Wall clock time and date at job start Mon Mar 30 2020 07:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30580 * 1 3 3 Si 1.86801 * 119.99801 * 2 1 4 4 H 1.48496 * 109.47452 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47335 * 300.00321 * 3 2 1 6 6 H 1.48505 * 109.47295 * 60.00424 * 3 2 1 7 7 C 1.40349 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00021 * 179.97438 * 7 2 1 9 9 C 1.40185 * 119.99832 * 0.02562 * 7 2 1 10 10 N 1.32464 * 125.30814 * 0.19978 * 9 7 2 11 11 C 1.33971 * 109.78497 * 180.27716 * 10 9 7 12 12 C 1.40534 * 133.19869 * 179.72309 * 11 10 9 13 13 C 1.36350 * 119.85011 * 179.97438 * 12 11 10 14 14 C 1.39044 * 120.75875 * 359.97438 * 13 12 11 15 15 C 1.37956 * 120.57472 * 0.03179 * 14 13 12 16 16 C 1.38721 * 119.76670 * 359.97410 * 15 14 13 17 17 N 1.37856 * 125.30469 * 180.02562 * 9 7 2 18 18 C 1.46501 * 126.53593 * 359.97438 * 17 9 7 19 19 H 1.09003 * 109.35484 * 179.97438 * 18 17 9 20 20 C 1.50066 * 109.35640 * 299.69015 * 18 17 9 21 21 C 1.29447 * 124.07342 * 137.36748 * 20 18 17 22 22 C 1.50065 * 124.07677 * 359.49852 * 21 20 18 23 23 C 1.53028 * 110.14665 * 17.13776 * 22 21 20 24 24 C 1.53394 * 108.61400 * 310.45686 * 23 22 21 25 25 H 0.97003 * 120.00591 * 359.97438 * 1 2 3 26 26 H 1.08003 * 120.07540 * 359.95639 * 12 11 10 27 27 H 1.07999 * 119.62281 * 180.02562 * 13 12 11 28 28 H 1.08003 * 119.71375 * 180.02562 * 14 13 12 29 29 H 1.07996 * 120.12281 * 179.97438 * 15 14 13 30 30 H 1.07996 * 117.96456 * 317.33475 * 20 18 17 31 31 H 1.07996 * 117.96003 * 179.48658 * 21 20 18 32 32 H 1.09002 * 109.36102 * 256.92889 * 22 21 20 33 33 H 1.09000 * 109.24707 * 137.27105 * 22 21 20 34 34 H 1.09002 * 109.64314 * 70.24738 * 23 22 21 35 35 H 1.09002 * 109.64302 * 190.66569 * 23 22 21 36 36 H 1.08999 * 109.64445 * 187.22911 * 24 23 22 37 37 H 1.09002 * 109.63787 * 307.85542 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2398 1.6178 0.0000 4 1 3.6997 1.3466 0.0006 5 1 1.8810 2.3965 -1.2124 6 1 1.8811 2.3965 1.2126 7 6 2.0076 -1.2154 -0.0005 8 1 3.0876 -1.2153 -0.0010 9 6 1.3068 -2.4295 -0.0016 10 7 -0.0122 -2.5521 -0.0060 11 6 -0.3471 -3.8492 0.0004 12 6 -1.5795 -4.5246 0.0045 13 6 -1.6063 -5.8878 0.0104 14 6 -0.4257 -6.6223 0.0118 15 6 0.7976 -5.9844 0.0079 16 6 0.8515 -4.5983 0.0020 17 7 1.8828 -3.6819 -0.0017 18 6 3.3166 -3.9825 -0.0013 19 1 3.4592 -5.0631 -0.0011 20 6 3.9477 -3.3978 -1.2309 21 6 5.0838 -2.7774 -1.2379 22 6 5.9234 -2.5467 -0.0156 23 6 5.4831 -3.4841 1.1109 24 6 3.9593 -3.3892 1.2595 25 1 -0.4851 0.8400 0.0004 26 1 -2.5033 -3.9651 0.0034 27 1 -2.5555 -6.4031 0.0132 28 1 -0.4666 -7.7015 0.0161 29 1 1.7100 -6.5621 0.0094 30 1 3.4216 -3.5016 -2.1683 31 1 5.4503 -2.4027 -2.1821 32 1 5.8109 -1.5126 0.3101 33 1 6.9691 -2.7378 -0.2567 34 1 5.7643 -4.5084 0.8662 35 1 5.9615 -3.1859 2.0438 36 1 3.6411 -3.9502 2.1382 37 1 3.6656 -2.3445 1.3618 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123741290.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:31 Heat of formation + Delta-G solvation = 74.217392 kcal Electronic energy + Delta-G solvation = -20386.423493 eV Core-core repulsion = 17514.821130 eV Total energy + Delta-G solvation = -2871.602363 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.52870 -38.02071 -35.87729 -33.56408 -32.49588 -30.75902 -29.80950 -28.66870 -27.68365 -25.83104 -23.05545 -21.98875 -21.33104 -20.67772 -19.51651 -17.49139 -17.13240 -16.18621 -16.02649 -15.24175 -14.80988 -14.16628 -14.00559 -13.70890 -13.21512 -12.86524 -12.69565 -12.62554 -12.45561 -12.29440 -11.96747 -11.55986 -11.41039 -11.16799 -10.86441 -10.68517 -10.59264 -10.31962 -10.19185 -10.14263 -9.94503 -9.31864 -8.99775 -8.70210 -7.86907 -7.19997 -6.83308 -6.65741 -4.58651 2.27414 2.55432 2.73334 2.98247 3.02214 3.06153 3.80554 4.10678 4.14978 4.89487 5.02313 5.07371 5.22575 5.43531 5.53070 5.57519 5.67003 5.69925 5.77987 5.87652 5.88947 6.01863 6.06187 6.16760 6.21700 6.40699 6.53871 6.56387 6.65202 6.77999 6.89942 6.92388 7.04583 7.19456 7.30335 7.52049 7.63476 7.78543 7.93654 8.03777 8.35607 8.66850 9.06238 9.98441 10.23562 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.014395 B = 0.009358 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.608563 B = 2991.367661 C = 4622.802759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.716 5.716 2 C 0.076 3.924 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.435 4.435 8 H 0.093 0.907 9 C 0.424 3.576 10 N -0.538 5.538 11 C 0.110 3.890 12 C -0.130 4.130 13 C -0.124 4.124 14 C -0.183 4.183 15 C -0.104 4.104 16 C -0.005 4.005 17 N -0.533 5.533 18 C 0.195 3.805 19 H 0.083 0.917 20 C -0.142 4.142 21 C -0.151 4.151 22 C -0.090 4.090 23 C -0.114 4.114 24 C -0.138 4.138 25 H 0.278 0.722 26 H 0.107 0.893 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.697 -3.816 0.373 9.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.338 5.338 2 C -0.151 4.151 3 Si 0.735 3.265 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.472 4.472 8 H 0.111 0.889 9 C 0.188 3.812 10 N -0.261 5.261 11 C -0.018 4.018 12 C -0.152 4.152 13 C -0.144 4.144 14 C -0.204 4.204 15 C -0.126 4.126 16 C -0.113 4.113 17 N -0.229 5.229 18 C 0.091 3.909 19 H 0.101 0.899 20 C -0.161 4.161 21 C -0.170 4.170 22 C -0.127 4.127 23 C -0.152 4.152 24 C -0.176 4.176 25 H 0.089 0.911 26 H 0.125 0.875 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.112 0.888 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.055 -3.019 0.360 8.610 hybrid contribution 0.894 0.005 -0.165 0.909 sum 8.949 -3.014 0.195 9.445 Atomic orbital electron populations 1.69989 1.07169 1.28364 1.28286 1.25887 0.94861 1.00765 0.93579 0.86202 0.80652 0.80895 0.78765 1.18272 1.19671 1.19662 1.18663 0.94235 0.87202 1.47079 0.88871 1.20401 0.86997 0.83546 0.90243 1.71405 1.09229 1.12784 1.32729 1.19572 0.91993 0.91550 0.98674 1.19767 0.95014 0.93173 1.07203 1.20201 0.96890 0.93523 1.03826 1.20269 0.91866 0.97727 1.10495 1.19582 0.97031 0.90316 1.05652 1.18911 0.89919 0.91498 1.10932 1.45615 1.03166 1.06253 1.67839 1.19626 0.79263 0.98678 0.93329 0.89929 1.22229 0.95891 0.99373 0.98580 1.21912 0.96855 0.99631 0.98595 1.20454 0.98297 1.00267 0.93664 1.21567 0.95739 0.99515 0.98379 1.22178 0.94417 1.04314 0.96712 0.91124 0.87480 0.87890 0.87925 0.88759 0.87943 0.88019 0.90657 0.91547 0.92158 0.91630 0.91850 0.88768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.03 11.85 55.57 0.66 -18.37 16 2 C 0.08 1.88 5.50 -17.29 -0.10 1.79 16 3 Si 0.91 17.97 29.56 -169.99 -5.03 12.94 16 4 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 5 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 6 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.43 -10.94 7.67 -38.06 -0.29 -11.24 16 8 H 0.09 2.16 5.33 -52.49 -0.28 1.88 16 9 C 0.42 11.33 6.99 -155.68 -1.09 10.24 16 10 N -0.54 -15.53 9.33 -10.31 -0.10 -15.62 16 11 C 0.11 2.91 7.21 -84.89 -0.61 2.30 16 12 C -0.13 -3.03 10.07 -39.40 -0.40 -3.43 16 13 C -0.12 -2.48 9.96 -39.96 -0.40 -2.88 16 14 C -0.18 -3.56 10.04 -39.39 -0.40 -3.95 16 15 C -0.10 -2.18 9.88 -39.51 -0.39 -2.57 16 16 C -0.01 -0.13 6.88 -83.75 -0.58 -0.70 16 17 N -0.53 -12.53 2.68 -107.72 -0.29 -12.82 16 18 C 0.20 3.67 2.95 -69.16 -0.20 3.47 16 19 H 0.08 1.45 7.60 -51.93 -0.39 1.05 16 20 C -0.14 -2.50 7.89 -35.90 -0.28 -2.78 16 21 C -0.15 -2.27 9.60 -35.90 -0.34 -2.62 16 22 C -0.09 -1.17 6.12 -28.18 -0.17 -1.34 16 23 C -0.11 -1.50 5.99 -26.51 -0.16 -1.65 16 24 C -0.14 -2.35 5.37 -26.30 -0.14 -2.49 16 25 H 0.28 6.66 8.29 -40.82 -0.34 6.32 16 26 H 0.11 2.38 8.06 -52.48 -0.42 1.96 16 27 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16 28 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 29 H 0.09 1.73 7.74 -52.49 -0.41 1.33 16 30 H 0.10 1.93 8.06 -52.49 -0.42 1.50 16 31 H 0.10 1.38 8.06 -52.49 -0.42 0.95 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.09 1.82 5.49 -51.93 -0.28 1.54 16 LS Contribution 302.28 15.07 4.56 4.56 Total: -1.00 -29.77 302.28 -10.47 -40.24 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -4.73 Total: 6.95 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -5.55 Total: -17.87 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: 0.27 Total: -46.81 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.77 -10.47 -40.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123741290.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.455 kcal (2) G-P(sol) polarization free energy of solvation -29.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds