Wall clock time and date at job start Mon Mar 30 2020 07:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30903 * 1 3 3 Si 1.86797 * 120.00062 * 2 1 4 4 H 1.48497 * 109.47010 * 239.99599 * 3 2 1 5 5 H 1.48503 * 109.47012 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47071 * 119.99917 * 3 2 1 7 7 C 1.39887 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99857 * 163.89753 * 7 2 1 9 9 C 1.41029 * 119.99853 * 343.90046 * 7 2 1 10 10 C 1.40665 * 120.26938 * 333.52698 * 9 7 2 11 11 C 1.38003 * 119.77047 * 179.73752 * 10 9 7 12 12 N 1.39857 * 119.84047 * 180.23297 * 11 10 9 13 13 C 1.46500 * 119.99744 * 180.30724 * 12 11 10 14 14 C 1.50704 * 109.46978 * 179.97438 * 13 12 11 15 15 C 1.38231 * 120.00135 * 269.73088 * 14 13 12 16 16 C 1.38238 * 119.99903 * 179.76893 * 15 14 13 17 17 C 1.38235 * 119.99630 * 0.49702 * 16 15 14 18 18 C 1.38232 * 120.00467 * 359.75852 * 17 16 15 19 19 C 1.38238 * 119.99838 * 359.97438 * 18 17 16 20 20 C 1.39603 * 120.32137 * 0.54573 * 11 10 9 21 21 C 1.38061 * 120.54669 * 359.70931 * 20 11 10 22 22 C 1.38730 * 120.22206 * 0.02867 * 21 20 11 23 23 N 1.38868 * 120.16451 * 179.97438 * 22 21 20 24 24 H 0.97006 * 120.00048 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.11464 * 359.97438 * 10 9 7 26 26 H 0.96995 * 120.00217 * 0.31276 * 12 11 10 27 27 H 1.08998 * 109.47765 * 300.00070 * 13 12 11 28 28 H 1.09000 * 109.47430 * 60.00259 * 13 12 11 29 29 H 1.07998 * 120.00008 * 359.97438 * 15 14 13 30 30 H 1.08001 * 120.00114 * 180.23120 * 16 15 14 31 31 H 1.08001 * 119.99837 * 179.72266 * 17 16 15 32 32 H 1.07995 * 120.00412 * 179.97438 * 18 17 16 33 33 H 1.07997 * 120.00151 * 179.97438 * 19 18 17 34 34 H 1.07994 * 119.72533 * 179.73631 * 20 11 10 35 35 H 1.08002 * 119.88702 * 179.97438 * 21 20 11 36 36 H 0.97003 * 120.00164 * 180.02562 * 23 22 21 37 37 H 0.97001 * 119.99872 * 0.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.0968 1.6963 -1.2124 5 1 1.2780 2.7464 0.0006 6 1 3.0968 1.6964 1.2125 7 6 2.0084 -1.2115 0.0005 8 1 3.0566 -1.2299 -0.2589 9 6 1.3447 -2.4087 0.3398 10 6 0.2178 -2.3808 1.1811 11 6 -0.4271 -3.5579 1.5021 12 7 -1.5506 -3.5313 2.3345 13 6 -2.2338 -4.7796 2.6829 14 6 -3.4031 -4.4775 3.5843 15 6 -3.2331 -4.4644 4.9561 16 6 -4.3046 -4.1827 5.7828 17 6 -5.5485 -3.9241 5.2380 18 6 -5.7198 -3.9425 3.8664 19 6 -4.6470 -4.2188 3.0395 20 6 0.0404 -4.7758 1.0051 21 6 1.1484 -4.8191 0.1825 22 6 1.8108 -3.6489 -0.1589 23 7 2.9255 -3.6939 -0.9859 24 1 -0.4850 0.8401 -0.0004 25 1 -0.1438 -1.4410 1.5715 26 1 -1.8775 -2.6864 2.6812 27 1 -2.5908 -5.2643 1.7742 28 1 -1.5392 -5.4421 3.1992 29 1 -2.2623 -4.6710 5.3818 30 1 -4.1709 -4.1687 6.8544 31 1 -6.3867 -3.7084 5.8840 32 1 -6.6917 -3.7409 3.4408 33 1 -4.7809 -4.2335 1.9680 34 1 -0.4691 -5.6916 1.2658 35 1 1.5012 -5.7672 -0.1956 36 1 3.3870 -2.8743 -1.2229 37 1 3.2425 -4.5450 -1.3267 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127181393.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:59 Heat of formation + Delta-G solvation = 45.388465 kcal Electronic energy + Delta-G solvation = -18981.016259 eV Core-core repulsion = 16108.163779 eV Total energy + Delta-G solvation = -2872.852479 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.26950 -37.82926 -35.34284 -33.43351 -32.53185 -30.86461 -30.42279 -29.38983 -26.95035 -24.85329 -24.37024 -22.52348 -21.56208 -20.67613 -19.63231 -17.05571 -16.91850 -16.01041 -15.44319 -15.18715 -15.15947 -14.82231 -14.51731 -14.15360 -13.42820 -13.05001 -12.91072 -12.59680 -12.42262 -12.29184 -11.85862 -11.69759 -11.32794 -11.11536 -10.98808 -10.98309 -10.87775 -10.37813 -9.89555 -9.72478 -9.33108 -9.02846 -8.89721 -8.74778 -7.74779 -7.20308 -6.59558 -5.52006 -4.04890 1.33653 1.42713 2.93988 3.13840 3.16650 3.32953 3.49880 3.76257 4.04983 4.68145 4.83529 4.90330 4.91634 5.02262 5.15853 5.44520 5.50252 5.54003 5.81967 5.91844 5.94257 6.12433 6.13603 6.38206 6.46576 6.50812 6.64914 6.74295 7.02000 7.13405 7.16689 7.33408 7.50811 7.71583 7.89779 8.01604 8.14016 8.47549 8.76549 8.91845 8.95685 9.01972 9.27729 9.35980 10.39701 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.019564 B = 0.004587 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.830479 B = 6102.324117 C = 7162.636778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.077 3.923 3 Si 0.901 3.099 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.466 4.466 8 H 0.071 0.929 9 C 0.097 3.903 10 C -0.200 4.200 11 C 0.177 3.823 12 N -0.758 5.758 13 C 0.177 3.823 14 C -0.092 4.092 15 C -0.103 4.103 16 C -0.125 4.125 17 C -0.123 4.123 18 C -0.125 4.125 19 C -0.102 4.102 20 C -0.256 4.256 21 C -0.152 4.152 22 C 0.085 3.915 23 N -0.889 5.889 24 H 0.275 0.725 25 H 0.117 0.883 26 H 0.389 0.611 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.123 0.877 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.388 0.612 37 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.308 -5.500 6.936 11.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.139 4.139 3 Si 0.727 3.273 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.497 4.497 8 H 0.089 0.911 9 C 0.091 3.909 10 C -0.224 4.224 11 C 0.079 3.921 12 N -0.393 5.393 13 C 0.052 3.948 14 C -0.093 4.093 15 C -0.122 4.122 16 C -0.143 4.143 17 C -0.141 4.141 18 C -0.143 4.143 19 C -0.121 4.121 20 C -0.280 4.280 21 C -0.177 4.177 22 C -0.016 4.016 23 N -0.432 5.432 24 H 0.086 0.914 25 H 0.134 0.866 26 H 0.222 0.778 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.141 0.859 30 H 0.138 0.862 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.217 0.783 37 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -7.608 -5.515 6.968 11.698 hybrid contribution 0.408 1.082 -0.148 1.166 sum -7.200 -4.433 6.820 10.863 Atomic orbital electron populations 1.69874 1.07250 1.28479 1.37103 1.25740 0.94650 1.00636 0.92845 0.86493 0.80119 0.81084 0.79629 1.19353 1.20626 1.19160 1.19096 0.96865 0.91166 1.42566 0.91143 1.16957 0.92638 0.90248 0.91025 1.20472 1.01472 0.95103 1.05390 1.17516 0.87636 0.94187 0.92769 1.44317 1.32003 1.06072 1.56930 1.19910 0.90317 0.88733 0.95807 1.20126 0.95154 0.99761 0.94215 1.21142 0.98920 0.99083 0.93059 1.21133 0.93102 1.00448 0.99653 1.21131 0.97299 1.00480 0.95219 1.21140 0.98828 1.00587 0.93718 1.21162 0.92364 0.98471 1.00091 1.19607 1.03045 0.94386 1.10942 1.19699 0.99020 0.94627 1.04329 1.17864 0.92114 0.93918 0.97707 1.41810 1.33701 1.09120 1.58543 0.91402 0.86570 0.77819 0.92765 0.92783 0.85914 0.86235 0.86390 0.86208 0.85856 0.89714 0.89777 0.78348 0.80121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.19 10.98 55.55 0.61 -20.58 16 2 C 0.08 1.97 5.16 -17.33 -0.09 1.88 16 3 Si 0.90 19.11 29.59 -169.99 -5.03 14.08 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.47 -12.35 8.48 -37.91 -0.32 -12.67 16 8 H 0.07 1.77 6.70 -52.49 -0.35 1.42 16 9 C 0.10 2.59 5.57 -106.65 -0.59 1.99 16 10 C -0.20 -5.26 8.49 -38.75 -0.33 -5.59 16 11 C 0.18 4.18 6.64 -83.77 -0.56 3.63 16 12 N -0.76 -14.92 5.73 -59.81 -0.34 -15.26 16 13 C 0.18 2.88 5.03 -5.19 -0.03 2.85 16 14 C -0.09 -1.30 5.25 -104.62 -0.55 -1.85 16 15 C -0.10 -1.34 9.70 -39.58 -0.38 -1.72 16 16 C -0.13 -1.42 10.05 -39.58 -0.40 -1.82 16 17 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 18 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 19 C -0.10 -1.35 9.70 -39.58 -0.38 -1.73 16 20 C -0.26 -5.87 9.31 -39.14 -0.36 -6.24 16 21 C -0.15 -3.53 9.86 -39.46 -0.39 -3.92 16 22 C 0.08 2.08 6.79 -83.22 -0.56 1.51 16 23 N -0.89 -18.40 8.98 32.75 0.29 -18.11 16 24 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 25 H 0.12 3.18 6.24 -52.49 -0.33 2.86 16 26 H 0.39 7.56 8.47 -40.82 -0.35 7.21 16 27 H 0.05 0.89 7.88 -51.93 -0.41 0.48 16 28 H 0.05 0.87 7.88 -51.93 -0.41 0.46 16 29 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 32 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.08 1.76 6.69 -52.49 -0.35 1.41 16 35 H 0.08 1.74 8.06 -52.49 -0.42 1.31 16 36 H 0.39 7.89 7.05 -40.82 -0.29 7.60 16 37 H 0.37 6.54 8.83 -40.82 -0.36 6.18 16 LS Contribution 313.12 15.07 4.72 4.72 Total: -1.00 -28.81 313.12 -10.01 -38.82 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: -4.51 Total: 23.55 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: -5.75 Total: -27.22 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: 0.56 Total: -53.95 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.81 -10.01 -38.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127181393.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.210 kcal (2) G-P(sol) polarization free energy of solvation -28.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds