Wall clock time and date at job start Mon Mar 30 2020 06:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46903 * 109.47084 * 2 1 4 4 C 1.46896 * 111.00393 * 193.95653 * 3 2 1 5 5 C 1.50697 * 109.47356 * 66.04213 * 4 3 2 6 6 H 1.07999 * 119.99775 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00115 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00087 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99845 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46996 * 60.00489 * 9 7 5 11 11 H 1.48502 * 109.46906 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47312 * 299.99966 * 9 7 5 13 13 C 1.40001 * 110.99959 * 69.99637 * 3 2 1 14 14 C 1.38883 * 119.99279 * 63.93386 * 13 3 2 15 15 C 1.38148 * 119.98617 * 180.02562 * 14 13 3 16 16 Cl 1.73608 * 120.01005 * 180.02562 * 15 14 13 17 17 C 1.38977 * 119.98434 * 359.95327 * 15 14 13 18 18 N 1.40083 * 120.00660 * 180.29844 * 17 15 14 19 19 C 1.38795 * 119.99168 * 0.02787 * 17 15 14 20 20 C 1.38141 * 120.01108 * 0.02562 * 19 17 15 21 21 C 1.50705 * 119.99137 * 179.97438 * 20 19 17 22 22 H 1.08997 * 109.47254 * 59.99848 * 1 2 3 23 23 H 1.09003 * 109.46601 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47380 * 299.99728 * 1 2 3 25 25 H 1.08998 * 109.47380 * 240.00272 * 2 1 3 26 26 H 1.08997 * 109.47012 * 119.99658 * 2 1 3 27 27 H 1.08997 * 109.47138 * 186.04825 * 4 3 2 28 28 H 1.09001 * 109.46932 * 306.04677 * 4 3 2 29 29 H 0.97003 * 120.00297 * 179.97438 * 8 7 5 30 30 H 1.08005 * 120.00774 * 0.02562 * 14 13 3 31 31 H 0.97004 * 119.99657 * 179.73169 * 18 17 15 32 32 H 0.97000 * 119.99889 * 359.72335 * 18 17 15 33 33 H 1.07995 * 119.99177 * 179.97438 * 19 17 15 34 34 H 1.09001 * 109.46693 * 90.00380 * 21 20 19 35 35 H 1.09000 * 109.47321 * 209.99816 * 21 20 19 36 36 H 1.08988 * 109.47060 * 330.00650 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4500 1.4378 -0.3308 5 6 3.6535 0.9856 -1.7538 6 1 2.8052 0.6890 -2.3527 7 6 4.9228 0.9504 -2.2911 8 7 5.9559 1.3110 -1.5616 9 14 5.1750 0.3905 -4.0553 10 1 4.4225 1.2853 -4.9709 11 1 6.6211 0.4426 -4.3891 12 1 4.6821 -1.0019 -4.2079 13 6 1.7654 2.0071 1.2282 14 6 2.3710 1.5335 2.3848 15 6 2.1195 2.1471 3.5968 16 17 2.8767 1.5560 5.0429 17 6 1.2614 3.2386 3.6578 18 7 1.0110 3.8650 4.8855 19 6 0.6570 3.7115 2.5014 20 6 0.9077 3.0970 1.2898 21 6 0.2507 3.6105 0.0345 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.8112 2.4601 -0.2191 28 1 4.0028 0.7817 0.3416 29 1 6.8489 1.2859 -1.9394 30 1 3.0384 0.6857 2.3369 31 1 0.4151 4.6293 4.9273 32 1 1.4334 3.5345 5.6937 33 1 -0.0102 4.5594 2.5489 34 1 0.8866 4.3673 -0.4249 35 1 0.1057 2.7857 -0.6632 36 1 -0.7151 4.0498 0.2835 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125841743.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:38 Heat of formation + Delta-G solvation = 14.638033 kcal Electronic energy + Delta-G solvation = -18518.439799 eV Core-core repulsion = 15641.821031 eV Total energy + Delta-G solvation = -2876.618768 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.69661 -37.02733 -35.97881 -33.87211 -32.53940 -31.77312 -30.06680 -28.17663 -26.72978 -25.22485 -22.78656 -22.39393 -21.04688 -19.76294 -17.09803 -16.73491 -16.24989 -15.53082 -14.92640 -14.52566 -14.11115 -14.00526 -13.42613 -13.34628 -13.08614 -12.60355 -12.54774 -12.19660 -12.07109 -11.37710 -11.30109 -11.23849 -11.07317 -10.95249 -10.84687 -10.65643 -10.50226 -10.22488 -10.13445 -9.67728 -9.23921 -8.44331 -8.30408 -7.38257 -7.15020 -6.01836 -4.03918 1.57137 1.82576 2.45964 3.34054 3.38428 3.40885 3.91626 4.01904 4.42497 4.85991 5.07466 5.33432 5.41197 5.59290 5.74576 5.75814 5.92910 6.00954 6.08240 6.16181 6.20667 6.26481 6.40232 6.44974 6.62642 6.68477 6.82473 6.96315 7.12391 7.34582 7.37273 7.52242 7.79461 7.84581 8.11725 8.18524 8.64440 9.02956 9.60033 11.08673 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.021589 B = 0.005630 C = 0.005124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.637345 B = 4971.846035 C = 5463.384435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.059 3.941 3 N -0.496 5.496 4 C 0.200 3.800 5 C -0.509 4.509 6 H 0.064 0.936 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.898 3.102 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.073 3.927 14 C -0.090 4.090 15 C -0.108 4.108 16 Cl -0.090 7.090 17 C 0.212 3.788 18 N -0.880 5.880 19 C -0.188 4.188 20 C -0.016 4.016 21 C -0.104 4.104 22 H 0.058 0.942 23 H 0.047 0.953 24 H 0.045 0.955 25 H 0.088 0.912 26 H 0.022 0.978 27 H 0.031 0.969 28 H -0.006 1.006 29 H 0.262 0.738 30 H 0.129 0.871 31 H 0.396 0.604 32 H 0.397 0.603 33 H 0.125 0.875 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.243 3.264 10.344 15.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.068 4.068 3 N -0.218 5.218 4 C 0.076 3.924 5 C -0.548 4.548 6 H 0.083 0.917 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.024 4.024 14 C -0.111 4.111 15 C -0.139 4.139 16 Cl -0.062 7.062 17 C 0.108 3.892 18 N -0.422 5.422 19 C -0.212 4.212 20 C -0.018 4.018 21 C -0.161 4.161 22 H 0.077 0.923 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.107 0.893 26 H 0.040 0.960 27 H 0.049 0.951 28 H 0.012 0.988 29 H 0.072 0.928 30 H 0.146 0.854 31 H 0.224 0.776 32 H 0.226 0.774 33 H 0.143 0.857 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.201 3.447 10.025 15.422 hybrid contribution 0.919 -0.589 0.289 1.129 sum -10.282 2.858 10.314 14.841 Atomic orbital electron populations 1.21787 0.96470 1.00260 1.01642 1.22056 0.94244 0.89237 1.01219 1.59970 1.21933 1.15784 1.24104 1.19768 0.79365 0.97167 0.96095 1.21097 0.92643 1.43951 0.97084 0.91744 1.24977 0.95960 0.95583 0.97961 1.69954 0.98913 1.48126 1.36609 0.86567 0.76888 0.79188 0.84789 1.20154 1.21417 1.20279 1.18680 0.97884 0.96628 0.89192 1.21515 0.98939 0.99751 0.90929 1.20163 1.04939 1.00891 0.87936 1.98301 1.81463 1.88023 1.38397 1.17362 0.93729 0.91137 0.86970 1.42502 1.55698 1.37289 1.06668 1.20262 1.06471 1.03868 0.90553 1.19705 0.94418 0.93126 0.94507 1.20671 0.98281 1.02056 0.95101 0.92256 0.93379 0.93559 0.89328 0.95990 0.95086 0.98777 0.92842 0.85362 0.77556 0.77409 0.85711 0.91147 0.89632 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.80 37.16 0.36 -1.89 16 2 C 0.06 1.14 5.45 -3.82 -0.02 1.12 16 3 N -0.50 -10.45 3.39 -172.41 -0.59 -11.03 16 4 C 0.20 5.13 4.31 -4.98 -0.02 5.11 16 5 C -0.51 -13.96 8.31 -34.44 -0.29 -14.24 16 6 H 0.06 1.73 7.23 -52.49 -0.38 1.35 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.54 13.29 55.43 0.74 -25.80 16 9 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.07 1.38 3.73 -83.67 -0.31 1.07 16 14 C -0.09 -1.67 8.31 -39.38 -0.33 -2.00 16 15 C -0.11 -1.76 6.33 -39.34 -0.25 -2.01 16 16 Cl -0.09 -1.32 27.58 -51.86 -1.43 -2.75 16 17 C 0.21 3.07 6.76 -83.61 -0.56 2.51 16 18 N -0.88 -9.57 9.06 32.48 0.29 -9.28 16 19 C -0.19 -2.70 9.54 -39.41 -0.38 -3.08 16 20 C -0.02 -0.26 5.90 -104.44 -0.62 -0.88 16 21 C -0.10 -1.55 9.76 36.01 0.35 -1.20 16 22 H 0.06 0.92 7.89 -51.93 -0.41 0.51 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.72 7.52 -51.93 -0.39 0.33 16 25 H 0.09 1.83 6.60 -51.93 -0.34 1.49 16 26 H 0.02 0.42 7.07 -51.93 -0.37 0.05 16 27 H 0.03 0.88 8.06 -51.93 -0.42 0.46 16 28 H -0.01 -0.15 7.48 -51.93 -0.39 -0.54 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.13 2.51 7.14 -52.48 -0.37 2.14 16 31 H 0.40 3.27 8.84 -40.82 -0.36 2.91 16 32 H 0.40 4.07 7.50 -40.82 -0.31 3.76 16 33 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.08 1.38 7.05 -51.93 -0.37 1.01 16 36 H 0.05 0.62 8.08 -51.94 -0.42 0.20 16 LS Contribution 310.94 15.07 4.69 4.69 Total: -1.00 -29.41 310.94 -8.40 -37.81 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -4.93 Total: 3.99 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -2.16 Total: -14.00 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 0.45 Total: -46.11 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -1.43 Total: -2.75 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.41 -8.40 -37.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125841743.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.448 kcal (2) G-P(sol) polarization free energy of solvation -29.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds