Wall clock time and date at job start Mon Mar 30 2020 07:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38296 * 119.92045 * 2 1 4 4 C 1.38094 * 120.07540 * 180.30249 * 3 2 1 5 5 C 1.38937 * 119.91992 * 359.44864 * 4 3 2 6 6 N 1.39681 * 120.07650 * 180.25160 * 5 4 3 7 7 C 1.39864 * 119.99821 * 35.48006 * 6 5 4 8 8 C 1.39626 * 119.84044 * 28.99526 * 7 6 5 9 9 C 1.38040 * 120.54923 * 179.97438 * 8 7 6 10 10 C 1.38752 * 120.22222 * 359.97438 * 9 8 7 11 11 N 1.38834 * 120.16291 * 179.97438 * 10 9 8 12 12 C 1.41576 * 119.67327 * 0.02562 * 10 9 8 13 13 C 1.41031 * 120.26558 * 180.02562 * 12 10 9 14 14 H 1.08005 * 120.00001 * 25.70001 * 13 12 10 15 15 C 1.39876 * 120.00152 * 205.70001 * 13 12 10 16 16 N 1.30907 * 120.00069 * 18.39774 * 15 13 12 17 17 Si 1.86808 * 120.00055 * 198.39633 * 15 13 12 18 18 H 1.48498 * 109.46924 * 89.99859 * 17 15 13 19 19 H 1.48490 * 109.47041 * 210.00061 * 17 15 13 20 20 H 1.48501 * 109.46902 * 330.00246 * 17 15 13 21 21 C 1.38031 * 119.84182 * 208.72096 * 7 6 5 22 22 C 1.38937 * 119.84919 * 0.27927 * 5 4 3 23 23 C 1.38091 * 119.92268 * 359.97438 * 22 5 4 24 24 H 1.08998 * 109.46979 * 270.24892 * 1 2 3 25 25 H 1.09000 * 109.47312 * 30.25056 * 1 2 3 26 26 H 1.09002 * 109.47020 * 150.25105 * 1 2 3 27 27 H 1.07997 * 119.96100 * 0.02984 * 3 2 1 28 28 H 1.07997 * 120.03800 * 179.72299 * 4 3 2 29 29 H 0.96999 * 120.00671 * 215.48087 * 6 5 4 30 30 H 1.08004 * 119.72672 * 0.02562 * 8 7 6 31 31 H 1.08001 * 119.88915 * 179.97438 * 9 8 7 32 32 H 0.96996 * 119.99477 * 359.97438 * 11 10 9 33 33 H 0.96997 * 119.99977 * 179.97438 * 11 10 9 34 34 H 0.96999 * 120.00011 * 179.97438 * 16 15 13 35 35 H 1.07999 * 120.11753 * 359.97438 * 21 7 6 36 36 H 1.07995 * 120.03775 * 180.02562 * 22 5 4 37 37 H 1.08001 * 119.96645 * 179.97438 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1986 0.0000 4 6 3.5778 1.2024 -0.0063 5 6 4.2741 0.0001 -0.0011 6 7 5.6709 0.0001 -0.0021 7 6 6.3707 0.9898 0.6957 8 6 5.8015 1.5757 1.8280 9 6 6.4794 2.5534 2.5280 10 6 7.7377 2.9647 2.1123 11 7 8.4182 3.9485 2.8170 12 6 8.3237 2.3769 0.9654 13 6 9.6022 2.7851 0.5321 14 1 10.3037 3.2037 1.2386 15 6 9.9618 2.6478 -0.8126 16 7 9.0362 2.4906 -1.7249 17 14 11.7629 2.6889 -1.3068 18 1 12.3162 1.3112 -1.2756 19 1 11.8870 3.2412 -2.6796 20 1 12.5170 3.5468 -0.3579 21 6 7.6231 1.3786 0.2649 22 6 3.5778 -1.2022 0.0046 23 6 2.1969 -1.1986 0.0056 24 1 -0.3633 0.0045 1.0276 25 1 -0.3634 0.8877 -0.5177 26 1 -0.3633 -0.8922 -0.5099 27 1 1.6549 2.1328 0.0005 28 1 4.1158 2.1388 -0.0108 29 1 6.1556 -0.6862 -0.4868 30 1 4.8230 1.2608 2.1595 31 1 6.0289 2.9998 3.4022 32 1 8.0139 4.3503 3.6018 33 1 9.2978 4.2339 2.5245 34 1 9.2856 2.3957 -2.6575 35 1 8.0624 0.9198 -0.6085 36 1 4.1160 -2.1385 0.0091 37 1 1.6550 -2.1328 0.0096 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127210302.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:07 Heat of formation + Delta-G solvation = 40.927574 kcal Electronic energy + Delta-G solvation = -19277.258016 eV Core-core repulsion = 16404.212098 eV Total energy + Delta-G solvation = -2873.045918 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.32376 -37.80282 -35.46327 -33.56116 -32.51142 -30.63512 -30.50539 -29.50999 -27.06535 -25.12055 -24.86451 -22.37186 -21.25782 -20.83510 -19.74151 -17.43008 -16.78004 -15.88759 -15.54881 -15.35472 -14.86749 -14.71048 -14.40382 -13.56874 -13.45719 -13.02074 -12.90970 -12.62519 -12.39954 -12.09878 -11.87272 -11.78546 -11.48630 -11.27131 -11.11276 -11.02073 -10.65491 -10.46061 -10.22263 -10.01601 -9.46477 -9.12330 -8.78132 -8.52764 -7.41611 -7.27272 -6.70856 -5.78749 -4.15159 1.81153 1.84229 2.82817 3.09668 3.11613 3.19585 3.27292 3.97147 4.20028 4.25970 4.70659 5.16851 5.21903 5.29265 5.43151 5.54472 5.72546 5.74014 5.82208 5.92032 6.12514 6.17150 6.34422 6.42598 6.54097 6.75729 6.86897 7.00499 7.00900 7.05081 7.20292 7.34675 7.37110 7.62311 7.75963 7.88031 7.99327 8.32881 8.56656 8.66054 8.81212 8.86069 9.11335 9.18849 10.28140 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.026112 B = 0.004669 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.056239 B = 5995.094814 C = 6654.003331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.145 4.145 3 C -0.090 4.090 4 C -0.153 4.153 5 C 0.206 3.794 6 N -0.689 5.689 7 C 0.136 3.864 8 C -0.219 4.219 9 C -0.162 4.162 10 C 0.103 3.897 11 N -0.885 5.885 12 C 0.086 3.914 13 C -0.466 4.466 14 H 0.073 0.927 15 C 0.078 3.922 16 N -0.797 5.797 17 Si 0.902 3.098 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.265 1.265 21 C -0.175 4.175 22 C -0.182 4.182 23 C -0.090 4.090 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.115 0.885 28 H 0.128 0.872 29 H 0.398 0.602 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.376 0.624 33 H 0.390 0.610 34 H 0.277 0.723 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.533 -3.582 1.689 9.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.147 4.147 3 C -0.109 4.109 4 C -0.175 4.175 5 C 0.105 3.895 6 N -0.311 5.311 7 C 0.041 3.959 8 C -0.242 4.242 9 C -0.186 4.186 10 C 0.002 3.998 11 N -0.427 5.427 12 C 0.081 3.919 13 C -0.497 4.497 14 H 0.091 0.909 15 C -0.139 4.139 16 N -0.423 5.423 17 Si 0.727 3.273 18 H -0.195 1.195 19 H -0.206 1.206 20 H -0.189 1.189 21 C -0.199 4.199 22 C -0.204 4.204 23 C -0.109 4.109 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.133 0.867 28 H 0.146 0.854 29 H 0.232 0.768 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.201 0.799 33 H 0.219 0.781 34 H 0.088 0.912 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.573 -3.546 1.448 9.389 hybrid contribution 1.208 0.054 -0.359 1.261 sum -7.365 -3.492 1.089 8.223 Atomic orbital electron populations 1.20632 0.92005 1.01854 1.01428 1.19627 0.95433 0.93240 1.06410 1.20783 0.93603 0.97077 0.99390 1.21103 0.93894 0.97898 1.04582 1.17790 0.84018 0.93147 0.94529 1.42075 1.01781 1.31683 1.55568 1.17434 0.93255 0.92756 0.92440 1.19872 1.00888 1.05170 0.98260 1.19768 0.95113 1.02319 1.01387 1.17944 0.92159 0.93304 0.96412 1.41865 1.22254 1.45476 1.33132 1.16977 0.93352 0.91267 0.90304 1.19122 0.98871 1.38241 0.93471 0.90894 1.25756 0.98819 0.92854 0.96450 1.69874 1.34206 1.36240 1.02006 0.86417 0.83336 0.79298 0.78208 1.19524 1.20558 1.18886 1.20641 0.95118 1.00724 1.03376 1.20809 0.94259 0.96633 1.08685 1.20650 0.93391 0.96989 0.99868 0.92140 0.92238 0.92354 0.86681 0.85437 0.76754 0.89135 0.89333 0.79866 0.78123 0.91228 0.86428 0.86616 0.86837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.09 10.01 36.01 0.36 -0.73 16 2 C -0.15 -2.05 5.88 -104.58 -0.62 -2.66 16 3 C -0.09 -1.39 9.69 -39.61 -0.38 -1.78 16 4 C -0.15 -2.79 8.03 -39.38 -0.32 -3.11 16 5 C 0.21 3.77 5.74 -83.76 -0.48 3.29 16 6 N -0.69 -13.63 5.44 -8.42 -0.05 -13.68 16 7 C 0.14 3.13 5.92 -83.75 -0.50 2.63 16 8 C -0.22 -4.94 8.15 -39.14 -0.32 -5.26 16 9 C -0.16 -3.62 9.86 -39.46 -0.39 -4.01 16 10 C 0.10 2.43 6.79 -83.23 -0.56 1.86 16 11 N -0.89 -17.51 8.98 32.75 0.29 -17.22 16 12 C 0.09 2.23 5.57 -106.66 -0.59 1.63 16 13 C -0.47 -11.92 8.48 -37.91 -0.32 -12.24 16 14 H 0.07 1.77 6.70 -52.48 -0.35 1.42 16 15 C 0.08 1.93 5.11 -17.33 -0.09 1.84 16 16 N -0.80 -20.52 11.09 55.54 0.62 -19.90 16 17 Si 0.90 18.57 29.60 -169.99 -5.03 13.54 16 18 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 19 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 20 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 21 C -0.18 -4.43 8.56 -38.75 -0.33 -4.77 16 22 C -0.18 -2.86 9.97 -39.38 -0.39 -3.25 16 23 C -0.09 -1.27 9.69 -39.61 -0.38 -1.66 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 26 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 27 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 28 H 0.13 2.57 7.01 -52.49 -0.37 2.20 16 29 H 0.40 7.19 8.91 -40.82 -0.36 6.83 16 30 H 0.09 1.96 6.72 -52.48 -0.35 1.61 16 31 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 32 H 0.38 6.26 8.83 -40.82 -0.36 5.90 16 33 H 0.39 7.57 7.04 -40.82 -0.29 7.29 16 34 H 0.28 6.58 8.30 -40.82 -0.34 6.25 16 35 H 0.12 3.09 6.29 -52.49 -0.33 2.76 16 36 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 37 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 310.21 15.07 4.67 4.67 Total: -1.00 -27.63 310.21 -9.31 -36.94 By element: Atomic # 1 Polarization: 28.37 SS G_CDS: -4.50 Total: 23.87 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: -5.32 Total: -28.22 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: 0.86 Total: -50.79 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.63 -9.31 -36.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127210302.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.865 kcal (2) G-P(sol) polarization free energy of solvation -27.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds