Wall clock time and date at job start Mon Mar 30 2020 07:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.47114 * 2 1 4 4 C 1.33639 * 126.04017 * 90.02744 * 3 2 1 5 5 N 1.31776 * 114.49979 * 179.97438 * 4 3 2 6 6 C 1.29034 * 117.12603 * 359.97438 * 5 4 3 7 7 C 1.50695 * 124.91330 * 179.73408 * 6 5 4 8 8 H 1.09007 * 109.46828 * 195.02474 * 7 6 5 9 9 C 1.52997 * 109.47511 * 75.02768 * 7 6 5 10 10 N 1.46897 * 109.47375 * 315.02429 * 7 6 5 11 11 C 1.46903 * 110.99990 * 205.00289 * 10 7 6 12 12 C 1.53008 * 109.47041 * 179.97438 * 11 10 7 13 13 C 1.53003 * 109.46979 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47028 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99676 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99962 * 179.97438 * 14 13 12 17 17 N 1.31509 * 119.99833 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99897 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47024 * 60.00184 * 18 16 14 20 20 H 1.48496 * 109.46876 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47371 * 300.00325 * 18 16 14 22 22 S 1.70972 * 110.16603 * 0.02562 * 6 5 4 23 23 H 1.09000 * 109.46965 * 300.00438 * 1 2 3 24 24 H 1.09000 * 109.47007 * 60.00107 * 1 2 3 25 25 H 1.08997 * 109.47058 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46965 * 239.99562 * 2 1 3 27 27 H 1.09000 * 109.47007 * 119.99893 * 2 1 3 28 28 H 1.07996 * 122.74983 * 359.95092 * 4 3 2 29 29 H 1.08999 * 109.47633 * 59.99223 * 9 7 6 30 30 H 1.08999 * 109.47866 * 180.02562 * 9 7 6 31 31 H 1.09007 * 109.46834 * 299.99702 * 9 7 6 32 32 H 1.00903 * 110.99854 * 328.95109 * 10 7 6 33 33 H 1.08994 * 109.47312 * 299.99898 * 11 10 7 34 34 H 1.09004 * 109.47186 * 60.00053 * 11 10 7 35 35 H 1.08994 * 109.47080 * 300.00158 * 12 11 10 36 36 H 1.08997 * 109.46913 * 60.00420 * 12 11 10 37 37 H 1.09002 * 109.47026 * 300.00077 * 13 12 11 38 38 H 1.09000 * 109.47122 * 59.99697 * 13 12 11 39 39 H 0.97002 * 119.99555 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2950 2.1620 1.0806 5 7 2.7257 3.3791 0.8170 6 6 2.8416 3.7058 -0.4259 7 6 3.3107 5.0483 -0.9247 8 1 3.0653 5.1490 -1.9820 9 6 4.8253 5.1603 -0.7398 10 7 2.6444 6.1136 -0.1637 11 6 2.5840 7.3579 -0.9422 12 6 1.8843 8.4412 -0.1188 13 6 1.8220 9.7373 -0.9294 14 6 1.1335 10.8045 -0.1182 15 1 0.7765 10.5808 0.8762 16 6 0.9603 12.0668 -0.6451 17 7 1.3955 12.3393 -1.8558 18 14 0.1061 13.3894 0.3601 19 1 0.8653 13.6253 1.6145 20 1 0.0469 14.6477 -0.4261 21 1 -1.2721 12.9467 0.6915 22 16 2.3783 2.3979 -1.4249 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.1644 1.7937 2.0874 29 1 5.3198 4.3699 -1.3044 30 1 5.1646 6.1315 -1.1001 31 1 5.0707 5.0596 0.3175 32 1 1.7230 5.8259 0.1302 33 1 3.5952 7.6830 -1.1866 34 1 2.0259 7.1841 -1.8623 35 1 0.8731 8.1158 0.1252 36 1 2.4421 8.6151 0.8014 37 1 2.8335 10.0625 -1.1730 38 1 1.2646 9.5638 -1.8499 39 1 1.2739 13.2275 -2.2264 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126034782.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:50 Heat of formation + Delta-G solvation = -2.730430 kcal Electronic energy + Delta-G solvation = -17404.740302 eV Core-core repulsion = 14665.245182 eV Total energy + Delta-G solvation = -2739.495120 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.86150 -38.27230 -35.96563 -35.04880 -33.71124 -31.13638 -29.41783 -27.85395 -26.60430 -24.54124 -23.86919 -22.61674 -21.99288 -19.83009 -19.11126 -18.45419 -17.11905 -16.56393 -16.37978 -15.93630 -15.79000 -15.44776 -14.94806 -14.66766 -14.45028 -14.34395 -13.74650 -13.61303 -13.45324 -13.04037 -12.90602 -12.75118 -12.64436 -12.51019 -12.41516 -12.29674 -12.21248 -11.75691 -11.52590 -11.39754 -11.14699 -10.54618 -10.52784 -10.22042 -9.75690 -9.43384 -8.20002 -6.30846 -0.31959 0.31720 0.73875 1.39765 1.43094 1.51044 1.85517 2.41231 3.06305 3.12969 3.18225 3.83414 3.87013 4.11876 4.16302 4.24221 4.30366 4.38561 4.43402 4.56305 4.68619 4.73393 4.77570 4.89167 4.97104 5.02161 5.09933 5.13457 5.19852 5.23198 5.31588 5.35087 5.51838 5.75180 5.85977 5.98617 6.26979 6.33167 6.82123 6.85538 7.38112 8.91741 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.032796 B = 0.002979 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.545987 B = 9397.869064 C = 9763.306366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.044 4.044 3 C -0.210 4.210 4 C 0.013 3.987 5 N -0.475 5.475 6 C 0.023 3.977 7 C 0.161 3.839 8 H 0.069 0.931 9 C -0.128 4.128 10 N -0.674 5.674 11 C 0.071 3.929 12 C -0.091 4.091 13 C 0.027 3.973 14 C -0.546 4.546 15 H 0.057 0.943 16 C 0.000 4.000 17 N -0.933 5.933 18 Si 0.965 3.035 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.267 1.267 22 S 0.138 5.862 23 H 0.053 0.947 24 H 0.047 0.953 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.102 0.898 28 H 0.189 0.811 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.341 0.659 33 H 0.071 0.929 34 H 0.028 0.972 35 H 0.046 0.954 36 H 0.051 0.949 37 H -0.006 1.006 38 H -0.007 1.007 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.762 -27.531 1.042 27.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.084 4.084 3 C -0.331 4.331 4 C -0.137 4.137 5 N -0.189 5.189 6 C -0.255 4.255 7 C 0.048 3.952 8 H 0.087 0.913 9 C -0.187 4.187 10 N -0.306 5.306 11 C -0.058 4.058 12 C -0.129 4.129 13 C -0.010 4.010 14 C -0.584 4.584 15 H 0.075 0.925 16 C -0.198 4.198 17 N -0.573 5.573 18 Si 0.789 3.211 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.192 1.192 22 S 0.393 5.607 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.100 0.900 26 H 0.105 0.895 27 H 0.121 0.879 28 H 0.206 0.794 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.159 0.841 33 H 0.089 0.911 34 H 0.046 0.954 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.012 0.988 38 H 0.011 0.989 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.439 -26.965 0.568 27.081 hybrid contribution -1.126 0.646 0.543 1.407 sum 1.313 -26.319 1.111 26.375 Atomic orbital electron populations 1.21804 0.93750 1.03101 1.01910 1.20149 0.96367 0.87068 1.04843 1.26459 1.08791 1.03578 0.94265 1.22066 1.01975 0.88340 1.01312 1.66198 1.15278 1.18162 1.19279 1.27030 1.04870 1.01680 0.91931 1.20172 0.96489 0.83252 0.95285 0.91306 1.21739 0.91965 1.02480 1.02553 1.60547 1.25819 1.02832 1.41452 1.21964 1.00422 0.89151 0.94214 1.21357 0.98841 0.94215 0.98534 1.18951 0.95084 0.92371 0.94636 1.21675 1.37982 0.96869 1.01836 0.92460 1.25973 0.96442 1.01190 0.96186 1.70083 1.47953 1.22184 1.17079 0.85508 0.79211 0.77762 0.78623 1.19266 1.20620 1.19197 1.83841 1.59730 1.05810 1.11289 0.92763 0.93350 0.90035 0.89501 0.87948 0.79393 0.90787 0.91585 0.92606 0.84066 0.91085 0.95352 0.93519 0.93046 0.98754 0.98887 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.90 71.98 0.71 -0.77 16 2 C -0.04 -0.46 6.47 29.85 0.19 -0.26 16 3 C -0.21 -3.57 5.85 24.64 0.14 -3.42 16 4 C 0.01 0.28 11.25 83.66 0.94 1.22 16 5 N -0.48 -12.70 10.50 -191.46 -2.01 -14.71 16 6 C 0.02 0.56 5.90 88.52 0.52 1.08 16 7 C 0.16 4.18 3.11 44.17 0.14 4.32 16 8 H 0.07 1.66 7.80 -2.38 -0.02 1.64 16 9 C -0.13 -3.10 9.40 71.98 0.68 -2.42 16 10 N -0.67 -21.12 6.27 -495.44 -3.11 -24.23 16 11 C 0.07 2.52 5.48 86.31 0.47 3.00 16 12 C -0.09 -3.95 5.41 30.60 0.17 -3.79 16 13 C 0.03 1.47 4.97 29.85 0.15 1.62 16 14 C -0.55 -32.07 9.11 25.60 0.23 -31.83 16 15 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 16 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 17 N -0.93 -57.66 13.29 21.45 0.28 -57.37 16 18 Si 0.96 45.20 29.54 68.60 2.03 47.22 16 19 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 S 0.14 2.60 23.18 -56.49 -1.31 1.30 16 23 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.19 3.04 8.06 -2.91 -0.02 3.01 16 29 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.07 1.61 7.45 -2.39 -0.02 1.59 16 31 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.34 10.81 8.35 -89.69 -0.75 10.06 16 33 H 0.07 2.51 7.43 -2.39 -0.02 2.49 16 34 H 0.03 0.98 8.06 -2.38 -0.02 0.96 16 35 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 37 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 38 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 39 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -67.36 339.17 0.96 -66.40 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.27 Total: 12.20 kcal Atomic # 6 Polarization: -35.62 SS G_CDS: 4.81 Total: -30.82 kcal Atomic # 7 Polarization: -91.47 SS G_CDS: -4.83 Total: -96.30 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -1.31 Total: 1.30 kcal Total: -67.36 0.96 -66.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126034782.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.673 kcal (2) G-P(sol) polarization free energy of solvation -67.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds