Wall clock time and date at job start Mon Mar 30 2020 07:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47269 * 2 1 4 4 O 1.42903 * 109.46459 * 119.99893 * 2 1 3 5 5 C 1.50696 * 109.47222 * 239.99559 * 2 1 3 6 6 C 1.38168 * 120.01874 * 264.72446 * 5 2 1 7 7 C 1.38436 * 120.03461 * 179.79525 * 6 5 2 8 8 F 1.35096 * 119.97185 * 180.23557 * 7 6 5 9 9 C 1.38479 * 120.05525 * 0.45864 * 7 6 5 10 10 C 1.38127 * 120.03057 * 359.79891 * 9 7 6 11 11 C 1.38682 * 120.01191 * 85.00478 * 5 2 1 12 12 O 1.35943 * 120.03426 * 359.95336 * 11 5 2 13 13 C 1.42898 * 117.00240 * 179.97438 * 12 11 5 14 14 C 1.52997 * 109.47039 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.47332 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47358 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00589 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99810 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99790 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00211 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47281 * 90.00039 * 20 18 16 22 22 H 1.48510 * 109.47029 * 209.99699 * 20 18 16 23 23 H 1.48494 * 109.46849 * 329.99425 * 20 18 16 24 24 H 1.08997 * 109.47258 * 300.00172 * 1 2 3 25 25 H 1.08997 * 109.46943 * 60.00345 * 1 2 3 26 26 H 1.08999 * 109.47269 * 180.02562 * 1 2 3 27 27 H 0.96700 * 114.00311 * 60.00313 * 4 2 1 28 28 H 1.08004 * 119.98500 * 0.02562 * 6 5 2 29 29 H 1.07995 * 119.98385 * 179.77085 * 9 7 6 30 30 H 1.07998 * 120.01611 * 179.97438 * 10 9 7 31 31 H 1.08990 * 109.47530 * 300.00077 * 13 12 11 32 32 H 1.09010 * 109.46826 * 60.00445 * 13 12 11 33 33 H 1.09001 * 109.47319 * 300.00066 * 14 13 12 34 34 H 1.09001 * 109.47337 * 60.00325 * 14 13 12 35 35 H 1.08999 * 109.47240 * 300.00402 * 15 14 13 36 36 H 1.09010 * 109.47095 * 59.99909 * 15 14 13 37 37 H 0.97004 * 120.00173 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0062 -0.6737 1.1669 5 6 2.0324 -0.7105 -1.2304 6 6 2.3665 -2.0497 -1.1672 7 6 2.8240 -2.7037 -2.2983 8 9 3.1458 -4.0143 -2.2363 9 6 2.9564 -2.0145 -3.4921 10 6 2.6281 -0.6744 -3.5568 11 6 2.1650 -0.0189 -2.4251 12 8 1.8412 1.2999 -2.4876 13 6 2.0032 1.9487 -3.7504 14 6 1.5914 3.4169 -3.6260 15 6 1.7642 4.1115 -4.9783 16 6 1.3592 5.5578 -4.8556 17 1 1.0127 5.9431 -3.9080 18 6 1.4309 6.3892 -5.9531 19 7 1.0770 7.6514 -5.8461 20 14 2.0295 5.7228 -7.5923 21 1 0.8735 5.2076 -8.3691 22 1 2.6940 6.8096 -8.3556 23 1 2.9970 4.6215 -7.3552 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.7209 -1.5952 1.2330 28 1 2.2672 -2.5874 -0.2359 29 1 3.3169 -2.5250 -4.3729 30 1 2.7319 -0.1371 -4.4878 31 1 3.0469 1.8886 -4.0586 32 1 1.3757 1.4575 -4.4943 33 1 0.5474 3.4767 -3.3181 34 1 2.2183 3.9084 -2.8820 35 1 2.8079 4.0517 -5.2867 36 1 1.1369 3.6199 -5.7220 37 1 1.1278 8.2365 -6.6182 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094621532.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:00 Heat of formation + Delta-G solvation = -147.696763 kcal Electronic energy + Delta-G solvation = -19852.540041 eV Core-core repulsion = 16508.252782 eV Total energy + Delta-G solvation = -3344.287259 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.84856 -41.45401 -39.09226 -37.65285 -35.95549 -33.92012 -32.99439 -31.13568 -30.11698 -28.94871 -25.54375 -24.88449 -23.08059 -22.53422 -21.73486 -19.45012 -19.00007 -18.42772 -17.89670 -17.27456 -17.02434 -16.53312 -16.33056 -15.86365 -15.70777 -15.37261 -15.14743 -14.97204 -14.75579 -14.02202 -13.91039 -13.86034 -13.50764 -13.21040 -12.90155 -12.75869 -12.67740 -12.32677 -12.08177 -11.85501 -11.84657 -11.72718 -11.41327 -11.35052 -11.17012 -10.76711 -10.08984 -9.09807 -8.29294 -6.34926 0.05777 0.14761 1.37978 1.40235 1.51538 2.13589 2.36876 2.44939 3.06186 3.17283 3.41140 3.52058 3.69846 3.94446 4.05613 4.08061 4.17150 4.19010 4.24834 4.42743 4.48615 4.66328 4.77831 4.78832 4.84313 4.88905 4.96531 5.07565 5.13205 5.22972 5.31540 5.43354 5.51839 5.62640 5.68325 6.25853 6.34200 6.73744 6.75465 7.29743 8.87651 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.025224 B = 0.003836 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.782538 B = 7297.753165 C = 8257.674385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.156 3.844 3 H 0.097 0.903 4 O -0.567 6.567 5 C -0.133 4.133 6 C -0.107 4.107 7 C 0.047 3.953 8 F -0.145 7.145 9 C -0.111 4.111 10 C -0.184 4.184 11 C 0.118 3.882 12 O -0.321 6.321 13 C 0.065 3.935 14 C -0.095 4.095 15 C -0.007 4.007 16 C -0.537 4.537 17 H 0.029 0.971 18 C 0.002 3.998 19 N -0.953 5.953 20 Si 0.954 3.046 21 H -0.265 1.265 22 H -0.287 1.287 23 H -0.240 1.240 24 H 0.072 0.928 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.388 0.612 28 H 0.164 0.836 29 H 0.158 0.842 30 H 0.154 0.846 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.028 0.972 36 H 0.028 0.972 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.363 -24.052 6.975 25.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.097 3.903 3 H 0.115 0.885 4 O -0.375 6.375 5 C -0.134 4.134 6 C -0.125 4.125 7 C 0.028 3.972 8 F -0.124 7.124 9 C -0.129 4.129 10 C -0.202 4.202 11 C 0.072 3.928 12 O -0.235 6.235 13 C -0.010 4.010 14 C -0.132 4.132 15 C -0.044 4.044 16 C -0.575 4.575 17 H 0.048 0.952 18 C -0.195 4.195 19 N -0.593 5.593 20 Si 0.777 3.223 21 H -0.190 1.190 22 H -0.213 1.213 23 H -0.163 1.163 24 H 0.091 0.909 25 H 0.079 0.921 26 H 0.093 0.907 27 H 0.238 0.762 28 H 0.181 0.819 29 H 0.176 0.824 30 H 0.171 0.829 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.551 -23.235 7.154 24.445 hybrid contribution -0.078 -0.181 -1.032 1.051 sum 2.473 -23.416 6.122 24.329 Atomic orbital electron populations 1.22378 0.94040 1.03436 1.03077 1.20506 0.93934 0.95357 0.80544 0.88542 1.86629 1.77474 1.30397 1.43015 1.19866 1.04769 0.93911 0.94844 1.20832 0.99536 0.93251 0.98905 1.17612 1.05354 0.78727 0.95554 1.91478 1.90959 1.32839 1.97126 1.21189 0.99875 0.94096 0.97765 1.21370 1.04448 0.95476 0.98929 1.19070 0.95688 0.83716 0.94318 1.86076 1.81583 1.19933 1.35936 1.23010 1.01902 0.92781 0.83284 1.21288 1.01348 0.91815 0.98797 1.19432 0.97238 0.93574 0.94183 1.21457 1.43967 0.95318 0.96769 0.95216 1.26079 0.94896 0.94819 1.03672 1.70080 1.50148 1.06778 1.32339 0.85607 0.79716 0.78840 0.78181 1.18973 1.21265 1.16279 0.90928 0.92070 0.90731 0.76177 0.81890 0.82404 0.82887 0.90765 0.90439 0.92477 0.92708 0.95332 0.95321 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 9.52 71.98 0.69 -2.46 16 2 C 0.16 3.29 3.55 29.85 0.11 3.40 16 3 H 0.10 2.45 7.69 -2.39 -0.02 2.43 16 4 O -0.57 -10.86 12.98 -148.98 -1.93 -12.80 16 5 C -0.13 -2.88 5.08 -19.78 -0.10 -2.98 16 6 C -0.11 -1.96 9.28 22.30 0.21 -1.75 16 7 C 0.05 0.92 7.30 22.37 0.16 1.08 16 8 F -0.15 -2.94 17.27 44.97 0.78 -2.17 16 9 C -0.11 -2.07 10.02 22.30 0.22 -1.84 16 10 C -0.18 -3.84 9.04 22.36 0.20 -3.64 16 11 C 0.12 2.88 6.66 22.49 0.15 3.03 16 12 O -0.32 -9.08 9.27 -92.91 -0.86 -9.94 16 13 C 0.06 1.82 4.74 71.98 0.34 2.16 16 14 C -0.09 -3.51 5.52 30.59 0.17 -3.34 16 15 C -0.01 -0.30 4.04 29.85 0.12 -0.18 16 16 C -0.54 -30.45 9.66 25.60 0.25 -30.20 16 17 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 18 C 0.00 0.11 5.47 84.65 0.46 0.58 16 19 N -0.95 -59.45 13.96 21.45 0.30 -59.15 16 20 Si 0.95 42.57 27.47 68.60 1.88 44.45 16 21 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 22 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 23 H -0.24 -9.60 6.54 99.48 0.65 -8.95 16 24 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16 27 H 0.39 4.08 7.33 -74.06 -0.54 3.53 16 28 H 0.16 2.01 6.40 -2.91 -0.02 1.99 16 29 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 30 H 0.15 2.78 6.30 -2.91 -0.02 2.76 16 31 H 0.07 1.89 7.66 -2.39 -0.02 1.87 16 32 H 0.08 1.92 7.66 -2.38 -0.02 1.90 16 33 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.03 1.20 7.20 -2.39 -0.02 1.18 16 36 H 0.03 1.18 7.57 -2.38 -0.02 1.16 16 37 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -67.51 314.45 3.62 -63.88 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.48 Total: 11.85 kcal Atomic # 6 Polarization: -39.11 SS G_CDS: 2.98 Total: -36.14 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: 0.30 Total: -59.15 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -2.80 Total: -22.74 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.78 Total: -2.17 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 1.88 Total: 44.45 kcal Total: -67.51 3.62 -63.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094621532.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.812 kcal (2) G-P(sol) polarization free energy of solvation -67.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds