Wall clock time and date at job start Mon Mar 30 2020 07:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29028 * 124.91855 * 2 1 4 4 C 1.31771 * 117.12878 * 180.02562 * 3 2 1 5 5 C 1.33644 * 114.50041 * 359.97438 * 4 3 2 6 6 C 1.50700 * 126.03938 * 180.02562 * 5 4 3 7 7 N 1.46899 * 109.47280 * 90.00130 * 6 5 4 8 8 C 1.46897 * 111.00314 * 179.97438 * 7 6 5 9 9 C 1.53007 * 109.46932 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47111 * 299.99911 * 9 8 7 11 11 C 1.52997 * 109.47230 * 60.00241 * 9 8 7 12 12 C 1.53000 * 109.46715 * 180.02562 * 9 8 7 13 13 C 1.50702 * 109.46780 * 180.02562 * 12 9 8 14 14 H 1.07996 * 120.00231 * 0.02562 * 13 12 9 15 15 C 1.37881 * 119.99660 * 179.97438 * 13 12 9 16 16 N 1.31513 * 120.00093 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99937 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46988 * 59.99806 * 17 15 13 19 19 H 1.48497 * 109.47442 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47198 * 300.00220 * 17 15 13 21 21 S 1.70979 * 124.91569 * 180.02562 * 2 1 3 22 22 H 1.08997 * 109.47106 * 269.99927 * 1 2 3 23 23 H 1.08995 * 109.46993 * 30.00161 * 1 2 3 24 24 H 1.08999 * 109.46860 * 149.99764 * 1 2 3 25 25 H 1.08002 * 122.75353 * 180.27327 * 4 3 2 26 26 H 1.08996 * 109.47247 * 210.00530 * 6 5 4 27 27 H 1.09005 * 109.47214 * 330.00706 * 6 5 4 28 28 H 1.00905 * 110.99822 * 56.04494 * 7 6 5 29 29 H 1.08992 * 109.47509 * 300.00108 * 8 7 6 30 30 H 1.09000 * 109.46927 * 60.00352 * 8 7 6 31 31 H 1.09003 * 109.47049 * 60.00697 * 10 9 8 32 32 H 1.09004 * 109.47267 * 179.97438 * 10 9 8 33 33 H 1.09000 * 109.47470 * 300.00232 * 10 9 8 34 34 H 1.08999 * 109.47135 * 59.99410 * 11 9 8 35 35 H 1.08997 * 109.47284 * 179.97438 * 11 9 8 36 36 H 1.09003 * 109.47137 * 300.00073 * 11 9 8 37 37 H 1.08997 * 109.47294 * 300.00247 * 12 9 8 38 38 H 1.09000 * 109.47262 * 60.00138 * 12 9 8 39 39 H 0.97001 * 120.00029 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5511 0.8794 -0.0005 5 6 3.9354 -0.4006 -0.0004 6 6 5.3575 -0.8994 -0.0004 7 7 5.8196 -1.0614 1.3846 8 6 7.2050 -1.5481 1.4238 9 6 7.6495 -1.7046 2.8795 10 6 7.5642 -0.3508 3.5872 11 6 6.7363 -2.7081 3.5865 12 6 9.0928 -2.2108 2.9203 13 6 9.5303 -2.3656 4.3541 14 1 8.8473 -2.1272 5.1559 15 6 10.8025 -2.8126 4.6421 16 7 11.6338 -3.1043 3.6657 17 14 11.3452 -3.0038 6.4193 18 1 10.4587 -3.9777 7.1056 19 1 12.7455 -3.4964 6.4590 20 1 11.2625 -1.6897 7.1063 21 16 2.4856 -1.4020 -0.0006 22 1 -0.3633 0.0000 1.0276 23 1 -0.3633 0.8899 -0.5138 24 1 -0.3633 -0.8900 -0.5139 25 1 4.2532 1.7001 0.0038 26 1 5.4058 -1.8594 -0.5143 27 1 5.9950 -0.1798 -0.5142 28 1 5.2065 -1.6745 1.9009 29 1 7.2658 -2.5127 0.9201 30 1 7.8555 -0.8333 0.9198 31 1 6.5361 0.0102 3.5581 32 1 7.8804 -0.4624 4.6243 33 1 8.2148 0.3642 3.0835 34 1 6.7971 -3.6725 3.0823 35 1 7.0532 -2.8200 4.6234 36 1 5.7082 -2.3471 3.5573 37 1 9.1540 -3.1751 2.4160 38 1 9.7431 -1.4955 2.4168 39 1 12.5289 -3.4184 3.8684 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126770328.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:11 Heat of formation + Delta-G solvation = 4.171699 kcal Electronic energy + Delta-G solvation = -17920.427045 eV Core-core repulsion = 15181.231224 eV Total energy + Delta-G solvation = -2739.195821 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.66953 -39.20755 -36.21268 -34.38772 -32.87241 -30.22788 -28.84434 -27.90638 -26.96012 -25.60575 -24.43993 -23.58591 -20.49551 -19.48867 -18.91485 -18.32526 -16.99308 -16.60867 -16.11043 -15.80975 -15.53973 -15.37198 -14.80113 -14.56369 -14.31350 -14.16904 -13.87903 -13.45709 -13.42723 -13.29950 -12.88144 -12.74379 -12.71242 -12.51068 -12.25588 -12.16279 -12.10330 -11.92646 -11.38695 -10.88359 -10.80630 -10.59376 -10.49411 -10.26601 -9.72053 -9.35129 -8.13642 -6.20437 -0.27106 0.37904 0.77377 1.41227 1.43152 1.50474 1.85007 2.44085 3.20341 3.24614 3.36039 3.86691 4.09274 4.15834 4.19328 4.26952 4.37739 4.62598 4.64520 4.68762 4.75581 4.78612 4.86994 4.95389 5.04793 5.06839 5.19932 5.21160 5.28344 5.51774 5.54072 5.58222 5.63884 5.86691 5.92692 5.98692 6.36716 6.39787 6.78094 6.94485 7.46790 8.98443 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.046617 B = 0.003261 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.490929 B = 8584.052160 C = 8677.936929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.039 3.961 3 N -0.506 5.506 4 C 0.042 3.958 5 C -0.225 4.225 6 C 0.137 3.863 7 N -0.679 5.679 8 C 0.082 3.918 9 C -0.055 4.055 10 C -0.107 4.107 11 C -0.123 4.123 12 C 0.041 3.959 13 C -0.516 4.516 14 H 0.065 0.935 15 C -0.003 4.003 16 N -0.937 5.937 17 Si 0.954 3.046 18 H -0.268 1.268 19 H -0.288 1.288 20 H -0.269 1.269 21 S 0.136 5.864 22 H 0.098 0.902 23 H 0.092 0.908 24 H 0.101 0.899 25 H 0.180 0.820 26 H 0.047 0.953 27 H 0.097 0.903 28 H 0.342 0.658 29 H 0.024 0.976 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.037 0.963 33 H 0.032 0.968 34 H 0.039 0.961 35 H 0.046 0.954 36 H 0.063 0.937 37 H -0.014 1.014 38 H -0.014 1.014 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.753 3.658 -8.358 23.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.238 4.238 3 N -0.222 5.222 4 C -0.109 4.109 5 C -0.346 4.346 6 C 0.006 3.994 7 N -0.312 5.312 8 C -0.047 4.047 9 C -0.056 4.056 10 C -0.164 4.164 11 C -0.180 4.180 12 C 0.003 3.997 13 C -0.554 4.554 14 H 0.083 0.917 15 C -0.200 4.200 16 N -0.579 5.579 17 Si 0.780 3.220 18 H -0.193 1.193 19 H -0.213 1.213 20 H -0.194 1.194 21 S 0.391 5.609 22 H 0.116 0.884 23 H 0.110 0.890 24 H 0.119 0.881 25 H 0.197 0.803 26 H 0.065 0.935 27 H 0.115 0.885 28 H 0.162 0.838 29 H 0.042 0.958 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.004 0.996 38 H 0.004 0.996 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -21.894 3.702 -8.329 23.716 hybrid contribution 1.601 -0.361 0.483 1.711 sum -20.293 3.341 -7.845 22.012 Atomic orbital electron populations 1.20623 0.82895 1.05321 1.05017 1.27668 1.03230 0.90779 1.02163 1.66342 1.05377 1.32721 1.17718 1.21854 0.91038 0.96528 1.01466 1.25888 0.99745 0.96464 1.12485 1.20252 0.88250 1.00301 0.90548 1.60578 1.03046 1.55116 1.12415 1.21856 0.89015 0.97364 0.96473 1.20500 0.95394 0.96033 0.93662 1.21497 1.00505 0.95285 0.99100 1.21685 0.98150 0.97632 1.00521 1.18993 0.91397 0.93758 0.95522 1.21596 0.97875 1.42352 0.93553 0.91712 1.25898 0.97235 0.95736 1.01133 1.70094 1.07176 1.47097 1.33503 0.85657 0.77108 0.78796 0.80444 1.19284 1.21342 1.19427 1.83866 0.97125 1.11834 1.68110 0.88393 0.88968 0.88055 0.80325 0.93472 0.88458 0.83837 0.95806 0.91768 0.91747 0.94371 0.94904 0.94229 0.93455 0.91784 0.99578 0.99572 0.93152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.46 71.24 0.75 -0.11 16 2 C 0.04 0.74 7.39 88.52 0.65 1.39 16 3 N -0.51 -12.16 10.54 -191.44 -2.02 -14.18 16 4 C 0.04 0.99 11.25 83.66 0.94 1.93 16 5 C -0.22 -4.92 6.11 24.64 0.15 -4.77 16 6 C 0.14 3.09 6.22 85.56 0.53 3.62 16 7 N -0.68 -18.20 5.70 -517.94 -2.95 -21.16 16 8 C 0.08 2.69 4.65 86.31 0.40 3.09 16 9 C -0.06 -2.17 0.60 -52.18 -0.03 -2.20 16 10 C -0.11 -4.05 8.06 71.98 0.58 -3.47 16 11 C -0.12 -4.38 7.89 71.98 0.57 -3.81 16 12 C 0.04 2.10 4.04 29.85 0.12 2.22 16 13 C -0.52 -28.45 7.65 25.60 0.20 -28.25 16 14 H 0.06 3.43 5.68 -2.91 -0.02 3.41 16 15 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 16 N -0.94 -57.17 13.29 21.45 0.28 -56.89 16 17 Si 0.95 44.41 29.54 68.60 2.03 46.44 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 21 S 0.14 2.48 23.18 -56.49 -1.31 1.17 16 22 H 0.10 0.86 8.14 -2.39 -0.02 0.85 16 23 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.18 3.83 8.06 -2.91 -0.02 3.80 16 26 H 0.05 1.00 8.14 -2.39 -0.02 0.99 16 27 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 28 H 0.34 8.87 6.76 -89.69 -0.61 8.26 16 29 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.06 2.15 7.60 -2.39 -0.02 2.14 16 32 H 0.04 1.55 6.62 -2.38 -0.02 1.54 16 33 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.05 1.85 6.62 -2.39 -0.02 1.84 16 36 H 0.06 1.88 6.57 -2.39 -0.02 1.86 16 37 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 38 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 39 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -65.13 329.13 1.77 -63.36 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.42 Total: 11.35 kcal Atomic # 6 Polarization: -35.41 SS G_CDS: 5.32 Total: -30.09 kcal Atomic # 7 Polarization: -87.54 SS G_CDS: -4.69 Total: -92.23 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -1.31 Total: 1.17 kcal Total: -65.13 1.77 -63.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126770328.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.531 kcal (2) G-P(sol) polarization free energy of solvation -65.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds