Wall clock time and date at job start Mon Mar 30 2020 07:31:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30903 * 1
3 3 Si 1.86797 * 120.00062 * 2 1
4 4 H 1.48497 * 109.47010 * 239.99599 * 3 2 1
5 5 H 1.48503 * 109.47012 * 0.02562 * 3 2 1
6 6 H 1.48501 * 109.47071 * 119.99917 * 3 2 1
7 7 C 1.39887 * 119.99841 * 179.97438 * 2 1 3
8 8 H 1.07993 * 119.99857 * 163.89753 * 7 2 1
9 9 C 1.41029 * 119.99853 * 343.90046 * 7 2 1
10 10 C 1.40665 * 120.26938 * 333.52698 * 9 7 2
11 11 C 1.38003 * 119.77047 * 179.73752 * 10 9 7
12 12 N 1.39857 * 119.84047 * 180.23297 * 11 10 9
13 13 C 1.46500 * 119.99744 * 180.30724 * 12 11 10
14 14 C 1.50704 * 109.46978 * 179.97438 * 13 12 11
15 15 C 1.38231 * 120.00135 * 269.73088 * 14 13 12
16 16 C 1.38238 * 119.99903 * 179.76893 * 15 14 13
17 17 C 1.38235 * 119.99630 * 0.49702 * 16 15 14
18 18 C 1.38232 * 120.00467 * 359.75852 * 17 16 15
19 19 C 1.38238 * 119.99838 * 359.97438 * 18 17 16
20 20 C 1.39603 * 120.32137 * 0.54573 * 11 10 9
21 21 C 1.38061 * 120.54669 * 359.70931 * 20 11 10
22 22 C 1.38730 * 120.22206 * 0.02867 * 21 20 11
23 23 N 1.38868 * 120.16451 * 179.97438 * 22 21 20
24 24 H 0.97006 * 120.00048 * 0.02562 * 1 2 3
25 25 H 1.07999 * 120.11464 * 359.97438 * 10 9 7
26 26 H 0.96995 * 120.00217 * 0.31276 * 12 11 10
27 27 H 1.08998 * 109.47765 * 300.00070 * 13 12 11
28 28 H 1.09000 * 109.47430 * 60.00259 * 13 12 11
29 29 H 1.07998 * 120.00008 * 359.97438 * 15 14 13
30 30 H 1.08001 * 120.00114 * 180.23120 * 16 15 14
31 31 H 1.08001 * 119.99837 * 179.72266 * 17 16 15
32 32 H 1.07995 * 120.00412 * 179.97438 * 18 17 16
33 33 H 1.07997 * 120.00151 * 179.97438 * 19 18 17
34 34 H 1.07994 * 119.72533 * 179.73631 * 20 11 10
35 35 H 1.08002 * 119.88702 * 179.97438 * 21 20 11
36 36 H 0.97003 * 120.00164 * 180.02562 * 23 22 21
37 37 H 0.97001 * 119.99872 * 0.02562 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3090 0.0000 0.0000
3 14 2.2430 1.6177 0.0000
4 1 3.0968 1.6963 -1.2124
5 1 1.2780 2.7464 0.0006
6 1 3.0968 1.6964 1.2125
7 6 2.0084 -1.2115 0.0005
8 1 3.0566 -1.2299 -0.2589
9 6 1.3447 -2.4087 0.3398
10 6 0.2178 -2.3808 1.1811
11 6 -0.4271 -3.5579 1.5021
12 7 -1.5506 -3.5313 2.3345
13 6 -2.2338 -4.7796 2.6829
14 6 -3.4031 -4.4775 3.5843
15 6 -3.2331 -4.4644 4.9561
16 6 -4.3046 -4.1827 5.7828
17 6 -5.5485 -3.9241 5.2380
18 6 -5.7198 -3.9425 3.8664
19 6 -4.6470 -4.2188 3.0395
20 6 0.0404 -4.7758 1.0051
21 6 1.1484 -4.8191 0.1825
22 6 1.8108 -3.6489 -0.1589
23 7 2.9255 -3.6939 -0.9859
24 1 -0.4850 0.8401 -0.0004
25 1 -0.1438 -1.4410 1.5715
26 1 -1.8775 -2.6864 2.6812
27 1 -2.5908 -5.2643 1.7742
28 1 -1.5392 -5.4421 3.1992
29 1 -2.2623 -4.6710 5.3818
30 1 -4.1709 -4.1687 6.8544
31 1 -6.3867 -3.7084 5.8840
32 1 -6.6917 -3.7409 3.4408
33 1 -4.7809 -4.2335 1.9680
34 1 -0.4691 -5.6916 1.2658
35 1 1.5012 -5.7672 -0.1956
36 1 3.3870 -2.8743 -1.2229
37 1 3.2425 -4.5450 -1.3267
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000127181393.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:31:59
Heat of formation + Delta-G solvation = 45.388465 kcal
Electronic energy + Delta-G solvation = -18981.016259 eV
Core-core repulsion = 16108.163779 eV
Total energy + Delta-G solvation = -2872.852479 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 268.127 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-39.26950 -37.82926 -35.34284 -33.43351 -32.53185 -30.86461 -30.42279 -29.38983
-26.95035 -24.85329 -24.37024 -22.52348 -21.56208 -20.67613 -19.63231 -17.05571
-16.91850 -16.01041 -15.44319 -15.18715 -15.15947 -14.82231 -14.51731 -14.15360
-13.42820 -13.05001 -12.91072 -12.59680 -12.42262 -12.29184 -11.85862 -11.69759
-11.32794 -11.11536 -10.98808 -10.98309 -10.87775 -10.37813 -9.89555 -9.72478
-9.33108 -9.02846 -8.89721 -8.74778 -7.74779 -7.20308 -6.59558 -5.52006
-4.04890 1.33653 1.42713 2.93988 3.13840 3.16650 3.32953 3.49880
3.76257 4.04983 4.68145 4.83529 4.90330 4.91634 5.02262 5.15853
5.44520 5.50252 5.54003 5.81967 5.91844 5.94257 6.12433 6.13603
6.38206 6.46576 6.50812 6.64914 6.74295 7.02000 7.13405 7.16689
7.33408 7.50811 7.71583 7.89779 8.01604 8.14016 8.47549 8.76549
8.91845 8.95685 9.01972 9.27729 9.35980 10.39701
Molecular weight = 268.13amu
Principal moments of inertia in cm(-1)
A = 0.019564 B = 0.004587 C = 0.003908
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1430.830479 B = 6102.324117 C = 7162.636778
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.800 5.800
2 C 0.077 3.923
3 Si 0.901 3.099
4 H -0.269 1.269
5 H -0.281 1.281
6 H -0.267 1.267
7 C -0.466 4.466
8 H 0.071 0.929
9 C 0.097 3.903
10 C -0.200 4.200
11 C 0.177 3.823
12 N -0.758 5.758
13 C 0.177 3.823
14 C -0.092 4.092
15 C -0.103 4.103
16 C -0.125 4.125
17 C -0.123 4.123
18 C -0.125 4.125
19 C -0.102 4.102
20 C -0.256 4.256
21 C -0.152 4.152
22 C 0.085 3.915
23 N -0.889 5.889
24 H 0.275 0.725
25 H 0.117 0.883
26 H 0.389 0.611
27 H 0.054 0.946
28 H 0.054 0.946
29 H 0.123 0.877
30 H 0.120 0.880
31 H 0.118 0.882
32 H 0.120 0.880
33 H 0.123 0.877
34 H 0.085 0.915
35 H 0.084 0.916
36 H 0.388 0.612
37 H 0.374 0.626
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.308 -5.500 6.936 11.479
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.427 5.427
2 C -0.139 4.139
3 Si 0.727 3.273
4 H -0.194 1.194
5 H -0.206 1.206
6 H -0.192 1.192
7 C -0.497 4.497
8 H 0.089 0.911
9 C 0.091 3.909
10 C -0.224 4.224
11 C 0.079 3.921
12 N -0.393 5.393
13 C 0.052 3.948
14 C -0.093 4.093
15 C -0.122 4.122
16 C -0.143 4.143
17 C -0.141 4.141
18 C -0.143 4.143
19 C -0.121 4.121
20 C -0.280 4.280
21 C -0.177 4.177
22 C -0.016 4.016
23 N -0.432 5.432
24 H 0.086 0.914
25 H 0.134 0.866
26 H 0.222 0.778
27 H 0.072 0.928
28 H 0.072 0.928
29 H 0.141 0.859
30 H 0.138 0.862
31 H 0.136 0.864
32 H 0.138 0.862
33 H 0.141 0.859
34 H 0.103 0.897
35 H 0.102 0.898
36 H 0.217 0.783
37 H 0.199 0.801
Dipole moment (debyes) X Y Z Total
from point charges -7.608 -5.515 6.968 11.698
hybrid contribution 0.408 1.082 -0.148 1.166
sum -7.200 -4.433 6.820 10.863
Atomic orbital electron populations
1.69874 1.07250 1.28479 1.37103 1.25740 0.94650 1.00636 0.92845
0.86493 0.80119 0.81084 0.79629 1.19353 1.20626 1.19160 1.19096
0.96865 0.91166 1.42566 0.91143 1.16957 0.92638 0.90248 0.91025
1.20472 1.01472 0.95103 1.05390 1.17516 0.87636 0.94187 0.92769
1.44317 1.32003 1.06072 1.56930 1.19910 0.90317 0.88733 0.95807
1.20126 0.95154 0.99761 0.94215 1.21142 0.98920 0.99083 0.93059
1.21133 0.93102 1.00448 0.99653 1.21131 0.97299 1.00480 0.95219
1.21140 0.98828 1.00587 0.93718 1.21162 0.92364 0.98471 1.00091
1.19607 1.03045 0.94386 1.10942 1.19699 0.99020 0.94627 1.04329
1.17864 0.92114 0.93918 0.97707 1.41810 1.33701 1.09120 1.58543
0.91402 0.86570 0.77819 0.92765 0.92783 0.85914 0.86235 0.86390
0.86208 0.85856 0.89714 0.89777 0.78348 0.80121
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.80 -21.19 10.98 55.55 0.61 -20.58 16
2 C 0.08 1.97 5.16 -17.33 -0.09 1.88 16
3 Si 0.90 19.11 29.59 -169.99 -5.03 14.08 16
4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16
5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16
6 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16
7 C -0.47 -12.35 8.48 -37.91 -0.32 -12.67 16
8 H 0.07 1.77 6.70 -52.49 -0.35 1.42 16
9 C 0.10 2.59 5.57 -106.65 -0.59 1.99 16
10 C -0.20 -5.26 8.49 -38.75 -0.33 -5.59 16
11 C 0.18 4.18 6.64 -83.77 -0.56 3.63 16
12 N -0.76 -14.92 5.73 -59.81 -0.34 -15.26 16
13 C 0.18 2.88 5.03 -5.19 -0.03 2.85 16
14 C -0.09 -1.30 5.25 -104.62 -0.55 -1.85 16
15 C -0.10 -1.34 9.70 -39.58 -0.38 -1.72 16
16 C -0.13 -1.42 10.05 -39.58 -0.40 -1.82 16
17 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16
18 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16
19 C -0.10 -1.35 9.70 -39.58 -0.38 -1.73 16
20 C -0.26 -5.87 9.31 -39.14 -0.36 -6.24 16
21 C -0.15 -3.53 9.86 -39.46 -0.39 -3.92 16
22 C 0.08 2.08 6.79 -83.22 -0.56 1.51 16
23 N -0.89 -18.40 8.98 32.75 0.29 -18.11 16
24 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16
25 H 0.12 3.18 6.24 -52.49 -0.33 2.86 16
26 H 0.39 7.56 8.47 -40.82 -0.35 7.21 16
27 H 0.05 0.89 7.88 -51.93 -0.41 0.48 16
28 H 0.05 0.87 7.88 -51.93 -0.41 0.46 16
29 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16
30 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16
31 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16
32 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16
33 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16
34 H 0.08 1.76 6.69 -52.49 -0.35 1.41 16
35 H 0.08 1.74 8.06 -52.49 -0.42 1.31 16
36 H 0.39 7.89 7.05 -40.82 -0.29 7.60 16
37 H 0.37 6.54 8.83 -40.82 -0.36 6.18 16
LS Contribution 313.12 15.07 4.72 4.72
Total: -1.00 -28.81 313.12 -10.01 -38.82
By element:
Atomic # 1 Polarization: 28.06 SS G_CDS: -4.51 Total: 23.55 kcal
Atomic # 6 Polarization: -21.48 SS G_CDS: -5.75 Total: -27.22 kcal
Atomic # 7 Polarization: -54.51 SS G_CDS: 0.56 Total: -53.95 kcal
Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal
Total LS contribution 4.72 Total: 4.72 kcal
Total: -28.81 -10.01 -38.82 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000127181393.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 84.210 kcal
(2) G-P(sol) polarization free energy of solvation -28.813 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.398 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.009 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.822 kcal
(6) G-S(sol) free energy of system = (1) + (5) 45.388 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds