Wall clock time and date at job start Mon Mar 30 2020 07:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47269 * 2 1 4 4 O 1.42903 * 109.46459 * 119.99893 * 2 1 3 5 5 C 1.50696 * 109.47222 * 239.99559 * 2 1 3 6 6 C 1.38168 * 120.01874 * 264.72446 * 5 2 1 7 7 C 1.38436 * 120.03461 * 179.79525 * 6 5 2 8 8 F 1.35096 * 119.97185 * 180.23557 * 7 6 5 9 9 C 1.38479 * 120.05525 * 0.45864 * 7 6 5 10 10 C 1.38127 * 120.03057 * 359.79891 * 9 7 6 11 11 C 1.38682 * 120.01191 * 85.00478 * 5 2 1 12 12 O 1.35943 * 120.03426 * 359.95336 * 11 5 2 13 13 C 1.42898 * 117.00240 * 179.97438 * 12 11 5 14 14 C 1.52997 * 109.47039 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.47332 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47358 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00589 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99810 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99790 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00211 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47281 * 90.00039 * 20 18 16 22 22 H 1.48510 * 109.47029 * 209.99699 * 20 18 16 23 23 H 1.48494 * 109.46849 * 329.99425 * 20 18 16 24 24 H 1.08997 * 109.47258 * 300.00172 * 1 2 3 25 25 H 1.08997 * 109.46943 * 60.00345 * 1 2 3 26 26 H 1.08999 * 109.47269 * 180.02562 * 1 2 3 27 27 H 0.96700 * 114.00311 * 60.00313 * 4 2 1 28 28 H 1.08004 * 119.98500 * 0.02562 * 6 5 2 29 29 H 1.07995 * 119.98385 * 179.77085 * 9 7 6 30 30 H 1.07998 * 120.01611 * 179.97438 * 10 9 7 31 31 H 1.08990 * 109.47530 * 300.00077 * 13 12 11 32 32 H 1.09010 * 109.46826 * 60.00445 * 13 12 11 33 33 H 1.09001 * 109.47319 * 300.00066 * 14 13 12 34 34 H 1.09001 * 109.47337 * 60.00325 * 14 13 12 35 35 H 1.08999 * 109.47240 * 300.00402 * 15 14 13 36 36 H 1.09010 * 109.47095 * 59.99909 * 15 14 13 37 37 H 0.97004 * 120.00173 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0062 -0.6737 1.1669 5 6 2.0324 -0.7105 -1.2304 6 6 2.3665 -2.0497 -1.1672 7 6 2.8240 -2.7037 -2.2983 8 9 3.1458 -4.0143 -2.2363 9 6 2.9564 -2.0145 -3.4921 10 6 2.6281 -0.6744 -3.5568 11 6 2.1650 -0.0189 -2.4251 12 8 1.8412 1.2999 -2.4876 13 6 2.0032 1.9487 -3.7504 14 6 1.5914 3.4169 -3.6260 15 6 1.7642 4.1115 -4.9783 16 6 1.3592 5.5578 -4.8556 17 1 1.0127 5.9431 -3.9080 18 6 1.4309 6.3892 -5.9531 19 7 1.0770 7.6514 -5.8461 20 14 2.0295 5.7228 -7.5923 21 1 0.8735 5.2076 -8.3691 22 1 2.6940 6.8096 -8.3556 23 1 2.9970 4.6215 -7.3552 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.7209 -1.5952 1.2330 28 1 2.2672 -2.5874 -0.2359 29 1 3.3169 -2.5250 -4.3729 30 1 2.7319 -0.1371 -4.4878 31 1 3.0469 1.8886 -4.0586 32 1 1.3757 1.4575 -4.4943 33 1 0.5474 3.4767 -3.3181 34 1 2.2183 3.9084 -2.8820 35 1 2.8079 4.0517 -5.2867 36 1 1.1369 3.6199 -5.7220 37 1 1.1278 8.2365 -6.6182 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094621532.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:01 Heat of formation + Delta-G solvation = -127.969605 kcal Electronic energy + Delta-G solvation = -19851.684608 eV Core-core repulsion = 16508.252782 eV Total energy + Delta-G solvation = -3343.431825 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.99032 -40.52605 -38.13223 -36.77880 -34.20768 -32.34303 -31.80144 -30.27502 -29.09143 -27.42461 -24.50559 -23.59029 -21.98502 -21.50965 -20.25096 -18.51656 -17.59916 -17.14875 -16.65348 -16.25586 -16.10217 -15.62851 -15.03482 -14.90864 -14.51599 -14.25317 -14.02584 -13.74748 -13.18605 -12.94350 -12.80360 -12.69812 -12.12510 -12.09171 -11.92701 -11.67507 -11.22435 -11.18814 -10.87688 -10.69168 -10.35495 -10.14547 -9.92946 -9.80566 -9.30864 -9.26756 -8.62123 -8.17601 -6.11829 -4.11273 0.88356 1.03138 3.18678 3.24221 3.30604 3.32364 3.33639 3.99615 4.19702 4.33883 4.37261 4.48908 4.77094 4.96233 5.00543 5.06356 5.20550 5.29391 5.31883 5.35830 5.45835 5.59875 5.69982 5.71517 5.90748 5.97006 5.99598 6.16102 6.29198 6.30254 6.55580 6.68422 7.11843 7.24789 7.31847 7.38526 7.68450 8.44627 8.92672 9.49228 11.01424 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.025224 B = 0.003836 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.782538 B = 7297.753165 C = 8257.674385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.152 3.848 3 H 0.119 0.881 4 O -0.557 6.557 5 C -0.127 4.127 6 C -0.110 4.110 7 C 0.054 3.946 8 F -0.144 7.144 9 C -0.111 4.111 10 C -0.180 4.180 11 C 0.141 3.859 12 O -0.308 6.308 13 C 0.054 3.946 14 C -0.101 4.101 15 C -0.010 4.010 16 C -0.523 4.523 17 H 0.074 0.926 18 C 0.068 3.932 19 N -0.900 5.900 20 Si 0.880 3.120 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.266 1.266 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.056 0.944 27 H 0.370 0.630 28 H 0.138 0.862 29 H 0.137 0.863 30 H 0.142 0.858 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.018 0.982 36 H 0.014 0.986 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.588 -21.121 7.972 22.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.093 3.907 3 H 0.137 0.863 4 O -0.363 6.363 5 C -0.129 4.129 6 C -0.129 4.129 7 C 0.035 3.965 8 F -0.122 7.122 9 C -0.130 4.130 10 C -0.199 4.199 11 C 0.094 3.906 12 O -0.221 6.221 13 C -0.020 4.020 14 C -0.138 4.138 15 C -0.047 4.047 16 C -0.561 4.561 17 H 0.092 0.908 18 C -0.134 4.134 19 N -0.539 5.539 20 Si 0.707 3.293 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.191 1.191 24 H 0.088 0.912 25 H 0.093 0.907 26 H 0.075 0.925 27 H 0.218 0.782 28 H 0.156 0.844 29 H 0.155 0.845 30 H 0.160 0.840 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.036 0.964 36 H 0.032 0.968 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.777 -20.264 8.127 21.905 hybrid contribution 0.187 -1.070 -1.487 1.842 sum 1.964 -21.333 6.640 22.429 Atomic orbital electron populations 1.22437 0.94975 1.02455 1.03625 1.20670 0.93306 0.96288 0.80391 0.86344 1.86663 1.77252 1.28910 1.43435 1.19753 1.04628 0.93413 0.95073 1.20586 1.00637 0.93753 0.97931 1.17428 1.05322 0.78720 0.95074 1.91478 1.90938 1.32733 1.97096 1.20945 1.00622 0.94411 0.97049 1.21222 1.04687 0.95044 0.98955 1.18827 0.94276 0.84386 0.93149 1.86133 1.80861 1.18707 1.36361 1.23295 1.00896 0.95245 0.82568 1.21527 1.02010 0.89116 1.01171 1.19514 0.96798 0.96631 0.91758 1.21052 1.44429 0.92235 0.98404 0.90793 1.25023 0.94722 0.94720 0.98929 1.69908 1.48221 1.04929 1.30843 0.86780 0.79500 0.78917 0.84079 1.20217 1.21245 1.19081 0.91242 0.90694 0.92492 0.78200 0.84417 0.84518 0.84000 0.92112 0.92129 0.91494 0.91435 0.96358 0.96808 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.71 9.52 37.16 0.35 -1.36 16 2 C 0.15 1.68 3.55 -27.88 -0.10 1.58 16 3 H 0.12 1.48 7.69 -51.93 -0.40 1.08 16 4 O -0.56 -5.79 12.98 -35.23 -0.46 -6.25 16 5 C -0.13 -1.48 5.08 -104.49 -0.53 -2.01 16 6 C -0.11 -1.15 9.28 -39.53 -0.37 -1.51 16 7 C 0.05 0.60 7.30 -39.42 -0.29 0.31 16 8 F -0.14 -1.64 17.27 2.25 0.04 -1.60 16 9 C -0.11 -1.20 10.02 -39.53 -0.40 -1.59 16 10 C -0.18 -2.11 9.04 -39.44 -0.36 -2.46 16 11 C 0.14 1.82 6.66 -39.23 -0.26 1.56 16 12 O -0.31 -4.47 9.27 -19.56 -0.18 -4.65 16 13 C 0.05 0.81 4.74 37.16 0.18 0.99 16 14 C -0.10 -1.87 5.52 -26.73 -0.15 -2.02 16 15 C -0.01 -0.22 4.04 -27.89 -0.11 -0.33 16 16 C -0.52 -14.50 9.66 -34.44 -0.33 -14.83 16 17 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 18 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 19 N -0.90 -27.30 13.96 55.43 0.77 -26.52 16 20 Si 0.88 21.02 27.47 -169.99 -4.67 16.35 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.37 2.41 7.33 45.56 0.33 2.74 16 28 H 0.14 1.06 6.40 -52.48 -0.34 0.73 16 29 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.14 1.51 6.30 -52.49 -0.33 1.18 16 31 H 0.06 0.85 7.66 -51.93 -0.40 0.45 16 32 H 0.06 0.83 7.66 -51.92 -0.40 0.44 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 36 H 0.01 0.30 7.57 -51.92 -0.39 -0.09 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 314.45 15.07 4.74 4.74 Total: -1.00 -30.74 314.45 -6.63 -37.37 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -4.42 Total: 0.41 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: -2.46 Total: -19.85 kcal Atomic # 7 Polarization: -27.30 SS G_CDS: 0.77 Total: -26.52 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: -0.64 Total: -10.90 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.74 -6.63 -37.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094621532.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.595 kcal (2) G-P(sol) polarization free energy of solvation -30.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds