Wall clock time and date at job start Mon Mar 30 2020 07:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30588 * 1 3 3 Si 1.86798 * 120.00102 * 2 1 4 4 H 1.48496 * 109.47017 * 239.99919 * 3 2 1 5 5 H 1.48503 * 109.47209 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47167 * 119.99974 * 3 2 1 7 7 C 1.40345 * 119.99559 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99736 * 180.02562 * 7 2 1 9 9 C 1.40191 * 120.00499 * 359.97438 * 7 2 1 10 10 N 1.32460 * 125.30260 * 0.03514 * 9 7 2 11 11 C 1.33969 * 109.78562 * 179.97438 * 10 9 7 12 12 C 1.40532 * 133.20568 * 179.97438 * 11 10 9 13 13 C 1.36355 * 119.85015 * 179.97438 * 12 11 10 14 14 C 1.39046 * 120.76290 * 359.97438 * 13 12 11 15 15 C 1.37961 * 120.56862 * 0.02562 * 14 13 12 16 16 C 1.38717 * 119.76670 * 359.97438 * 15 14 13 17 17 N 1.37849 * 125.30635 * 179.97438 * 9 7 2 18 18 C 1.46505 * 126.53758 * 0.04511 * 17 9 7 19 19 H 1.08995 * 109.35692 * 179.97438 * 18 17 9 20 20 C 1.50063 * 109.35747 * 60.24530 * 18 17 9 21 21 C 1.29449 * 124.07823 * 222.63580 * 20 18 17 22 22 C 1.50071 * 124.07061 * 0.50054 * 21 20 18 23 23 C 1.53023 * 110.14669 * 342.86442 * 22 21 20 24 24 C 1.53026 * 109.35418 * 299.69411 * 18 17 9 25 25 H 0.97002 * 120.00005 * 0.02562 * 1 2 3 26 26 H 1.08006 * 120.07641 * 359.97438 * 12 11 10 27 27 H 1.08001 * 119.62195 * 179.72324 * 13 12 11 28 28 H 1.07996 * 119.71506 * 179.97438 * 14 13 12 29 29 H 1.08001 * 120.11247 * 180.02562 * 15 14 13 30 30 H 1.08001 * 117.96334 * 42.66457 * 20 18 17 31 31 H 1.07997 * 117.96189 * 180.51334 * 21 20 18 32 32 H 1.08998 * 109.35607 * 103.07494 * 22 21 20 33 33 H 1.09000 * 109.35203 * 222.65959 * 22 21 20 34 34 H 1.09001 * 109.64184 * 169.12466 * 23 22 21 35 35 H 1.09004 * 109.64195 * 289.54105 * 23 22 21 36 36 H 1.08997 * 109.64102 * 289.32468 * 24 18 17 37 37 H 1.08997 * 109.64446 * 49.96163 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2399 1.6177 0.0000 4 1 3.0936 1.6963 -1.2125 5 1 1.2749 2.7465 -0.0006 6 1 3.0936 1.6964 1.2125 7 6 2.0075 -1.2155 -0.0005 8 1 3.0876 -1.2155 -0.0001 9 6 1.3066 -2.4296 -0.0005 10 7 -0.0124 -2.5520 -0.0007 11 6 -0.3474 -3.8491 -0.0012 12 6 -1.5798 -4.5245 -0.0011 13 6 -1.6066 -5.8878 -0.0023 14 6 -0.4260 -6.6223 -0.0041 15 6 0.7973 -5.9844 -0.0042 16 6 0.8511 -4.5983 -0.0031 17 7 1.8825 -3.6820 -0.0015 18 6 3.3163 -3.9827 -0.0019 19 1 3.4589 -5.0633 -0.0023 20 6 3.9474 -3.3980 1.2277 21 6 5.0835 -2.7777 1.2348 22 6 5.9232 -2.5470 0.0125 23 6 5.4828 -3.4845 -1.1139 24 6 3.9594 -3.3858 -1.2556 25 1 -0.4850 0.8401 -0.0004 26 1 -2.5036 -3.9650 -0.0002 27 1 -2.5558 -6.4030 0.0023 28 1 -0.4670 -7.7015 -0.0046 29 1 1.7097 -6.5623 -0.0061 30 1 3.4212 -3.5017 2.1651 31 1 5.4500 -2.4029 2.1791 32 1 5.8107 -1.5130 -0.3132 33 1 6.9695 -2.7366 0.2521 34 1 5.9584 -3.1840 -2.0476 35 1 5.7673 -4.5083 -0.8709 36 1 3.6384 -3.9457 -2.1340 37 1 3.6660 -2.3409 -1.3559 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123741552.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:34 Heat of formation + Delta-G solvation = 59.213645 kcal Electronic energy + Delta-G solvation = -20387.755892 eV Core-core repulsion = 17515.502917 eV Total energy + Delta-G solvation = -2872.252975 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.27658 -39.39610 -37.54839 -35.36801 -34.13046 -31.98727 -31.40600 -30.47539 -29.24555 -27.64515 -24.43175 -23.24947 -23.08386 -22.40887 -21.19648 -18.96977 -18.78744 -17.76677 -17.64658 -16.67806 -16.48369 -15.77181 -15.65152 -14.94886 -14.79010 -14.49332 -14.38247 -14.11515 -13.74870 -13.58259 -13.34111 -13.16891 -12.98478 -12.71489 -12.39867 -12.26595 -12.11869 -11.98527 -11.65563 -11.54314 -11.34842 -10.99523 -10.70816 -10.02852 -9.74861 -8.99603 -8.61129 -8.47440 -6.49691 0.52027 1.00967 1.26624 1.38997 1.45310 1.52860 2.16723 2.36051 2.49370 3.19310 3.63684 3.75686 3.80582 3.93698 4.04622 4.18153 4.28481 4.32495 4.43369 4.47980 4.57904 4.71069 4.73891 4.89742 4.94650 5.00679 5.06049 5.08241 5.20186 5.25225 5.32169 5.45869 5.55821 5.68616 5.74350 5.91589 5.93062 6.06311 6.21506 6.25410 6.56552 6.82472 7.25536 8.11468 8.45072 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.014400 B = 0.009359 C = 0.006056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.943212 B = 2991.072439 C = 4622.704146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.028 3.972 3 Si 0.990 3.010 4 H -0.250 1.250 5 H -0.273 1.273 6 H -0.253 1.253 7 C -0.453 4.453 8 H 0.106 0.894 9 C 0.400 3.600 10 N -0.590 5.590 11 C 0.053 3.947 12 C -0.151 4.151 13 C -0.117 4.117 14 C -0.164 4.164 15 C -0.109 4.109 16 C -0.025 4.025 17 N -0.533 5.533 18 C 0.190 3.810 19 H 0.093 0.907 20 C -0.176 4.176 21 C -0.125 4.125 22 C -0.092 4.092 23 C -0.105 4.105 24 C -0.134 4.134 25 H 0.281 0.719 26 H 0.102 0.898 27 H 0.144 0.856 28 H 0.150 0.850 29 H 0.123 0.877 30 H 0.077 0.923 31 H 0.119 0.881 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.329 -5.150 -0.569 12.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.194 4.194 3 Si 0.809 3.191 4 H -0.174 1.174 5 H -0.197 1.197 6 H -0.177 1.177 7 C -0.490 4.490 8 H 0.124 0.876 9 C 0.161 3.839 10 N -0.315 5.315 11 C -0.072 4.072 12 C -0.172 4.172 13 C -0.137 4.137 14 C -0.185 4.185 15 C -0.131 4.131 16 C -0.133 4.133 17 N -0.227 5.227 18 C 0.088 3.912 19 H 0.111 0.889 20 C -0.195 4.195 21 C -0.144 4.144 22 C -0.129 4.129 23 C -0.143 4.143 24 C -0.172 4.172 25 H 0.091 0.909 26 H 0.120 0.880 27 H 0.161 0.839 28 H 0.167 0.833 29 H 0.141 0.859 30 H 0.095 0.905 31 H 0.137 0.863 32 H 0.095 0.905 33 H 0.121 0.879 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.696 -4.406 -0.565 11.582 hybrid contribution 0.028 0.197 0.251 0.320 sum 10.724 -4.209 -0.315 11.524 Atomic orbital electron populations 1.70136 1.09312 1.29638 1.30276 1.26994 0.95577 1.04562 0.92283 0.85150 0.78569 0.74827 0.80603 1.17395 1.19728 1.17706 1.18963 0.94833 0.87394 1.47848 0.87585 1.20705 0.87059 0.85105 0.91007 1.71255 1.11091 1.14729 1.34452 1.20120 0.94191 0.91615 1.01319 1.20049 0.94033 0.94886 1.08246 1.20653 0.99220 0.92130 1.01675 1.20868 0.90749 0.99989 1.06851 1.20033 0.99147 0.89058 1.04836 1.19364 0.89526 0.92907 1.11516 1.45818 1.04873 1.05187 1.66871 1.19864 0.77005 0.99526 0.94845 0.88945 1.22020 0.97360 1.02946 0.97158 1.22282 0.95511 0.96169 1.00456 1.20589 0.99735 1.00266 0.92310 1.21555 0.92280 1.00733 0.99726 1.22034 0.97497 1.02124 0.95573 0.90856 0.88012 0.83877 0.83279 0.85863 0.90453 0.86293 0.90463 0.87916 0.89373 0.90530 0.92589 0.91478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -43.48 11.85 21.89 0.26 -43.22 16 2 C 0.03 1.44 5.50 85.39 0.47 1.91 16 3 Si 0.99 37.45 29.56 68.60 2.03 39.48 16 4 H -0.25 -8.84 7.11 99.48 0.71 -8.13 16 5 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 6 H -0.25 -9.06 7.11 99.48 0.71 -8.35 16 7 C -0.45 -23.83 7.67 23.26 0.18 -23.66 16 8 H 0.11 5.03 5.31 -2.91 -0.02 5.01 16 9 C 0.40 22.60 6.99 133.69 0.93 23.54 16 10 N -0.59 -36.47 9.33 -186.53 -1.74 -38.21 16 11 C 0.05 2.98 7.21 40.14 0.29 3.27 16 12 C -0.15 -7.24 10.07 22.39 0.23 -7.02 16 13 C -0.12 -4.46 9.96 22.02 0.22 -4.24 16 14 C -0.16 -5.88 10.04 22.40 0.22 -5.65 16 15 C -0.11 -4.42 9.88 22.32 0.22 -4.20 16 16 C -0.03 -1.25 6.88 39.06 0.27 -0.98 16 17 N -0.53 -26.05 2.68 -495.46 -1.33 -27.38 16 18 C 0.19 7.19 2.96 44.05 0.13 7.32 16 19 H 0.09 3.19 7.60 -2.39 -0.02 3.17 16 20 C -0.18 -6.20 7.89 27.03 0.21 -5.99 16 21 C -0.13 -3.51 9.60 27.03 0.26 -3.25 16 22 C -0.09 -2.05 6.11 29.66 0.18 -1.87 16 23 C -0.11 -2.43 6.01 30.71 0.18 -2.24 16 24 C -0.13 -4.49 5.31 30.71 0.16 -4.33 16 25 H 0.28 14.42 8.29 -92.71 -0.77 13.65 16 26 H 0.10 4.79 8.06 -2.91 -0.02 4.77 16 27 H 0.14 4.29 8.06 -2.91 -0.02 4.26 16 28 H 0.15 4.01 8.06 -2.91 -0.02 3.98 16 29 H 0.12 4.20 7.74 -2.91 -0.02 4.17 16 30 H 0.08 3.05 8.06 -2.91 -0.02 3.03 16 31 H 0.12 2.90 8.06 -2.91 -0.02 2.88 16 32 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.08 1.56 8.13 -2.38 -0.02 1.54 16 36 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.07 2.63 5.46 -2.39 -0.01 2.62 16 Total: -1.00 -71.02 302.18 4.45 -66.57 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: 1.07 Total: 30.16 kcal Atomic # 6 Polarization: -31.57 SS G_CDS: 4.16 Total: -27.41 kcal Atomic # 7 Polarization: -106.00 SS G_CDS: -2.81 Total: -108.81 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 2.03 Total: 39.48 kcal Total: -71.02 4.45 -66.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123741552.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.783 kcal (2) G-P(sol) polarization free energy of solvation -71.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds