Wall clock time and date at job start Mon Mar 30 2020 07:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.33641 * 126.03942 * 90.02170 * 3 2 1 5 5 N 1.31777 * 114.49765 * 180.02562 * 4 3 2 6 6 C 1.29022 * 117.12847 * 359.97438 * 5 4 3 7 7 C 1.50704 * 124.91576 * 180.02562 * 6 5 4 8 8 H 1.09011 * 109.46881 * 164.97638 * 7 6 5 9 9 C 1.52998 * 109.47037 * 284.97532 * 7 6 5 10 10 N 1.46901 * 109.47190 * 44.98057 * 7 6 5 11 11 C 1.46900 * 111.00017 * 154.99878 * 10 7 6 12 12 C 1.52997 * 109.47104 * 179.97438 * 11 10 7 13 13 C 1.52999 * 109.47208 * 179.97438 * 12 11 10 14 14 C 1.50702 * 109.47075 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99992 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99979 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00198 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 120.00113 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.47111 * 89.99686 * 18 16 14 20 20 H 1.48495 * 109.47210 * 209.99787 * 18 16 14 21 21 H 1.48505 * 109.46909 * 329.99801 * 18 16 14 22 22 S 1.70982 * 110.16535 * 359.72804 * 6 5 4 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 28 28 H 1.07997 * 122.74954 * 0.02562 * 4 3 2 29 29 H 1.09001 * 109.47401 * 299.99851 * 9 7 6 30 30 H 1.08997 * 109.47176 * 60.00296 * 9 7 6 31 31 H 1.09008 * 109.46732 * 180.02562 * 9 7 6 32 32 H 1.00899 * 111.00123 * 31.04331 * 10 7 6 33 33 H 1.09002 * 109.47274 * 299.99676 * 11 10 7 34 34 H 1.09006 * 109.47025 * 59.99844 * 11 10 7 35 35 H 1.09002 * 109.47096 * 300.00158 * 12 11 10 36 36 H 1.09001 * 109.46930 * 59.99749 * 12 11 10 37 37 H 1.08994 * 109.47232 * 300.00483 * 13 12 11 38 38 H 1.09006 * 109.46807 * 60.00288 * 13 12 11 39 39 H 0.97003 * 120.00517 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2948 2.1620 1.0806 5 7 2.7246 3.3795 0.8170 6 6 2.8398 3.7065 -0.4258 7 6 3.3137 5.0473 -0.9246 8 1 3.5693 4.9721 -1.9817 9 6 2.2015 6.0818 -0.7412 10 7 4.4991 5.4623 -0.1626 11 6 5.3250 6.3953 -0.9405 12 6 6.5469 6.8044 -0.1156 13 6 7.4074 7.7757 -0.9261 14 6 8.6106 8.1792 -0.1133 15 1 8.7480 7.7822 0.8817 16 6 9.5360 9.0551 -0.6399 17 7 10.5863 9.4069 0.0692 18 14 9.2981 9.7423 -2.3606 19 1 8.5161 11.0026 -2.2866 20 1 10.6234 10.0173 -2.9714 21 1 8.5657 8.7533 -3.1916 22 16 2.3849 2.3956 -1.4248 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 2.1653 1.7934 2.0874 29 1 1.3220 5.7739 -1.3067 30 1 1.9459 6.1570 0.3157 31 1 2.5442 7.0515 -1.1025 32 1 5.0379 4.6618 0.1322 33 1 5.6529 5.9104 -1.8601 34 1 4.7393 7.2813 -1.1858 35 1 6.2187 7.2894 0.8037 36 1 7.1326 5.9186 0.1300 37 1 7.7355 7.2904 -1.8452 38 1 6.8219 8.6616 -1.1721 39 1 11.2372 10.0234 -0.3011 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126034570.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:47 Heat of formation + Delta-G solvation = 20.504283 kcal Electronic energy + Delta-G solvation = -17426.211460 eV Core-core repulsion = 14687.723873 eV Total energy + Delta-G solvation = -2738.487587 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.02710 -37.14253 -34.75262 -33.76497 -32.04596 -29.95579 -28.66293 -26.48670 -25.64762 -23.36292 -22.56102 -21.58592 -20.17920 -18.93978 -18.28786 -16.71304 -16.05895 -15.42545 -15.17007 -14.74810 -14.46708 -14.19953 -14.17964 -13.89980 -13.36951 -12.76892 -12.63177 -12.51842 -12.20891 -12.02386 -11.96942 -11.84136 -11.63520 -11.28983 -11.20673 -10.91067 -10.74288 -9.93778 -9.77001 -9.67698 -9.53613 -9.43642 -9.14169 -8.97198 -8.50197 -8.26833 -6.00300 -3.97926 0.47874 1.09143 1.52723 2.67969 3.33043 3.40003 3.43551 3.91487 4.29344 4.43366 4.48315 4.60080 4.75692 4.84308 5.12664 5.13964 5.20745 5.28978 5.33464 5.42454 5.60330 5.63258 5.68304 5.74177 5.75791 5.83417 5.98557 6.16101 6.27545 6.57454 6.59381 6.94919 7.16666 7.37727 7.45875 7.55142 7.63832 7.84052 8.59229 9.05640 9.62211 11.13318 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.042528 B = 0.002991 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.238587 B = 9360.442215 C = 9518.308586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.045 4.045 3 C -0.223 4.223 4 C 0.036 3.964 5 N -0.446 5.446 6 C 0.048 3.952 7 C 0.163 3.837 8 H 0.060 0.940 9 C -0.133 4.133 10 N -0.669 5.669 11 C 0.055 3.945 12 C -0.098 4.098 13 C -0.012 4.012 14 C -0.518 4.518 15 H 0.072 0.928 16 C 0.064 3.936 17 N -0.905 5.905 18 Si 0.881 3.119 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.266 1.266 22 S 0.108 5.892 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.174 0.826 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.344 0.656 33 H 0.025 0.975 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.013 0.987 38 H 0.012 0.988 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.034 -18.391 -3.859 28.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.085 4.085 3 C -0.344 4.344 4 C -0.115 4.115 5 N -0.159 5.159 6 C -0.230 4.230 7 C 0.049 3.951 8 H 0.077 0.923 9 C -0.192 4.192 10 N -0.302 5.302 11 C -0.074 4.074 12 C -0.136 4.136 13 C -0.050 4.050 14 C -0.556 4.556 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.544 5.544 18 Si 0.708 3.292 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.191 1.191 22 S 0.364 5.636 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.103 0.897 27 H 0.093 0.907 28 H 0.191 0.809 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.163 0.837 33 H 0.043 0.957 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.031 0.969 38 H 0.030 0.970 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -22.099 -17.538 -4.209 28.525 hybrid contribution 0.350 -0.478 -0.614 0.853 sum -21.749 -18.015 -4.822 28.650 Atomic orbital electron populations 1.21802 0.94189 1.02095 1.02520 1.19984 0.96148 0.88870 1.03476 1.26019 1.10837 1.02510 0.95023 1.21790 1.00891 0.88791 1.00049 1.66219 1.14490 1.16794 1.18407 1.27208 1.03848 1.00569 0.91407 1.20144 0.93241 0.86591 0.95090 0.92264 1.21781 0.96003 0.98094 1.03344 1.60596 1.08622 1.19961 1.40988 1.22284 0.94869 0.95450 0.94776 1.21432 0.93427 0.99720 0.99069 1.19543 0.95314 0.94266 0.95913 1.21157 1.04999 1.26670 1.02776 0.91010 1.25048 0.95006 0.96090 0.97506 1.69920 1.12138 1.34854 1.37501 0.86762 0.77357 0.79726 0.85318 1.20291 1.21469 1.19093 1.83987 1.61072 1.06717 1.11828 0.91866 0.92514 0.92208 0.89664 0.90666 0.80943 0.92825 0.91022 0.91303 0.83691 0.95686 0.91127 0.91756 0.93034 0.96874 0.97010 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.89 37.16 0.37 -0.45 16 2 C -0.04 -0.28 6.47 -27.88 -0.18 -0.46 16 3 C -0.22 -2.05 5.85 -35.92 -0.21 -2.26 16 4 C 0.04 0.39 11.25 -19.19 -0.22 0.17 16 5 N -0.45 -5.94 10.50 -11.86 -0.12 -6.06 16 6 C 0.05 0.59 5.90 -13.46 -0.08 0.51 16 7 C 0.16 2.05 3.11 -68.86 -0.21 1.84 16 8 H 0.06 0.69 7.80 -51.92 -0.40 0.29 16 9 C -0.13 -1.55 9.40 37.16 0.35 -1.20 16 10 N -0.67 -10.03 6.27 -107.94 -0.68 -10.71 16 11 C 0.05 0.90 5.48 -3.83 -0.02 0.88 16 12 C -0.10 -2.00 5.41 -26.73 -0.14 -2.15 16 13 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 14 C -0.52 -15.13 9.66 -34.44 -0.33 -15.46 16 15 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 16 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 17 N -0.90 -28.44 13.96 55.43 0.77 -27.67 16 18 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 22 S 0.11 1.07 23.18 -107.50 -2.49 -1.42 16 23 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.17 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 0.79 7.45 -51.92 -0.39 0.41 16 32 H 0.34 5.25 8.35 -39.29 -0.33 4.92 16 33 H 0.02 0.40 8.06 -51.93 -0.42 -0.02 16 34 H 0.07 1.13 7.44 -51.93 -0.39 0.74 16 35 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 38 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 39 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 335.58 15.07 5.06 5.06 Total: -1.00 -31.93 335.58 -9.53 -41.46 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -6.51 Total: -0.83 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: -0.89 Total: -17.19 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: -0.03 Total: -44.44 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.49 Total: -1.42 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.93 -9.53 -41.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126034570.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.959 kcal (2) G-P(sol) polarization free energy of solvation -31.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds