Wall clock time and date at job start Mon Mar 30 2020 07:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30588 * 1 3 3 Si 1.86798 * 120.00102 * 2 1 4 4 H 1.48496 * 109.47017 * 239.99919 * 3 2 1 5 5 H 1.48503 * 109.47209 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47167 * 119.99974 * 3 2 1 7 7 C 1.40345 * 119.99559 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99736 * 180.02562 * 7 2 1 9 9 C 1.40191 * 120.00499 * 359.97438 * 7 2 1 10 10 N 1.32460 * 125.30260 * 0.03514 * 9 7 2 11 11 C 1.33969 * 109.78562 * 179.97438 * 10 9 7 12 12 C 1.40532 * 133.20568 * 179.97438 * 11 10 9 13 13 C 1.36355 * 119.85015 * 179.97438 * 12 11 10 14 14 C 1.39046 * 120.76290 * 359.97438 * 13 12 11 15 15 C 1.37961 * 120.56862 * 0.02562 * 14 13 12 16 16 C 1.38717 * 119.76670 * 359.97438 * 15 14 13 17 17 N 1.37849 * 125.30635 * 179.97438 * 9 7 2 18 18 C 1.46505 * 126.53758 * 0.04511 * 17 9 7 19 19 H 1.08995 * 109.35692 * 179.97438 * 18 17 9 20 20 C 1.50063 * 109.35747 * 60.24530 * 18 17 9 21 21 C 1.29449 * 124.07823 * 222.63580 * 20 18 17 22 22 C 1.50071 * 124.07061 * 0.50054 * 21 20 18 23 23 C 1.53023 * 110.14669 * 342.86442 * 22 21 20 24 24 C 1.53026 * 109.35418 * 299.69411 * 18 17 9 25 25 H 0.97002 * 120.00005 * 0.02562 * 1 2 3 26 26 H 1.08006 * 120.07641 * 359.97438 * 12 11 10 27 27 H 1.08001 * 119.62195 * 179.72324 * 13 12 11 28 28 H 1.07996 * 119.71506 * 179.97438 * 14 13 12 29 29 H 1.08001 * 120.11247 * 180.02562 * 15 14 13 30 30 H 1.08001 * 117.96334 * 42.66457 * 20 18 17 31 31 H 1.07997 * 117.96189 * 180.51334 * 21 20 18 32 32 H 1.08998 * 109.35607 * 103.07494 * 22 21 20 33 33 H 1.09000 * 109.35203 * 222.65959 * 22 21 20 34 34 H 1.09001 * 109.64184 * 169.12466 * 23 22 21 35 35 H 1.09004 * 109.64195 * 289.54105 * 23 22 21 36 36 H 1.08997 * 109.64102 * 289.32468 * 24 18 17 37 37 H 1.08997 * 109.64446 * 49.96163 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2399 1.6177 0.0000 4 1 3.0936 1.6963 -1.2125 5 1 1.2749 2.7465 -0.0006 6 1 3.0936 1.6964 1.2125 7 6 2.0075 -1.2155 -0.0005 8 1 3.0876 -1.2155 -0.0001 9 6 1.3066 -2.4296 -0.0005 10 7 -0.0124 -2.5520 -0.0007 11 6 -0.3474 -3.8491 -0.0012 12 6 -1.5798 -4.5245 -0.0011 13 6 -1.6066 -5.8878 -0.0023 14 6 -0.4260 -6.6223 -0.0041 15 6 0.7973 -5.9844 -0.0042 16 6 0.8511 -4.5983 -0.0031 17 7 1.8825 -3.6820 -0.0015 18 6 3.3163 -3.9827 -0.0019 19 1 3.4589 -5.0633 -0.0023 20 6 3.9474 -3.3980 1.2277 21 6 5.0835 -2.7777 1.2348 22 6 5.9232 -2.5470 0.0125 23 6 5.4828 -3.4845 -1.1139 24 6 3.9594 -3.3858 -1.2556 25 1 -0.4850 0.8401 -0.0004 26 1 -2.5036 -3.9650 -0.0002 27 1 -2.5558 -6.4030 0.0023 28 1 -0.4670 -7.7015 -0.0046 29 1 1.7097 -6.5623 -0.0061 30 1 3.4212 -3.5017 2.1651 31 1 5.4500 -2.4029 2.1791 32 1 5.8107 -1.5130 -0.3132 33 1 6.9695 -2.7366 0.2521 34 1 5.9584 -3.1840 -2.0476 35 1 5.7673 -4.5083 -0.8709 36 1 3.6384 -3.9457 -2.1340 37 1 3.6660 -2.3409 -1.3559 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123741552.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:34 Heat of formation + Delta-G solvation = 74.384547 kcal Electronic energy + Delta-G solvation = -20387.098032 eV Core-core repulsion = 17515.502917 eV Total energy + Delta-G solvation = -2871.595115 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.53544 -38.04502 -35.87755 -33.56333 -32.50153 -30.75910 -29.81571 -28.66854 -27.68859 -25.83038 -23.05299 -21.99373 -21.33018 -20.67792 -19.51831 -17.49534 -17.13430 -16.18608 -16.02671 -15.24750 -14.81357 -14.17087 -14.00590 -13.70813 -13.21890 -12.86564 -12.69189 -12.62073 -12.45007 -12.29452 -11.97366 -11.58874 -11.37991 -11.16201 -10.86978 -10.67700 -10.58985 -10.37508 -10.19932 -10.14134 -9.93875 -9.30490 -8.99471 -8.70555 -7.86824 -7.20034 -6.83318 -6.65369 -4.58658 2.27733 2.55228 2.73631 3.00389 3.01952 3.03355 3.80522 4.10540 4.15063 4.89282 5.02624 5.07305 5.22758 5.43985 5.53027 5.57443 5.67009 5.69512 5.78204 5.87612 5.88603 6.01722 6.06145 6.16161 6.21670 6.40690 6.53956 6.56353 6.65243 6.78053 6.89956 6.92276 7.04651 7.19390 7.30357 7.51911 7.63531 7.78381 7.93682 8.03261 8.35412 8.66751 9.06193 9.98536 10.23810 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.014400 B = 0.009359 C = 0.006056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.943212 B = 2991.072439 C = 4622.704146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.716 5.716 2 C 0.077 3.923 3 Si 0.912 3.088 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.435 4.435 8 H 0.092 0.908 9 C 0.425 3.575 10 N -0.538 5.538 11 C 0.110 3.890 12 C -0.130 4.130 13 C -0.124 4.124 14 C -0.183 4.183 15 C -0.104 4.104 16 C -0.005 4.005 17 N -0.533 5.533 18 C 0.196 3.804 19 H 0.083 0.917 20 C -0.142 4.142 21 C -0.151 4.151 22 C -0.090 4.090 23 C -0.114 4.114 24 C -0.138 4.138 25 H 0.279 0.721 26 H 0.107 0.893 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.675 -3.797 -0.357 9.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.338 5.338 2 C -0.151 4.151 3 Si 0.735 3.265 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.472 4.472 8 H 0.110 0.890 9 C 0.189 3.811 10 N -0.262 5.262 11 C -0.018 4.018 12 C -0.152 4.152 13 C -0.144 4.144 14 C -0.204 4.204 15 C -0.126 4.126 16 C -0.113 4.113 17 N -0.229 5.229 18 C 0.091 3.909 19 H 0.101 0.899 20 C -0.161 4.161 21 C -0.170 4.170 22 C -0.127 4.127 23 C -0.152 4.152 24 C -0.177 4.177 25 H 0.090 0.910 26 H 0.125 0.875 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.112 0.888 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.024 -2.996 -0.352 8.572 hybrid contribution 0.915 0.000 0.169 0.931 sum 8.939 -2.996 -0.182 9.430 Atomic orbital electron populations 1.69974 1.07156 1.28573 1.28124 1.25881 0.94867 1.00734 0.93596 0.86308 0.80019 0.80200 0.79944 1.18801 1.20010 1.18812 1.18589 0.94167 0.87234 1.47217 0.88974 1.20382 0.86999 0.83523 0.90238 1.71402 1.09211 1.12785 1.32756 1.19571 0.91991 0.91547 0.98662 1.19768 0.95012 0.93171 1.07219 1.20204 0.96889 0.93522 1.03820 1.20269 0.91866 0.97725 1.10507 1.19583 0.97032 0.90314 1.05651 1.18910 0.89917 0.91497 1.10939 1.45613 1.03157 1.06255 1.67860 1.19550 0.79283 0.98683 0.93358 0.89892 1.22244 0.95893 0.99333 0.98613 1.21912 0.96850 0.99676 0.98593 1.20457 0.98307 1.00258 0.93681 1.21555 0.95704 0.99531 0.98387 1.22095 0.94434 1.04326 0.96799 0.91012 0.87480 0.87891 0.87925 0.88759 0.87962 0.88013 0.90684 0.91553 0.91610 0.92118 0.91929 0.88703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.04 11.85 55.57 0.66 -18.38 16 2 C 0.08 1.89 5.50 -17.29 -0.10 1.79 16 3 Si 0.91 17.98 29.56 -169.99 -5.03 12.95 16 4 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 5 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.43 -10.95 7.67 -38.06 -0.29 -11.24 16 8 H 0.09 2.13 5.31 -52.48 -0.28 1.85 16 9 C 0.42 11.34 6.99 -155.68 -1.09 10.25 16 10 N -0.54 -15.53 9.33 -10.31 -0.10 -15.63 16 11 C 0.11 2.92 7.21 -84.89 -0.61 2.30 16 12 C -0.13 -3.04 10.07 -39.40 -0.40 -3.43 16 13 C -0.12 -2.48 9.96 -39.96 -0.40 -2.88 16 14 C -0.18 -3.56 10.04 -39.38 -0.40 -3.96 16 15 C -0.10 -2.18 9.88 -39.51 -0.39 -2.57 16 16 C -0.01 -0.13 6.88 -83.75 -0.58 -0.70 16 17 N -0.53 -12.53 2.68 -107.95 -0.29 -12.82 16 18 C 0.20 3.67 2.96 -69.37 -0.21 3.47 16 19 H 0.08 1.45 7.60 -51.93 -0.39 1.06 16 20 C -0.14 -2.50 7.89 -35.90 -0.28 -2.78 16 21 C -0.15 -2.27 9.60 -35.90 -0.34 -2.62 16 22 C -0.09 -1.17 6.11 -28.18 -0.17 -1.34 16 23 C -0.11 -1.49 6.01 -26.55 -0.16 -1.65 16 24 C -0.14 -2.35 5.31 -26.55 -0.14 -2.49 16 25 H 0.28 6.72 8.29 -40.82 -0.34 6.39 16 26 H 0.11 2.38 8.06 -52.48 -0.42 1.96 16 27 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16 28 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 29 H 0.09 1.73 7.74 -52.49 -0.41 1.33 16 30 H 0.10 1.93 8.06 -52.49 -0.42 1.50 16 31 H 0.10 1.38 8.06 -52.49 -0.42 0.95 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.09 1.84 5.46 -51.93 -0.28 1.55 16 LS Contribution 302.18 15.07 4.55 4.55 Total: -1.00 -29.72 302.18 -10.47 -40.19 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -4.72 Total: 6.98 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -5.55 Total: -17.85 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: 0.27 Total: -46.83 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.72 -10.47 -40.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123741552.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.574 kcal (2) G-P(sol) polarization free energy of solvation -29.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds