Wall clock time and date at job start Mon Mar 30 2020 07:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30903 * 1 3 3 Si 1.86797 * 120.00062 * 2 1 4 4 H 1.48497 * 109.47010 * 239.99599 * 3 2 1 5 5 H 1.48503 * 109.47012 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47071 * 119.99917 * 3 2 1 7 7 C 1.39887 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99857 * 163.89753 * 7 2 1 9 9 C 1.41029 * 119.99853 * 343.90046 * 7 2 1 10 10 C 1.40665 * 120.26938 * 333.52698 * 9 7 2 11 11 C 1.38003 * 119.77047 * 179.73752 * 10 9 7 12 12 N 1.39857 * 119.84047 * 180.23297 * 11 10 9 13 13 C 1.46500 * 119.99744 * 180.30724 * 12 11 10 14 14 C 1.50704 * 109.46978 * 179.97438 * 13 12 11 15 15 C 1.38231 * 120.00135 * 269.73088 * 14 13 12 16 16 C 1.38238 * 119.99903 * 179.76893 * 15 14 13 17 17 C 1.38235 * 119.99630 * 0.49702 * 16 15 14 18 18 C 1.38232 * 120.00467 * 359.75852 * 17 16 15 19 19 C 1.38238 * 119.99838 * 359.97438 * 18 17 16 20 20 C 1.39603 * 120.32137 * 0.54573 * 11 10 9 21 21 C 1.38061 * 120.54669 * 359.70931 * 20 11 10 22 22 C 1.38730 * 120.22206 * 0.02867 * 21 20 11 23 23 N 1.38868 * 120.16451 * 179.97438 * 22 21 20 24 24 H 0.97006 * 120.00048 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.11464 * 359.97438 * 10 9 7 26 26 H 0.96995 * 120.00217 * 0.31276 * 12 11 10 27 27 H 1.08998 * 109.47765 * 300.00070 * 13 12 11 28 28 H 1.09000 * 109.47430 * 60.00259 * 13 12 11 29 29 H 1.07998 * 120.00008 * 359.97438 * 15 14 13 30 30 H 1.08001 * 120.00114 * 180.23120 * 16 15 14 31 31 H 1.08001 * 119.99837 * 179.72266 * 17 16 15 32 32 H 1.07995 * 120.00412 * 179.97438 * 18 17 16 33 33 H 1.07997 * 120.00151 * 179.97438 * 19 18 17 34 34 H 1.07994 * 119.72533 * 179.73631 * 20 11 10 35 35 H 1.08002 * 119.88702 * 179.97438 * 21 20 11 36 36 H 0.97003 * 120.00164 * 180.02562 * 23 22 21 37 37 H 0.97001 * 119.99872 * 0.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.0968 1.6963 -1.2124 5 1 1.2780 2.7464 0.0006 6 1 3.0968 1.6964 1.2125 7 6 2.0084 -1.2115 0.0005 8 1 3.0566 -1.2299 -0.2589 9 6 1.3447 -2.4087 0.3398 10 6 0.2178 -2.3808 1.1811 11 6 -0.4271 -3.5579 1.5021 12 7 -1.5506 -3.5313 2.3345 13 6 -2.2338 -4.7796 2.6829 14 6 -3.4031 -4.4775 3.5843 15 6 -3.2331 -4.4644 4.9561 16 6 -4.3046 -4.1827 5.7828 17 6 -5.5485 -3.9241 5.2380 18 6 -5.7198 -3.9425 3.8664 19 6 -4.6470 -4.2188 3.0395 20 6 0.0404 -4.7758 1.0051 21 6 1.1484 -4.8191 0.1825 22 6 1.8108 -3.6489 -0.1589 23 7 2.9255 -3.6939 -0.9859 24 1 -0.4850 0.8401 -0.0004 25 1 -0.1438 -1.4410 1.5715 26 1 -1.8775 -2.6864 2.6812 27 1 -2.5908 -5.2643 1.7742 28 1 -1.5392 -5.4421 3.1992 29 1 -2.2623 -4.6710 5.3818 30 1 -4.1709 -4.1687 6.8544 31 1 -6.3867 -3.7084 5.8840 32 1 -6.6917 -3.7409 3.4408 33 1 -4.7809 -4.2335 1.9680 34 1 -0.4691 -5.6916 1.2658 35 1 1.5012 -5.7672 -0.1956 36 1 3.3870 -2.8743 -1.2229 37 1 3.2425 -4.5450 -1.3267 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127181393.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:58 Heat of formation + Delta-G solvation = 29.125190 kcal Electronic energy + Delta-G solvation = -18981.721487 eV Core-core repulsion = 16108.163779 eV Total energy + Delta-G solvation = -2873.557708 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.32262 -39.56339 -36.91418 -35.32488 -34.00459 -31.79027 -31.78504 -31.29965 -28.54512 -26.68291 -25.85278 -23.45248 -23.16676 -22.02180 -21.41514 -18.91530 -18.17818 -17.42649 -17.22345 -16.71384 -16.43979 -16.20534 -15.96507 -15.51973 -14.63542 -14.45531 -14.22879 -14.16495 -13.83613 -13.63991 -13.48698 -13.36936 -13.09163 -12.85405 -12.68938 -12.11576 -12.00116 -11.93856 -11.69018 -11.40182 -11.18317 -10.92233 -9.82760 -9.74140 -9.41708 -9.14057 -8.49805 -7.30739 -6.00447 0.36810 0.49716 1.13351 1.41059 1.50200 1.52950 1.65955 2.27476 2.72897 2.92574 3.25140 3.77098 3.81943 3.93683 4.00572 4.16342 4.29282 4.46398 4.60163 4.60946 4.71520 4.82370 4.84849 5.09196 5.16935 5.23728 5.33853 5.42269 5.54436 5.60555 5.67187 5.72431 5.88308 6.05985 6.10545 6.16113 6.27893 6.56727 6.96798 7.05395 7.13136 7.22995 7.47354 7.67637 8.51338 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.019564 B = 0.004587 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.830479 B = 6102.324117 C = 7162.636778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.034 3.966 3 Si 0.974 3.026 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.494 4.494 8 H 0.075 0.925 9 C 0.062 3.938 10 C -0.225 4.225 11 C 0.173 3.827 12 N -0.754 5.754 13 C 0.181 3.819 14 C -0.109 4.109 15 C -0.115 4.115 16 C -0.127 4.127 17 C -0.120 4.120 18 C -0.128 4.128 19 C -0.117 4.117 20 C -0.258 4.258 21 C -0.157 4.157 22 C 0.070 3.930 23 N -0.879 5.879 24 H 0.279 0.721 25 H 0.095 0.905 26 H 0.387 0.613 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.125 0.875 30 H 0.145 0.855 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.120 0.880 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.390 0.610 37 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.960 -5.845 7.791 12.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.179 4.179 3 Si 0.796 3.204 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.526 4.526 8 H 0.093 0.907 9 C 0.057 3.943 10 C -0.250 4.250 11 C 0.073 3.927 12 N -0.388 5.388 13 C 0.057 3.943 14 C -0.110 4.110 15 C -0.134 4.134 16 C -0.145 4.145 17 C -0.137 4.137 18 C -0.145 4.145 19 C -0.136 4.136 20 C -0.282 4.282 21 C -0.181 4.181 22 C -0.032 4.032 23 N -0.423 5.423 24 H 0.089 0.911 25 H 0.113 0.887 26 H 0.220 0.780 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.143 0.857 30 H 0.163 0.837 31 H 0.166 0.834 32 H 0.160 0.840 33 H 0.138 0.862 34 H 0.125 0.875 35 H 0.130 0.870 36 H 0.218 0.782 37 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -8.262 -5.897 7.821 12.814 hybrid contribution 0.512 1.078 -0.357 1.246 sum -7.750 -4.818 7.464 11.790 Atomic orbital electron populations 1.69967 1.08761 1.29476 1.38004 1.26572 0.95380 1.03910 0.92017 0.85378 0.78700 0.76539 0.79751 1.18376 1.20008 1.19006 1.19377 0.97252 0.92079 1.43844 0.90700 1.17347 0.93456 0.91582 0.91909 1.20436 1.02611 0.95219 1.06750 1.17630 0.88391 0.93744 0.92946 1.44412 1.31049 1.07422 1.55897 1.19962 0.91009 0.87119 0.96241 1.19964 0.94664 1.01889 0.94473 1.21275 0.99810 0.99514 0.92782 1.21463 0.92760 0.99395 1.00839 1.21539 0.98042 0.98838 0.95326 1.21447 0.99239 0.99745 0.94114 1.21270 0.92748 0.99187 1.00391 1.19924 1.03038 0.94898 1.10380 1.20054 0.98761 0.95407 1.03911 1.18035 0.93208 0.93660 0.98297 1.41683 1.32652 1.10166 1.57792 0.91087 0.88727 0.78019 0.93011 0.92534 0.85746 0.83746 0.83360 0.83955 0.86171 0.87460 0.86999 0.78205 0.78173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.56 10.98 21.82 0.24 -45.32 16 2 C 0.03 1.76 5.16 85.23 0.44 2.20 16 3 Si 0.97 39.67 29.59 68.60 2.03 41.70 16 4 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 5 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 6 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 7 C -0.49 -26.83 8.48 23.35 0.20 -26.63 16 8 H 0.07 3.83 6.70 -2.91 -0.02 3.81 16 9 C 0.06 3.43 5.57 -21.18 -0.12 3.31 16 10 C -0.23 -12.30 8.49 22.81 0.19 -12.11 16 11 C 0.17 8.32 6.64 38.13 0.25 8.57 16 12 N -0.75 -30.23 5.73 -343.14 -1.97 -32.20 16 13 C 0.18 5.86 5.03 85.63 0.43 6.29 16 14 C -0.11 -3.05 5.25 -19.86 -0.10 -3.15 16 15 C -0.12 -2.85 9.70 22.27 0.22 -2.64 16 16 C -0.13 -2.56 10.05 22.27 0.22 -2.34 16 17 C -0.12 -2.23 10.05 22.27 0.22 -2.01 16 18 C -0.13 -2.66 10.05 22.27 0.22 -2.44 16 19 C -0.12 -3.01 9.70 22.27 0.22 -2.79 16 20 C -0.26 -11.74 9.31 22.56 0.21 -11.53 16 21 C -0.16 -7.14 9.86 22.35 0.22 -6.92 16 22 C 0.07 3.44 6.79 38.97 0.26 3.70 16 23 N -0.88 -35.86 8.98 -50.31 -0.45 -36.31 16 24 H 0.28 14.03 8.30 -92.70 -0.77 13.27 16 25 H 0.09 5.47 6.24 -2.91 -0.02 5.45 16 26 H 0.39 15.56 8.47 -92.71 -0.79 14.77 16 27 H 0.05 1.69 7.88 -2.39 -0.02 1.67 16 28 H 0.06 1.79 7.88 -2.39 -0.02 1.78 16 29 H 0.12 2.94 8.06 -2.91 -0.02 2.92 16 30 H 0.14 2.15 8.06 -2.91 -0.02 2.12 16 31 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 32 H 0.14 2.26 8.06 -2.91 -0.02 2.23 16 33 H 0.12 3.05 8.06 -2.91 -0.02 3.03 16 34 H 0.11 4.30 6.69 -2.91 -0.02 4.28 16 35 H 0.11 4.37 8.06 -2.91 -0.02 4.35 16 36 H 0.39 15.74 7.05 -92.71 -0.65 15.08 16 37 H 0.39 13.11 8.83 -92.71 -0.82 12.29 16 Total: -1.00 -62.95 313.12 1.80 -61.15 By element: Atomic # 1 Polarization: 60.60 SS G_CDS: -1.14 Total: 59.45 kcal Atomic # 6 Polarization: -51.57 SS G_CDS: 3.09 Total: -48.47 kcal Atomic # 7 Polarization: -111.65 SS G_CDS: -2.18 Total: -113.83 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.70 kcal Total: -62.95 1.80 -61.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127181393.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.275 kcal (2) G-P(sol) polarization free energy of solvation -62.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds