Wall clock time and date at job start Mon Mar 30 2020 07:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47083 * 2 1 4 4 C 1.33643 * 126.04133 * 89.69173 * 3 2 1 5 5 N 1.31783 * 114.49899 * 179.78601 * 4 3 2 6 6 C 1.29022 * 117.12400 * 0.51675 * 5 4 3 7 7 C 1.50699 * 124.91085 * 179.75146 * 6 5 4 8 8 H 1.09001 * 109.47028 * 194.95781 * 7 6 5 9 9 C 1.52995 * 109.47276 * 74.95968 * 7 6 5 10 10 N 1.46900 * 109.47391 * 314.95793 * 7 6 5 11 11 C 1.46898 * 111.00068 * 206.19220 * 10 7 6 12 12 H 1.08997 * 109.47238 * 326.00475 * 11 10 7 13 13 C 1.50704 * 109.47274 * 86.00844 * 11 10 7 14 14 H 1.08006 * 119.99653 * 2.64140 * 13 11 10 15 15 C 1.37876 * 120.00119 * 182.65270 * 13 11 10 16 16 N 1.31517 * 119.99647 * 194.09880 * 15 13 11 17 17 Si 1.86800 * 120.00076 * 14.09421 * 15 13 11 18 18 H 1.48492 * 109.47384 * 94.85595 * 17 15 13 19 19 H 1.48506 * 109.46826 * 214.85719 * 17 15 13 20 20 H 1.48502 * 109.46930 * 334.85426 * 17 15 13 21 21 C 1.53001 * 109.47291 * 206.00381 * 11 10 7 22 22 C 1.53000 * 109.46836 * 65.70455 * 21 11 10 23 23 S 1.70975 * 110.17171 * 359.71741 * 6 5 4 24 24 H 1.08998 * 109.47742 * 300.00585 * 1 2 3 25 25 H 1.08997 * 109.47319 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.46397 * 60.00326 * 1 2 3 27 27 H 1.09000 * 109.46937 * 119.99794 * 2 1 3 28 28 H 1.08996 * 109.47310 * 239.99706 * 2 1 3 29 29 H 1.08000 * 122.74132 * 359.97113 * 4 3 2 30 30 H 1.09006 * 109.47275 * 175.10773 * 9 7 6 31 31 H 1.09000 * 109.47359 * 295.11243 * 9 7 6 32 32 H 1.08999 * 109.47425 * 55.11435 * 9 7 6 33 33 H 1.00899 * 111.00314 * 82.23759 * 10 7 6 34 34 H 0.97002 * 119.99742 * 179.97438 * 16 15 13 35 35 H 1.08997 * 109.47276 * 185.70177 * 21 11 10 36 36 H 1.08994 * 109.47196 * 305.70962 * 21 11 10 37 37 H 1.09000 * 109.47440 * 183.15385 * 22 21 11 38 38 H 1.08999 * 109.47128 * 303.15850 * 22 21 11 39 39 H 1.08997 * 109.47238 * 63.15737 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2889 2.1641 1.0806 5 7 2.7249 3.3794 0.8170 6 6 2.8405 3.7062 -0.4258 7 6 3.3153 5.0466 -0.9246 8 1 3.0700 5.1487 -1.9817 9 6 4.8305 5.1519 -0.7403 10 7 2.6541 6.1148 -0.1631 11 6 2.5737 7.3514 -0.9520 12 1 3.4556 7.4352 -1.5870 13 6 1.3366 7.3192 -1.8119 14 1 0.6538 6.4850 -1.7448 15 6 1.0765 8.3544 -2.6846 16 7 -0.1161 8.4740 -3.2262 17 14 2.4177 9.5873 -3.0975 18 1 3.1037 9.1724 -4.3474 19 1 1.8139 10.9308 -3.2868 20 1 3.4017 9.6389 -1.9865 21 6 2.5081 8.5545 -0.0090 22 6 3.8240 8.6697 0.7630 23 16 2.3780 2.3980 -1.4249 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3632 0.5138 -0.8901 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 2.1531 1.7975 2.0874 30 1 5.1861 6.0840 -1.1795 31 1 5.0691 5.1370 0.3231 32 1 5.3159 4.3096 -1.2334 33 1 3.1232 6.2762 0.7154 34 1 -0.2992 9.2025 -3.8399 35 1 2.3468 9.4628 -0.5896 36 1 1.6853 8.4212 0.6933 37 1 3.7568 9.4925 1.4748 38 1 4.0132 7.7398 1.2992 39 1 4.6394 8.8589 0.0649 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126065952.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:03 Heat of formation + Delta-G solvation = 33.106361 kcal Electronic energy + Delta-G solvation = -18524.504783 eV Core-core repulsion = 15786.563663 eV Total energy + Delta-G solvation = -2737.941120 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.48060 -37.11776 -34.48633 -33.19101 -31.89565 -29.18093 -28.17439 -26.62565 -25.41660 -23.03742 -22.57723 -21.60935 -19.84934 -18.51652 -17.74542 -16.72587 -15.50650 -15.03260 -14.81396 -14.19492 -14.13301 -14.08359 -13.52089 -13.36401 -13.04293 -12.74625 -12.64581 -12.10286 -12.01626 -11.83745 -11.67975 -11.58455 -11.38658 -11.01018 -10.84250 -10.76295 -10.47331 -10.27596 -10.04062 -9.46715 -9.21113 -9.15742 -8.90699 -8.47688 -8.44468 -7.36350 -6.05164 -3.98452 1.03592 1.64053 2.08914 3.19204 3.26941 3.37036 3.39011 4.43173 4.52702 4.85135 4.96279 5.04176 5.21021 5.23352 5.34351 5.50558 5.52778 5.64969 5.70360 5.74129 5.84405 5.89505 5.95931 6.03555 6.05511 6.12445 6.19377 6.30782 6.54415 6.55259 6.67746 6.74990 6.94751 7.23541 7.77685 7.93215 8.16419 8.26493 8.77235 9.11096 9.60732 11.08200 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.023628 B = 0.005358 C = 0.004845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.769473 B = 5224.344759 C = 5778.039637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.039 4.039 3 C -0.241 4.241 4 C 0.038 3.962 5 N -0.467 5.467 6 C 0.091 3.909 7 C 0.162 3.838 8 H 0.104 0.896 9 C -0.172 4.172 10 N -0.658 5.658 11 C 0.194 3.806 12 H -0.002 1.002 13 C -0.503 4.503 14 H 0.078 0.922 15 C 0.072 3.928 16 N -0.894 5.894 17 Si 0.857 3.143 18 H -0.283 1.283 19 H -0.288 1.288 20 H -0.250 1.250 21 C -0.129 4.129 22 C -0.156 4.156 23 S 0.109 5.891 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.166 0.834 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.330 0.670 34 H 0.262 0.738 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.044 0.956 38 H 0.048 0.952 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.568 -12.986 5.690 16.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.079 4.079 3 C -0.362 4.362 4 C -0.113 4.113 5 N -0.180 5.180 6 C -0.188 4.188 7 C 0.048 3.952 8 H 0.122 0.878 9 C -0.232 4.232 10 N -0.290 5.290 11 C 0.086 3.914 12 H 0.016 0.984 13 C -0.541 4.541 14 H 0.096 0.904 15 C -0.130 4.130 16 N -0.532 5.532 17 Si 0.684 3.316 18 H -0.209 1.209 19 H -0.214 1.214 20 H -0.175 1.175 21 C -0.168 4.168 22 C -0.214 4.214 23 S 0.365 5.635 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.183 0.817 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.150 0.850 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 6.890 -12.807 4.721 15.290 hybrid contribution 1.283 0.799 0.566 1.614 sum 8.172 -12.007 5.288 15.457 Atomic orbital electron populations 1.21810 0.94411 1.01661 1.02803 1.19891 0.96022 0.89220 1.02799 1.25864 1.12418 1.02473 0.95452 1.21642 1.01101 0.88987 0.99588 1.66180 1.16630 1.16321 1.18844 1.27264 1.00336 1.00350 0.90825 1.20040 0.90959 0.85346 0.98905 0.87833 1.22485 0.96230 1.02175 1.02329 1.60328 1.55254 1.07547 1.05880 1.19573 0.96500 0.84388 0.90939 0.98403 1.21001 1.06212 1.07262 1.19599 0.90375 1.24914 0.94813 0.96982 0.96258 1.69973 1.19744 1.32143 1.31322 0.87342 0.83849 0.81265 0.79161 1.20946 1.21374 1.17462 1.22135 0.95669 0.99995 0.98955 1.21925 0.99245 1.00416 0.99788 1.83965 1.61098 1.06674 1.11742 0.92255 0.92242 0.92313 0.90255 0.91039 0.81673 0.91574 0.92067 0.92578 0.84999 0.92817 0.91986 0.91780 0.93732 0.93323 0.93757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.89 37.16 0.37 -1.08 16 2 C -0.04 -0.39 6.47 -27.89 -0.18 -0.57 16 3 C -0.24 -3.24 5.85 -35.92 -0.21 -3.45 16 4 C 0.04 0.57 11.25 -19.18 -0.22 0.35 16 5 N -0.47 -8.17 10.50 -11.86 -0.12 -8.29 16 6 C 0.09 1.61 6.25 -13.46 -0.08 1.52 16 7 C 0.16 2.97 2.89 -68.87 -0.20 2.77 16 8 H 0.10 2.06 7.66 -51.93 -0.40 1.66 16 9 C -0.17 -2.60 9.15 37.16 0.34 -2.26 16 10 N -0.66 -13.60 6.00 -102.17 -0.61 -14.21 16 11 C 0.19 4.45 1.38 -68.86 -0.09 4.35 16 12 H 0.00 -0.03 6.05 -51.93 -0.31 -0.35 16 13 C -0.50 -13.94 9.02 -34.44 -0.31 -14.25 16 14 H 0.08 2.44 8.06 -52.48 -0.42 2.02 16 15 C 0.07 2.04 5.34 -17.82 -0.10 1.95 16 16 N -0.89 -27.16 13.96 55.43 0.77 -26.38 16 17 Si 0.86 20.69 25.70 -169.99 -4.37 16.32 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.25 -5.61 5.34 56.52 0.30 -5.30 16 21 C -0.13 -2.75 4.70 -26.73 -0.13 -2.87 16 22 C -0.16 -2.68 9.80 37.16 0.36 -2.32 16 23 S 0.11 1.65 23.18 -107.50 -2.49 -0.84 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.17 1.99 8.06 -52.49 -0.42 1.56 16 30 H 0.07 0.99 7.59 -51.93 -0.39 0.60 16 31 H 0.06 0.90 8.04 -51.93 -0.42 0.48 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.33 6.33 6.13 -39.29 -0.24 6.09 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.06 1.39 4.60 -51.93 -0.24 1.15 16 36 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.77 6.38 -51.93 -0.33 0.44 16 39 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 325.05 15.07 4.90 4.90 Total: -1.00 -30.56 325.05 -8.59 -39.15 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -6.22 Total: 5.22 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -0.44 Total: -15.86 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: 0.04 Total: -48.89 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.37 Total: 16.32 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -2.49 Total: -0.84 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.56 -8.59 -39.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126065952.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.253 kcal (2) G-P(sol) polarization free energy of solvation -30.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds