Wall clock time and date at job start Mon Mar 30 2020 07:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30580 * 1 3 3 Si 1.86801 * 119.99801 * 2 1 4 4 H 1.48496 * 109.47452 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47335 * 300.00321 * 3 2 1 6 6 H 1.48505 * 109.47295 * 60.00424 * 3 2 1 7 7 C 1.40349 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00021 * 179.97438 * 7 2 1 9 9 C 1.40185 * 119.99832 * 0.02562 * 7 2 1 10 10 N 1.32464 * 125.30814 * 0.19978 * 9 7 2 11 11 C 1.33971 * 109.78497 * 180.27716 * 10 9 7 12 12 C 1.40534 * 133.19869 * 179.72309 * 11 10 9 13 13 C 1.36350 * 119.85011 * 179.97438 * 12 11 10 14 14 C 1.39044 * 120.75875 * 359.97438 * 13 12 11 15 15 C 1.37956 * 120.57472 * 0.03179 * 14 13 12 16 16 C 1.38721 * 119.76670 * 359.97410 * 15 14 13 17 17 N 1.37856 * 125.30469 * 180.02562 * 9 7 2 18 18 C 1.46501 * 126.53593 * 359.97438 * 17 9 7 19 19 H 1.09003 * 109.35484 * 179.97438 * 18 17 9 20 20 C 1.50066 * 109.35640 * 299.69015 * 18 17 9 21 21 C 1.29447 * 124.07342 * 137.36748 * 20 18 17 22 22 C 1.50065 * 124.07677 * 359.49852 * 21 20 18 23 23 C 1.53028 * 110.14665 * 17.13776 * 22 21 20 24 24 C 1.53394 * 108.61400 * 310.45686 * 23 22 21 25 25 H 0.97003 * 120.00591 * 359.97438 * 1 2 3 26 26 H 1.08003 * 120.07540 * 359.95639 * 12 11 10 27 27 H 1.07999 * 119.62281 * 180.02562 * 13 12 11 28 28 H 1.08003 * 119.71375 * 180.02562 * 14 13 12 29 29 H 1.07996 * 120.12281 * 179.97438 * 15 14 13 30 30 H 1.07996 * 117.96456 * 317.33475 * 20 18 17 31 31 H 1.07996 * 117.96003 * 179.48658 * 21 20 18 32 32 H 1.09002 * 109.36102 * 256.92889 * 22 21 20 33 33 H 1.09000 * 109.24707 * 137.27105 * 22 21 20 34 34 H 1.09002 * 109.64314 * 70.24738 * 23 22 21 35 35 H 1.09002 * 109.64302 * 190.66569 * 23 22 21 36 36 H 1.08999 * 109.64445 * 187.22911 * 24 23 22 37 37 H 1.09002 * 109.63787 * 307.85542 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2398 1.6178 0.0000 4 1 3.6997 1.3466 0.0006 5 1 1.8810 2.3965 -1.2124 6 1 1.8811 2.3965 1.2126 7 6 2.0076 -1.2154 -0.0005 8 1 3.0876 -1.2153 -0.0010 9 6 1.3068 -2.4295 -0.0016 10 7 -0.0122 -2.5521 -0.0060 11 6 -0.3471 -3.8492 0.0004 12 6 -1.5795 -4.5246 0.0045 13 6 -1.6063 -5.8878 0.0104 14 6 -0.4257 -6.6223 0.0118 15 6 0.7976 -5.9844 0.0079 16 6 0.8515 -4.5983 0.0020 17 7 1.8828 -3.6819 -0.0017 18 6 3.3166 -3.9825 -0.0013 19 1 3.4592 -5.0631 -0.0011 20 6 3.9477 -3.3978 -1.2309 21 6 5.0838 -2.7774 -1.2379 22 6 5.9234 -2.5467 -0.0156 23 6 5.4831 -3.4841 1.1109 24 6 3.9593 -3.3892 1.2595 25 1 -0.4851 0.8400 0.0004 26 1 -2.5033 -3.9651 0.0034 27 1 -2.5555 -6.4031 0.0132 28 1 -0.4666 -7.7015 0.0161 29 1 1.7100 -6.5621 0.0094 30 1 3.4216 -3.5016 -2.1683 31 1 5.4503 -2.4027 -2.1821 32 1 5.8109 -1.5126 0.3101 33 1 6.9691 -2.7378 -0.2567 34 1 5.7643 -4.5084 0.8662 35 1 5.9615 -3.1859 2.0438 36 1 3.6411 -3.9502 2.1382 37 1 3.6656 -2.3445 1.3618 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123741290.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:31 Heat of formation + Delta-G solvation = 59.013601 kcal Electronic energy + Delta-G solvation = -20387.082779 eV Core-core repulsion = 17514.821130 eV Total energy + Delta-G solvation = -2872.261649 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.27101 -39.37187 -37.54742 -35.36908 -34.12661 -31.98772 -31.40091 -30.47561 -29.23998 -27.64609 -24.43721 -23.24505 -23.08431 -22.40840 -21.19561 -18.97054 -18.78318 -17.76650 -17.64715 -16.67164 -16.48126 -15.77017 -15.65036 -14.95241 -14.78718 -14.49519 -14.39196 -14.11424 -13.75265 -13.58027 -13.33305 -13.15275 -13.02637 -12.72039 -12.39594 -12.28879 -12.11068 -11.89368 -11.65658 -11.54783 -11.35735 -11.02091 -10.71002 -10.02733 -9.74907 -8.99528 -8.61078 -8.47804 -6.49681 0.51804 1.00878 1.26620 1.39226 1.42490 1.55850 2.16612 2.35931 2.49473 3.19276 3.63762 3.75312 3.80234 3.93768 4.04591 4.17993 4.28063 4.32424 4.43644 4.47916 4.57783 4.71098 4.74261 4.89870 4.94687 5.00499 5.06038 5.08058 5.20413 5.25208 5.31934 5.45716 5.55847 5.68690 5.74434 5.91582 5.93026 6.06468 6.21936 6.25435 6.56658 6.82566 7.25601 8.11463 8.45091 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.014395 B = 0.009358 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.608563 B = 2991.367661 C = 4622.802759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.028 3.972 3 Si 0.990 3.010 4 H -0.241 1.241 5 H -0.269 1.269 6 H -0.267 1.267 7 C -0.452 4.452 8 H 0.107 0.893 9 C 0.399 3.601 10 N -0.590 5.590 11 C 0.053 3.947 12 C -0.151 4.151 13 C -0.117 4.117 14 C -0.164 4.164 15 C -0.109 4.109 16 C -0.025 4.025 17 N -0.533 5.533 18 C 0.190 3.810 19 H 0.092 0.908 20 C -0.175 4.175 21 C -0.126 4.126 22 C -0.092 4.092 23 C -0.105 4.105 24 C -0.134 4.134 25 H 0.281 0.719 26 H 0.102 0.898 27 H 0.143 0.857 28 H 0.150 0.850 29 H 0.124 0.876 30 H 0.078 0.922 31 H 0.119 0.881 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.057 0.943 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.363 -5.210 0.583 12.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.194 4.194 3 Si 0.809 3.191 4 H -0.163 1.163 5 H -0.194 1.194 6 H -0.192 1.192 7 C -0.489 4.489 8 H 0.125 0.875 9 C 0.161 3.839 10 N -0.315 5.315 11 C -0.073 4.073 12 C -0.172 4.172 13 C -0.137 4.137 14 C -0.184 4.184 15 C -0.131 4.131 16 C -0.133 4.133 17 N -0.227 5.227 18 C 0.087 3.913 19 H 0.110 0.890 20 C -0.194 4.194 21 C -0.144 4.144 22 C -0.129 4.129 23 C -0.143 4.143 24 C -0.172 4.172 25 H 0.091 0.909 26 H 0.120 0.880 27 H 0.161 0.839 28 H 0.167 0.833 29 H 0.141 0.859 30 H 0.096 0.904 31 H 0.137 0.863 32 H 0.094 0.906 33 H 0.121 0.879 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.076 0.924 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.740 -4.470 0.570 11.647 hybrid contribution -0.003 0.216 -0.244 0.326 sum 10.738 -4.254 0.326 11.554 Atomic orbital electron populations 1.70143 1.09332 1.29508 1.30406 1.26997 0.95576 1.04585 0.92286 0.85044 0.79906 0.75461 0.78705 1.16323 1.19397 1.19210 1.19022 0.94851 0.87360 1.47714 0.87550 1.20721 0.87054 0.85124 0.91012 1.71257 1.11112 1.14732 1.34425 1.20121 0.94193 0.91616 1.01335 1.20048 0.94034 0.94888 1.08232 1.20651 0.99222 0.92129 1.01682 1.20868 0.90749 0.99992 1.06833 1.20032 0.99146 0.89058 1.04835 1.19365 0.89524 0.92906 1.11500 1.45818 1.04878 1.05182 1.66848 1.19943 0.76987 0.99526 0.94819 0.88976 1.22009 0.97341 1.02940 0.97146 1.22282 0.95528 0.96170 1.00452 1.20583 0.99741 1.00201 0.92336 1.21567 0.92351 1.00702 0.99702 1.22117 0.97455 1.02125 0.95511 0.90879 0.88019 0.83878 0.83277 0.85856 0.90391 0.86265 0.90575 0.87914 0.90566 0.89381 0.92445 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -43.49 11.85 21.89 0.26 -43.23 16 2 C 0.03 1.42 5.50 85.39 0.47 1.89 16 3 Si 0.99 37.49 29.56 68.60 2.03 39.52 16 4 H -0.24 -8.26 7.11 99.48 0.71 -7.56 16 5 H -0.27 -9.97 7.11 99.48 0.71 -9.27 16 6 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 7 C -0.45 -23.77 7.67 23.26 0.18 -23.59 16 8 H 0.11 5.06 5.33 -2.91 -0.02 5.05 16 9 C 0.40 22.57 6.99 133.69 0.93 23.50 16 10 N -0.59 -36.46 9.33 -186.52 -1.74 -38.20 16 11 C 0.05 2.96 7.21 40.14 0.29 3.25 16 12 C -0.15 -7.24 10.07 22.39 0.23 -7.01 16 13 C -0.12 -4.46 9.96 22.02 0.22 -4.24 16 14 C -0.16 -5.87 10.04 22.40 0.22 -5.64 16 15 C -0.11 -4.42 9.88 22.32 0.22 -4.20 16 16 C -0.02 -1.24 6.88 39.06 0.27 -0.97 16 17 N -0.53 -26.01 2.68 -494.71 -1.33 -27.34 16 18 C 0.19 7.17 2.95 44.20 0.13 7.30 16 19 H 0.09 3.18 7.60 -2.39 -0.02 3.16 16 20 C -0.18 -6.18 7.89 27.03 0.21 -5.97 16 21 C -0.13 -3.52 9.60 27.03 0.26 -3.26 16 22 C -0.09 -2.06 6.12 29.66 0.18 -1.88 16 23 C -0.11 -2.44 5.99 30.74 0.18 -2.26 16 24 C -0.13 -4.48 5.37 30.88 0.17 -4.31 16 25 H 0.28 14.34 8.29 -92.71 -0.77 13.57 16 26 H 0.10 4.79 8.06 -2.91 -0.02 4.76 16 27 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 28 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 29 H 0.12 4.19 7.74 -2.91 -0.02 4.17 16 30 H 0.08 3.07 8.06 -2.91 -0.02 3.05 16 31 H 0.12 2.91 8.06 -2.91 -0.02 2.88 16 32 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.08 1.56 8.12 -2.39 -0.02 1.54 16 35 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.07 2.61 5.49 -2.39 -0.01 2.59 16 Total: -1.00 -71.07 302.28 4.46 -66.62 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: 1.07 Total: 30.02 kcal Atomic # 6 Polarization: -31.56 SS G_CDS: 4.16 Total: -27.39 kcal Atomic # 7 Polarization: -105.96 SS G_CDS: -2.81 Total: -108.77 kcal Atomic # 14 Polarization: 37.49 SS G_CDS: 2.03 Total: 39.52 kcal Total: -71.07 4.46 -66.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123741290.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.632 kcal (2) G-P(sol) polarization free energy of solvation -71.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds