Wall clock time and date at job start Mon Mar 30 2020 07:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47083 * 2 1 4 4 C 1.33643 * 126.04133 * 89.69173 * 3 2 1 5 5 N 1.31783 * 114.49899 * 179.78601 * 4 3 2 6 6 C 1.29022 * 117.12400 * 0.51675 * 5 4 3 7 7 C 1.50699 * 124.91085 * 179.75146 * 6 5 4 8 8 H 1.09001 * 109.47028 * 194.95781 * 7 6 5 9 9 C 1.52995 * 109.47276 * 74.95968 * 7 6 5 10 10 N 1.46900 * 109.47391 * 314.95793 * 7 6 5 11 11 C 1.46898 * 111.00068 * 206.19220 * 10 7 6 12 12 H 1.08997 * 109.47238 * 326.00475 * 11 10 7 13 13 C 1.50704 * 109.47274 * 86.00844 * 11 10 7 14 14 H 1.08006 * 119.99653 * 2.64140 * 13 11 10 15 15 C 1.37876 * 120.00119 * 182.65270 * 13 11 10 16 16 N 1.31517 * 119.99647 * 194.09880 * 15 13 11 17 17 Si 1.86800 * 120.00076 * 14.09421 * 15 13 11 18 18 H 1.48492 * 109.47384 * 94.85595 * 17 15 13 19 19 H 1.48506 * 109.46826 * 214.85719 * 17 15 13 20 20 H 1.48502 * 109.46930 * 334.85426 * 17 15 13 21 21 C 1.53001 * 109.47291 * 206.00381 * 11 10 7 22 22 C 1.53000 * 109.46836 * 65.70455 * 21 11 10 23 23 S 1.70975 * 110.17171 * 359.71741 * 6 5 4 24 24 H 1.08998 * 109.47742 * 300.00585 * 1 2 3 25 25 H 1.08997 * 109.47319 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.46397 * 60.00326 * 1 2 3 27 27 H 1.09000 * 109.46937 * 119.99794 * 2 1 3 28 28 H 1.08996 * 109.47310 * 239.99706 * 2 1 3 29 29 H 1.08000 * 122.74132 * 359.97113 * 4 3 2 30 30 H 1.09006 * 109.47275 * 175.10773 * 9 7 6 31 31 H 1.09000 * 109.47359 * 295.11243 * 9 7 6 32 32 H 1.08999 * 109.47425 * 55.11435 * 9 7 6 33 33 H 1.00899 * 111.00314 * 82.23759 * 10 7 6 34 34 H 0.97002 * 119.99742 * 179.97438 * 16 15 13 35 35 H 1.08997 * 109.47276 * 185.70177 * 21 11 10 36 36 H 1.08994 * 109.47196 * 305.70962 * 21 11 10 37 37 H 1.09000 * 109.47440 * 183.15385 * 22 21 11 38 38 H 1.08999 * 109.47128 * 303.15850 * 22 21 11 39 39 H 1.08997 * 109.47238 * 63.15737 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2889 2.1641 1.0806 5 7 2.7249 3.3794 0.8170 6 6 2.8405 3.7062 -0.4258 7 6 3.3153 5.0466 -0.9246 8 1 3.0700 5.1487 -1.9817 9 6 4.8305 5.1519 -0.7403 10 7 2.6541 6.1148 -0.1631 11 6 2.5737 7.3514 -0.9520 12 1 3.4556 7.4352 -1.5870 13 6 1.3366 7.3192 -1.8119 14 1 0.6538 6.4850 -1.7448 15 6 1.0765 8.3544 -2.6846 16 7 -0.1161 8.4740 -3.2262 17 14 2.4177 9.5873 -3.0975 18 1 3.1037 9.1724 -4.3474 19 1 1.8139 10.9308 -3.2868 20 1 3.4017 9.6389 -1.9865 21 6 2.5081 8.5545 -0.0090 22 6 3.8240 8.6697 0.7630 23 16 2.3780 2.3980 -1.4249 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3632 0.5138 -0.8901 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 2.1531 1.7975 2.0874 30 1 5.1861 6.0840 -1.1795 31 1 5.0691 5.1370 0.3231 32 1 5.3159 4.3096 -1.2334 33 1 3.1232 6.2762 0.7154 34 1 -0.2992 9.2025 -3.8399 35 1 2.3468 9.4628 -0.5896 36 1 1.6853 8.4212 0.6933 37 1 3.7568 9.4925 1.4748 38 1 4.0132 7.7398 1.2992 39 1 4.6394 8.8589 0.0649 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126065952.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:03 Heat of formation + Delta-G solvation = 12.523151 kcal Electronic energy + Delta-G solvation = -18525.397338 eV Core-core repulsion = 15786.563663 eV Total energy + Delta-G solvation = -2738.833675 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.71250 -38.70754 -35.71447 -34.62370 -33.80933 -30.63437 -29.34119 -28.47164 -26.58793 -24.46562 -23.90918 -22.85282 -21.61900 -19.76619 -18.99725 -18.78973 -16.84727 -16.77495 -16.04288 -15.89299 -15.38938 -15.08197 -14.92746 -14.68859 -14.58361 -14.22835 -13.88523 -13.64064 -13.49371 -13.09767 -12.84790 -12.70045 -12.59327 -12.53692 -12.33230 -12.27489 -12.02356 -11.73557 -11.69598 -11.25184 -11.12509 -10.65842 -10.44072 -10.12122 -9.62634 -9.00963 -8.25301 -6.23516 -0.16859 0.45748 0.89024 1.35282 1.38957 1.48559 1.98010 2.37764 3.07344 3.31143 3.54915 3.92267 4.02612 4.16707 4.20073 4.37400 4.38384 4.41786 4.43447 4.51512 4.61502 4.73553 4.80078 4.84620 4.95361 5.01934 5.07664 5.13192 5.17606 5.18769 5.31590 5.33215 5.41246 5.50632 5.80613 6.09495 6.49039 6.81448 6.93006 6.95654 7.40131 8.92351 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.023628 B = 0.005358 C = 0.004845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.769473 B = 5224.344759 C = 5778.039637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.040 4.040 3 C -0.219 4.219 4 C 0.016 3.984 5 N -0.482 5.482 6 C 0.060 3.940 7 C 0.161 3.839 8 H 0.077 0.923 9 C -0.160 4.160 10 N -0.672 5.672 11 C 0.202 3.798 12 H 0.005 0.995 13 C -0.505 4.505 14 H 0.023 0.977 15 C 0.013 3.987 16 N -0.948 5.948 17 Si 0.926 3.074 18 H -0.279 1.279 19 H -0.289 1.289 20 H -0.218 1.218 21 C -0.129 4.129 22 C -0.147 4.147 23 S 0.104 5.896 24 H 0.052 0.948 25 H 0.084 0.916 26 H 0.039 0.961 27 H 0.107 0.893 28 H 0.084 0.916 29 H 0.193 0.807 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.340 0.660 34 H 0.263 0.737 35 H 0.050 0.950 36 H 0.049 0.951 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.885 -13.751 6.971 18.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.079 4.079 3 C -0.341 4.341 4 C -0.134 4.134 5 N -0.196 5.196 6 C -0.219 4.219 7 C 0.047 3.953 8 H 0.095 0.905 9 C -0.221 4.221 10 N -0.305 5.305 11 C 0.093 3.907 12 H 0.023 0.977 13 C -0.543 4.543 14 H 0.041 0.959 15 C -0.184 4.184 16 N -0.588 5.588 17 Si 0.749 3.251 18 H -0.205 1.205 19 H -0.215 1.215 20 H -0.140 1.140 21 C -0.168 4.168 22 C -0.205 4.205 23 S 0.359 5.641 24 H 0.071 0.929 25 H 0.103 0.897 26 H 0.059 0.941 27 H 0.125 0.875 28 H 0.102 0.898 29 H 0.209 0.791 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.161 0.839 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.234 -13.589 6.033 17.502 hybrid contribution 0.412 0.839 0.195 0.955 sum 9.646 -12.750 6.228 17.158 Atomic orbital electron populations 1.21808 0.94169 1.02998 1.01610 1.20100 0.96029 0.87037 1.04771 1.26357 1.10164 1.03625 0.93925 1.22070 1.01750 0.88413 1.01152 1.66148 1.16770 1.17760 1.18916 1.27077 1.02451 1.00802 0.91534 1.19976 0.93041 0.85189 0.97094 0.90456 1.22366 0.93648 1.03052 1.03003 1.60146 1.56820 1.07173 1.06377 1.19355 0.93991 0.86352 0.91012 0.97719 1.21225 1.07052 1.05396 1.20663 0.95878 1.25791 0.97095 0.99496 0.95972 1.70135 1.22379 1.33589 1.32718 0.86233 0.81100 0.77912 0.79816 1.20536 1.21497 1.13998 1.22022 0.97909 0.98288 0.98568 1.21833 0.96572 1.02080 0.99967 1.83939 1.60939 1.06512 1.12689 0.92852 0.89684 0.94127 0.87512 0.89754 0.79058 0.91267 0.91366 0.90897 0.83894 0.92791 0.93159 0.93244 0.91531 0.92082 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.89 71.98 0.71 -1.86 16 2 C -0.04 -0.68 6.47 29.85 0.19 -0.48 16 3 C -0.22 -5.56 5.85 24.64 0.14 -5.42 16 4 C 0.02 0.46 11.25 83.66 0.94 1.40 16 5 N -0.48 -16.58 10.50 -191.45 -2.01 -18.60 16 6 C 0.06 2.11 6.25 88.52 0.55 2.67 16 7 C 0.16 5.95 2.89 44.17 0.13 6.08 16 8 H 0.08 3.20 7.66 -2.39 -0.02 3.18 16 9 C -0.16 -4.62 9.15 71.98 0.66 -3.96 16 10 N -0.67 -27.93 6.00 -477.17 -2.87 -30.79 16 11 C 0.20 9.23 1.38 44.17 0.06 9.29 16 12 H 0.01 0.24 6.05 -2.39 -0.01 0.22 16 13 C -0.50 -29.17 9.02 25.60 0.23 -28.93 16 14 H 0.02 1.54 8.06 -2.91 -0.02 1.52 16 15 C 0.01 0.78 5.34 84.65 0.45 1.24 16 16 N -0.95 -60.04 13.96 21.45 0.30 -59.74 16 17 Si 0.93 42.92 25.70 68.60 1.76 44.68 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 19 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 20 H -0.22 -8.86 5.34 99.48 0.53 -8.33 16 21 C -0.13 -5.34 4.70 30.59 0.14 -5.20 16 22 C -0.15 -4.56 9.80 71.98 0.71 -3.85 16 23 S 0.10 3.14 23.18 -56.49 -1.31 1.83 16 24 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.19 4.15 8.06 -2.91 -0.02 4.13 16 30 H 0.07 1.93 7.59 -2.38 -0.02 1.91 16 31 H 0.07 1.86 8.04 -2.39 -0.02 1.84 16 32 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.34 12.73 6.13 -89.69 -0.55 12.18 16 34 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 35 H 0.05 2.17 4.60 -2.39 -0.01 2.16 16 36 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.06 1.74 6.38 -2.39 -0.02 1.72 16 39 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -69.42 325.05 1.11 -68.31 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: 0.31 Total: 23.33 kcal Atomic # 6 Polarization: -33.96 SS G_CDS: 4.92 Total: -29.03 kcal Atomic # 7 Polarization: -104.55 SS G_CDS: -4.58 Total: -109.13 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.76 Total: 44.68 kcal Atomic # 16 Polarization: 3.14 SS G_CDS: -1.31 Total: 1.83 kcal Total: -69.42 1.11 -68.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126065952.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.837 kcal (2) G-P(sol) polarization free energy of solvation -69.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds