Wall clock time and date at job start Mon Mar 30 2020 07:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29028 * 124.91855 * 2 1 4 4 C 1.31771 * 117.12878 * 180.02562 * 3 2 1 5 5 C 1.33644 * 114.50041 * 359.97438 * 4 3 2 6 6 C 1.50700 * 126.03938 * 180.02562 * 5 4 3 7 7 N 1.46899 * 109.47280 * 90.00130 * 6 5 4 8 8 C 1.46897 * 111.00314 * 179.97438 * 7 6 5 9 9 C 1.53007 * 109.46932 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47111 * 299.99911 * 9 8 7 11 11 C 1.52997 * 109.47230 * 60.00241 * 9 8 7 12 12 C 1.53000 * 109.46715 * 180.02562 * 9 8 7 13 13 C 1.50702 * 109.46780 * 180.02562 * 12 9 8 14 14 H 1.07996 * 120.00231 * 0.02562 * 13 12 9 15 15 C 1.37881 * 119.99660 * 179.97438 * 13 12 9 16 16 N 1.31513 * 120.00093 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99937 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46988 * 59.99806 * 17 15 13 19 19 H 1.48497 * 109.47442 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47198 * 300.00220 * 17 15 13 21 21 S 1.70979 * 124.91569 * 180.02562 * 2 1 3 22 22 H 1.08997 * 109.47106 * 269.99927 * 1 2 3 23 23 H 1.08995 * 109.46993 * 30.00161 * 1 2 3 24 24 H 1.08999 * 109.46860 * 149.99764 * 1 2 3 25 25 H 1.08002 * 122.75353 * 180.27327 * 4 3 2 26 26 H 1.08996 * 109.47247 * 210.00530 * 6 5 4 27 27 H 1.09005 * 109.47214 * 330.00706 * 6 5 4 28 28 H 1.00905 * 110.99822 * 56.04494 * 7 6 5 29 29 H 1.08992 * 109.47509 * 300.00108 * 8 7 6 30 30 H 1.09000 * 109.46927 * 60.00352 * 8 7 6 31 31 H 1.09003 * 109.47049 * 60.00697 * 10 9 8 32 32 H 1.09004 * 109.47267 * 179.97438 * 10 9 8 33 33 H 1.09000 * 109.47470 * 300.00232 * 10 9 8 34 34 H 1.08999 * 109.47135 * 59.99410 * 11 9 8 35 35 H 1.08997 * 109.47284 * 179.97438 * 11 9 8 36 36 H 1.09003 * 109.47137 * 300.00073 * 11 9 8 37 37 H 1.08997 * 109.47294 * 300.00247 * 12 9 8 38 38 H 1.09000 * 109.47262 * 60.00138 * 12 9 8 39 39 H 0.97001 * 120.00029 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5511 0.8794 -0.0005 5 6 3.9354 -0.4006 -0.0004 6 6 5.3575 -0.8994 -0.0004 7 7 5.8196 -1.0614 1.3846 8 6 7.2050 -1.5481 1.4238 9 6 7.6495 -1.7046 2.8795 10 6 7.5642 -0.3508 3.5872 11 6 6.7363 -2.7081 3.5865 12 6 9.0928 -2.2108 2.9203 13 6 9.5303 -2.3656 4.3541 14 1 8.8473 -2.1272 5.1559 15 6 10.8025 -2.8126 4.6421 16 7 11.6338 -3.1043 3.6657 17 14 11.3452 -3.0038 6.4193 18 1 10.4587 -3.9777 7.1056 19 1 12.7455 -3.4964 6.4590 20 1 11.2625 -1.6897 7.1063 21 16 2.4856 -1.4020 -0.0006 22 1 -0.3633 0.0000 1.0276 23 1 -0.3633 0.8899 -0.5138 24 1 -0.3633 -0.8900 -0.5139 25 1 4.2532 1.7001 0.0038 26 1 5.4058 -1.8594 -0.5143 27 1 5.9950 -0.1798 -0.5142 28 1 5.2065 -1.6745 1.9009 29 1 7.2658 -2.5127 0.9201 30 1 7.8555 -0.8333 0.9198 31 1 6.5361 0.0102 3.5581 32 1 7.8804 -0.4624 4.6243 33 1 8.2148 0.3642 3.0835 34 1 6.7971 -3.6725 3.0823 35 1 7.0532 -2.8200 4.6234 36 1 5.7082 -2.3471 3.5573 37 1 9.1540 -3.1751 2.4160 38 1 9.7431 -1.4955 2.4168 39 1 12.5289 -3.4184 3.8684 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126770328.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:12 Heat of formation + Delta-G solvation = 22.699103 kcal Electronic energy + Delta-G solvation = -17919.623637 eV Core-core repulsion = 15181.231224 eV Total energy + Delta-G solvation = -2738.392413 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.80984 -37.73423 -34.87845 -32.57674 -31.82715 -29.20808 -26.95773 -26.34899 -25.71277 -24.35264 -23.29513 -22.07657 -19.59820 -18.17895 -17.82524 -16.27281 -15.82126 -15.26461 -14.77356 -14.72182 -14.27287 -14.14301 -13.72333 -13.31445 -13.00269 -12.87281 -12.56467 -12.47087 -12.15077 -11.97689 -11.70615 -11.33502 -10.97100 -10.87751 -10.79322 -10.49871 -10.29324 -10.15928 -9.77582 -9.69630 -9.45436 -9.06566 -8.90667 -8.81330 -8.31837 -8.19006 -5.96576 -3.96785 0.56203 1.18064 1.60466 2.72406 3.34671 3.39315 3.41621 3.99916 4.42664 4.52971 4.80573 4.85589 5.07656 5.14272 5.19613 5.39195 5.51215 5.57635 5.64890 5.68602 5.79131 5.95737 6.08864 6.20163 6.29600 6.47840 6.64894 6.76283 6.81977 7.14051 7.19015 7.24723 7.33010 7.55143 7.61397 7.69230 7.84113 8.03458 8.47730 9.08291 9.66026 11.15069 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.046617 B = 0.003261 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.490929 B = 8584.052160 C = 8677.936929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.039 3.961 3 N -0.475 5.475 4 C 0.051 3.949 5 C -0.208 4.208 6 C 0.133 3.867 7 N -0.681 5.681 8 C 0.069 3.931 9 C -0.058 4.058 10 C -0.116 4.116 11 C -0.129 4.129 12 C 0.034 3.966 13 C -0.508 4.508 14 H 0.058 0.942 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.888 3.112 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.277 1.277 21 S 0.110 5.890 22 H 0.085 0.915 23 H 0.087 0.913 24 H 0.079 0.921 25 H 0.177 0.823 26 H 0.040 0.960 27 H 0.093 0.907 28 H 0.340 0.660 29 H 0.026 0.974 30 H 0.069 0.931 31 H 0.042 0.958 32 H 0.054 0.946 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.065 0.935 36 H 0.032 0.968 37 H 0.013 0.987 38 H 0.015 0.985 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.617 3.684 -8.857 21.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.239 4.239 3 N -0.190 5.190 4 C -0.101 4.101 5 C -0.329 4.329 6 C 0.002 3.998 7 N -0.313 5.313 8 C -0.059 4.059 9 C -0.059 4.059 10 C -0.173 4.173 11 C -0.187 4.187 12 C -0.003 4.003 13 C -0.546 4.546 14 H 0.077 0.923 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.716 3.284 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.203 1.203 21 S 0.364 5.636 22 H 0.104 0.896 23 H 0.106 0.894 24 H 0.097 0.903 25 H 0.194 0.806 26 H 0.058 0.942 27 H 0.111 0.889 28 H 0.159 0.841 29 H 0.044 0.956 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.051 0.949 37 H 0.031 0.969 38 H 0.034 0.966 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -19.733 3.729 -8.829 21.938 hybrid contribution 1.018 -0.376 0.696 1.289 sum -18.716 3.354 -8.133 20.680 Atomic orbital electron populations 1.20419 0.85378 1.04003 1.03848 1.26986 1.01681 0.91060 1.04133 1.66285 1.05087 1.31580 1.16002 1.21694 0.90741 0.96064 1.01553 1.25953 0.99424 0.96141 1.11383 1.20286 0.87790 0.99750 0.91980 1.60664 1.04481 1.55511 1.10665 1.22162 0.87440 0.97414 0.98904 1.20637 0.98398 0.95648 0.91174 1.21601 0.99475 0.95762 1.00506 1.21775 0.96847 0.97979 1.02082 1.19117 0.88251 0.95799 0.97133 1.21198 0.97737 1.43339 0.92352 0.92340 1.25012 0.96922 0.95817 0.96803 1.69953 1.06803 1.45794 1.31227 0.86724 0.77582 0.78451 0.85634 1.20357 1.21435 1.20290 1.83992 0.98275 1.12651 1.68721 0.89646 0.89399 0.90251 0.80633 0.94229 0.88892 0.84119 0.95624 0.91238 0.93931 0.92662 0.94108 0.94067 0.91618 0.94896 0.96908 0.96633 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.46 36.01 0.38 -0.14 16 2 C 0.04 0.41 7.39 -13.46 -0.10 0.31 16 3 N -0.47 -6.04 10.54 -11.86 -0.13 -6.16 16 4 C 0.05 0.62 11.25 -19.19 -0.22 0.41 16 5 C -0.21 -2.45 6.11 -35.92 -0.22 -2.67 16 6 C 0.13 1.61 6.22 -4.98 -0.03 1.58 16 7 N -0.68 -9.73 5.70 -115.06 -0.66 -10.38 16 8 C 0.07 1.16 4.65 -3.82 -0.02 1.14 16 9 C -0.06 -1.15 0.60 -154.51 -0.09 -1.24 16 10 C -0.12 -2.25 8.06 37.16 0.30 -1.95 16 11 C -0.13 -2.39 7.89 37.16 0.29 -2.10 16 12 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 13 C -0.51 -13.85 7.65 -34.44 -0.26 -14.11 16 14 H 0.06 1.55 5.68 -52.49 -0.30 1.25 16 15 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 16 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 17 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 S 0.11 1.12 23.18 -107.50 -2.49 -1.37 16 22 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.18 1.94 8.06 -52.49 -0.42 1.51 16 26 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.34 4.82 6.76 -39.29 -0.27 4.56 16 29 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 32 H 0.05 1.15 6.62 -51.93 -0.34 0.80 16 33 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 1.32 6.62 -51.93 -0.34 0.98 16 36 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 37 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 329.13 15.07 4.96 4.96 Total: -1.00 -30.21 329.13 -8.97 -39.18 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -6.20 Total: -0.17 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: -0.18 Total: -16.57 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: -0.04 Total: -42.60 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.49 Total: -1.37 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.21 -8.97 -39.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126770328.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.880 kcal (2) G-P(sol) polarization free energy of solvation -30.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds