012 * 109.47072 * 60.00108 * 15 14 13 37 37 H 0.96994 * 120.00383 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0323 -0.7103 1.2305 6 6 2.3612 -2.0510 1.1688 7 6 2.8168 -2.7053 2.3005 8 9 3.1322 -4.0175 2.2402 9 6 2.9546 -2.0146 3.4928 10 6 2.6266 -0.6745 3.5573 11 6 2.1644 -0.0189 2.4254 12 8 1.8418 1.3003 2.4874 13 6 2.0020 1.9487 3.7507 14 6 1.5919 3.4175 3.6257 15 6 1.7628 4.1116 4.9783 16 6 1.3595 5.5584 4.8551 17 1 1.0153 5.9441 3.9069 18 6 1.4290 6.3894 5.9532 19 7 1.8477 5.9196 7.1079 20 14 0.9284 8.1826 5.8005 21 1 -0.4925 8.2655 5.3773 22 1 1.0945 8.8563 7.1134 23 1 1.7859 8.8515 4.7894 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 2.9703 -0.7114 -1.2331 28 1 2.2585 -2.5896 0.2384 29 1 3.3141 -2.5254 4.3740 30 1 2.7296 -0.1372 4.4886 31 1 1.3728 1.4581 4.4933 32 1 3.0451 1.8875 4.0607 33 1 2.2207 3.9083 2.8830 34 1 0.5487 3.4783 3.3158 35 1 1.1338 3.6206 5.7208 36 1 2.8061 4.0507 5.2887 37 1 1.8970 6.5042 7.8803 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094621531.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:57 Heat of formation + Delta-G solvation = -150.336699 kcal Electronic energy + Delta-G solvation = -19792.914869 eV Core-core repulsion = 16448.513134 eV Total energy + Delta-G solvation = -3344.401735 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.85161 -41.43522 -38.97814 -37.59045 -35.95264 -33.77255 -33.05953 -31.10944 -30.06296 -28.65265 -25.61335 -24.88391 -23.20663 -22.41315 -21.68868 -19.29946 -18.68317 -18.49645 -18.07239 -17.32580 -17.20389 -16.53876 -16.50628 -15.84812 -15.67020 -15.20109 -15.11711 -14.81887 -14.33631 -14.01576 -13.80706 -13.47943 -13.42478 -13.26405 -13.02846 -12.75864 -12.66360 -12.50539 -12.29551 -12.08930 -11.79335 -11.53210 -11.43378 -11.25747 -11.07435 -10.55551 -10.10153 -9.11558 -8.21567 -6.32096 0.04450 0.14031 1.41972 1.44097 1.52018 2.11933 2.42750 2.44636 3.12730 3.16239 3.31306 3.52298 3.78075 3.96256 4.06147 4.07804 4.20655 4.21836 4.34874 4.46223 4.54652 4.69565 4.84105 4.87337 4.90743 4.94703 5.07059 5.08738 5.16572 5.22292 5.28019 5.48855 5.67558 5.68257 5.81798 6.19537 6.33129 6.78491 6.83598 7.37315 8.90061 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.027297 B = 0.003545 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.510522 B = 7897.339106 C = 8763.951132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.156 3.844 3 H 0.068 0.932 4 O -0.569 6.569 5 C -0.137 4.137 6 C -0.097 4.097 7 C 0.044 3.956 8 F -0.146 7.146 9 C -0.108 4.108 10 C -0.187 4.187 11 C 0.121 3.879 12 O -0.317 6.317 13 C 0.068 3.932 14 C -0.096 4.096 15 C 0.028 3.972 16 C -0.546 4.546 17 H 0.061 0.939 18 C 0.003 3.997 19 N -0.931 5.931 20 Si 0.963 3.037 21 H -0.267 1.267 22 H -0.283 1.283 23 H -0.267 1.267 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.393 0.607 28 H 0.159 0.841 29 H 0.157 0.843 30 H 0.148 0.852 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.000 1.000 36 H 0.000 1.000 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.558 -15.926 -11.749 19.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.097 3.903 3 H 0.086 0.914 4 O -0.377 6.377 5 C -0.138 4.138 6 C -0.116 4.116 7 C 0.025 3.975 8 F -0.125 7.125 9 C -0.126 4.126 10 C -0.206 4.206 11 C 0.075 3.925 12 O -0.231 6.231 13 C -0.006 4.006 14 C -0.133 4.133 15 C -0.009 4.009 16 C -0.584 4.584 17 H 0.079 0.921 18 C -0.195 4.195 19 N -0.571 5.571 20 Si 0.787 3.213 21 H -0.192 1.192 22 H -0.209 1.209 23 H -0.192 1.192 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.243 0.757 28 H 0.176 0.824 29 H 0.175 0.825 30 H 0.165 0.835 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.891 -15.851 -11.834 19.801 hybrid contribution 0.612 0.709 0.866 1.275 sum 1.503 -15.142 -10.968 18.758 Atomic orbital electron populations 1.21718 0.92116 1.02859 1.02904 1.20398 0.95459 0.93862 0.80533 0.91404 1.86468 1.28486 1.79961 1.42737 1.19904 1.05034 0.93881 0.94997 1.20871 0.98685 0.93291 0.98718 1.17651 1.05643 0.78654 0.95585 1.91473 1.91134 1.32747 1.97130 1.21172 0.99718 0.94022 0.97725 1.21345 1.04761 0.95546 0.98929 1.19099 0.95375 0.83763 0.94244 1.86074 1.81584 1.19789 1.35646 1.22951 1.01364 0.93263 0.83072 1.21417 1.01355 0.91458 0.99108 1.18913 0.95654 0.94405 0.91950 1.21619 1.44237 0.96185 0.96345 0.92101 1.25922 0.95108 1.03558 0.94930 1.70062 1.47989 1.37727 1.01335 0.85530 0.79195 0.79108 0.77428 1.19216 1.20876 1.19221 0.91284 0.90913 0.91849 0.75718 0.82357 0.82541 0.83454 0.91459 0.91442 0.92146 0.92112 0.98170 0.98179 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.54 71.98 0.69 -2.23 16 2 C 0.16 3.37 3.52 29.85 0.10 3.47 16 3 H 0.07 1.57 7.69 -2.38 -0.02 1.55 16 4 O -0.57 -10.73 12.17 -148.98 -1.81 -12.54 16 5 C -0.14 -3.12 5.05 -19.77 -0.10 -3.22 16 6 C -0.10 -2.01 9.31 22.30 0.21 -1.81 16 7 C 0.04 0.96 7.30 22.37 0.16 1.12 16 8 F -0.15 -3.28 17.27 44.97 0.78 -2.51 16 9 C -0.11 -2.26 10.02 22.30 0.22 -2.03 16 10 C -0.19 -4.39 9.04 22.36 0.20 -4.19 16 11 C 0.12 3.14 6.66 22.49 0.15 3.29 16 12 O -0.32 -9.35 9.27 -92.94 -0.86 -10.21 16 13 C 0.07 2.14 4.74 71.98 0.34 2.48 16 14 C -0.10 -3.72 5.52 30.59 0.17 -3.55 16 15 C 0.03 1.39 4.97 29.85 0.15 1.54 16 16 C -0.55 -30.11 9.11 25.60 0.23 -29.88 16 17 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 18 C 0.00 0.17 5.46 84.66 0.46 0.63 16 19 N -0.93 -55.01 13.29 21.45 0.28 -54.73 16 20 Si 0.96 43.15 29.54 68.60 2.03 45.18 16 21 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 24 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.06 1.27 8.14 -2.38 -0.02 1.26 16 27 H 0.39 4.64 9.06 -74.06 -0.67 3.97 16 28 H 0.16 2.81 7.35 -2.91 -0.02 2.79 16 29 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 30 H 0.15 3.26 6.30 -2.91 -0.02 3.24 16 31 H 0.07 2.02 7.66 -2.39 -0.02 2.00 16 32 H 0.07 2.02 7.66 -2.39 -0.02 2.00 16 33 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 36 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 37 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -62.36 319.90 3.81 -58.55 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 0.40 Total: 10.62 kcal Atomic # 6 Polarization: -37.37 SS G_CDS: 2.99 Total: -34.38 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.28 Total: -54.73 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -2.67 Total: -22.75 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.78 Total: -2.51 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -62.36 3.81 -58.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094621531.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.782 kcal (2) G-P(sol) polarization free energy of solvation -62.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds