Wall clock time and date at job start Mon Mar 30 2020 07:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38296 * 119.92045 * 2 1 4 4 C 1.38094 * 120.07540 * 180.30249 * 3 2 1 5 5 C 1.38937 * 119.91992 * 359.44864 * 4 3 2 6 6 N 1.39681 * 120.07650 * 180.25160 * 5 4 3 7 7 C 1.39864 * 119.99821 * 35.48006 * 6 5 4 8 8 C 1.39626 * 119.84044 * 28.99526 * 7 6 5 9 9 C 1.38040 * 120.54923 * 179.97438 * 8 7 6 10 10 C 1.38752 * 120.22222 * 359.97438 * 9 8 7 11 11 N 1.38834 * 120.16291 * 179.97438 * 10 9 8 12 12 C 1.41576 * 119.67327 * 0.02562 * 10 9 8 13 13 C 1.41031 * 120.26558 * 180.02562 * 12 10 9 14 14 H 1.08005 * 120.00001 * 25.70001 * 13 12 10 15 15 C 1.39876 * 120.00152 * 205.70001 * 13 12 10 16 16 N 1.30907 * 120.00069 * 18.39774 * 15 13 12 17 17 Si 1.86808 * 120.00055 * 198.39633 * 15 13 12 18 18 H 1.48498 * 109.46924 * 89.99859 * 17 15 13 19 19 H 1.48490 * 109.47041 * 210.00061 * 17 15 13 20 20 H 1.48501 * 109.46902 * 330.00246 * 17 15 13 21 21 C 1.38031 * 119.84182 * 208.72096 * 7 6 5 22 22 C 1.38937 * 119.84919 * 0.27927 * 5 4 3 23 23 C 1.38091 * 119.92268 * 359.97438 * 22 5 4 24 24 H 1.08998 * 109.46979 * 270.24892 * 1 2 3 25 25 H 1.09000 * 109.47312 * 30.25056 * 1 2 3 26 26 H 1.09002 * 109.47020 * 150.25105 * 1 2 3 27 27 H 1.07997 * 119.96100 * 0.02984 * 3 2 1 28 28 H 1.07997 * 120.03800 * 179.72299 * 4 3 2 29 29 H 0.96999 * 120.00671 * 215.48087 * 6 5 4 30 30 H 1.08004 * 119.72672 * 0.02562 * 8 7 6 31 31 H 1.08001 * 119.88915 * 179.97438 * 9 8 7 32 32 H 0.96996 * 119.99477 * 359.97438 * 11 10 9 33 33 H 0.96997 * 119.99977 * 179.97438 * 11 10 9 34 34 H 0.96999 * 120.00011 * 179.97438 * 16 15 13 35 35 H 1.07999 * 120.11753 * 359.97438 * 21 7 6 36 36 H 1.07995 * 120.03775 * 180.02562 * 22 5 4 37 37 H 1.08001 * 119.96645 * 179.97438 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1986 0.0000 4 6 3.5778 1.2024 -0.0063 5 6 4.2741 0.0001 -0.0011 6 7 5.6709 0.0001 -0.0021 7 6 6.3707 0.9898 0.6957 8 6 5.8015 1.5757 1.8280 9 6 6.4794 2.5534 2.5280 10 6 7.7377 2.9647 2.1123 11 7 8.4182 3.9485 2.8170 12 6 8.3237 2.3769 0.9654 13 6 9.6022 2.7851 0.5321 14 1 10.3037 3.2037 1.2386 15 6 9.9618 2.6478 -0.8126 16 7 9.0362 2.4906 -1.7249 17 14 11.7629 2.6889 -1.3068 18 1 12.3162 1.3112 -1.2756 19 1 11.8870 3.2412 -2.6796 20 1 12.5170 3.5468 -0.3579 21 6 7.6231 1.3786 0.2649 22 6 3.5778 -1.2022 0.0046 23 6 2.1969 -1.1986 0.0056 24 1 -0.3633 0.0045 1.0276 25 1 -0.3634 0.8877 -0.5177 26 1 -0.3633 -0.8922 -0.5099 27 1 1.6549 2.1328 0.0005 28 1 4.1158 2.1388 -0.0108 29 1 6.1556 -0.6862 -0.4868 30 1 4.8230 1.2608 2.1595 31 1 6.0289 2.9998 3.4022 32 1 8.0139 4.3503 3.6018 33 1 9.2978 4.2339 2.5245 34 1 9.2856 2.3957 -2.6575 35 1 8.0624 0.9198 -0.6085 36 1 4.1160 -2.1385 0.0091 37 1 1.6550 -2.1328 0.0096 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127210302.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:06 Heat of formation + Delta-G solvation = 26.022857 kcal Electronic energy + Delta-G solvation = -19277.904333 eV Core-core repulsion = 16404.212098 eV Total energy + Delta-G solvation = -2873.692235 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.72001 -39.43641 -36.97163 -35.39972 -34.02665 -31.96364 -31.77925 -31.32911 -28.61477 -26.85480 -26.25181 -23.71996 -22.95808 -22.24667 -21.36169 -19.15244 -18.32255 -17.59099 -17.21663 -16.94913 -16.41736 -16.09641 -15.74325 -14.89360 -14.65292 -14.39032 -14.29427 -14.24285 -14.09484 -13.71328 -13.38914 -13.07374 -12.95754 -12.79699 -12.76970 -12.29697 -12.12165 -11.96880 -11.80220 -11.67635 -11.26310 -10.96409 -10.26610 -9.77274 -9.27425 -8.77821 -8.53804 -7.47945 -6.05178 0.53803 0.58179 1.05817 1.40454 1.42262 1.51855 1.57291 2.24701 2.71272 2.85081 3.00521 3.68058 3.85796 4.05719 4.15798 4.25538 4.49209 4.56472 4.63044 4.74161 4.83296 4.96342 4.97245 5.15427 5.19894 5.21097 5.30051 5.39209 5.48587 5.55520 5.69057 5.80821 5.83598 5.95439 6.05138 6.14781 6.28051 6.49183 6.89406 6.95359 7.02396 7.08984 7.35062 7.58326 8.45498 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.026112 B = 0.004669 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.056239 B = 5995.094814 C = 6654.003331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.137 4.137 3 C -0.096 4.096 4 C -0.174 4.174 5 C 0.176 3.824 6 N -0.692 5.692 7 C 0.139 3.861 8 C -0.219 4.219 9 C -0.167 4.167 10 C 0.092 3.908 11 N -0.874 5.874 12 C 0.054 3.946 13 C -0.493 4.493 14 H 0.078 0.922 15 C 0.036 3.964 16 N -0.832 5.832 17 Si 0.974 3.026 18 H -0.268 1.268 19 H -0.276 1.276 20 H -0.256 1.256 21 C -0.199 4.199 22 C -0.179 4.179 23 C -0.089 4.089 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.133 0.867 28 H 0.096 0.904 29 H 0.401 0.599 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.393 0.607 33 H 0.392 0.608 34 H 0.280 0.720 35 H 0.098 0.902 36 H 0.131 0.869 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.164 -4.315 2.207 11.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.138 4.138 3 C -0.114 4.114 4 C -0.196 4.196 5 C 0.077 3.923 6 N -0.317 5.317 7 C 0.043 3.957 8 C -0.242 4.242 9 C -0.191 4.191 10 C -0.011 4.011 11 N -0.417 5.417 12 C 0.049 3.951 13 C -0.523 4.523 14 H 0.096 0.904 15 C -0.177 4.177 16 N -0.460 5.460 17 Si 0.796 3.204 18 H -0.193 1.193 19 H -0.201 1.201 20 H -0.180 1.180 21 C -0.223 4.223 22 C -0.201 4.201 23 C -0.107 4.107 24 H 0.092 0.908 25 H 0.087 0.913 26 H 0.095 0.905 27 H 0.151 0.849 28 H 0.115 0.885 29 H 0.237 0.763 30 H 0.117 0.883 31 H 0.132 0.868 32 H 0.221 0.779 33 H 0.221 0.779 34 H 0.091 0.909 35 H 0.116 0.884 36 H 0.149 0.851 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.243 -4.274 1.987 11.276 hybrid contribution 1.481 0.235 -0.492 1.579 sum -8.762 -4.039 1.495 9.763 Atomic orbital electron populations 1.20710 0.89051 1.03353 1.02704 1.20105 0.97559 0.92471 1.03689 1.21027 0.92526 0.98847 0.99047 1.21008 0.95196 0.96729 1.06645 1.18026 0.83175 0.94303 0.96822 1.41985 1.02629 1.31195 1.55844 1.17478 0.92721 0.92980 0.92571 1.20027 1.01117 1.05091 0.97965 1.20074 0.94803 1.02139 1.02076 1.18075 0.92748 0.94001 0.96229 1.41737 1.22135 1.44579 1.33295 1.17350 0.94127 0.92011 0.91628 1.19389 0.99318 1.39375 0.94249 0.90394 1.26575 1.02991 0.92063 0.96112 1.69963 1.36298 1.37313 1.02394 0.85318 0.77831 0.79268 0.77933 1.19349 1.20094 1.17984 1.20588 0.96491 1.01779 1.03442 1.21058 0.95244 0.96190 1.07598 1.21091 0.92741 0.98591 0.98285 0.90811 0.91289 0.90455 0.84949 0.88532 0.76344 0.88339 0.86754 0.77932 0.77915 0.90928 0.88419 0.85073 0.83349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.73 10.01 71.24 0.71 -1.02 16 2 C -0.14 -3.43 5.88 -19.84 -0.12 -3.55 16 3 C -0.10 -2.85 9.69 22.25 0.22 -2.63 16 4 C -0.17 -6.44 8.03 22.40 0.18 -6.26 16 5 C 0.18 6.46 5.74 38.23 0.22 6.68 16 6 N -0.69 -28.40 5.44 -180.54 -0.98 -29.39 16 7 C 0.14 6.63 5.92 38.15 0.23 6.86 16 8 C -0.22 -10.05 8.15 22.56 0.18 -9.87 16 9 C -0.17 -7.47 9.86 22.35 0.22 -7.25 16 10 C 0.09 4.39 6.79 38.98 0.26 4.66 16 11 N -0.87 -34.32 8.98 -50.31 -0.45 -34.77 16 12 C 0.05 2.89 5.57 -21.18 -0.12 2.78 16 13 C -0.49 -25.92 8.48 23.35 0.20 -25.72 16 14 H 0.08 3.86 6.70 -2.91 -0.02 3.84 16 15 C 0.04 1.82 5.11 85.23 0.44 2.25 16 16 N -0.83 -44.58 11.09 21.82 0.24 -44.34 16 17 Si 0.97 38.73 29.60 68.60 2.03 40.76 16 18 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 19 H -0.28 -10.65 7.11 99.48 0.71 -9.95 16 20 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 21 C -0.20 -10.61 8.56 22.81 0.20 -10.41 16 22 C -0.18 -5.36 9.97 22.40 0.22 -5.14 16 23 C -0.09 -2.21 9.69 22.25 0.22 -2.00 16 24 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.07 1.08 8.09 -2.39 -0.02 1.06 16 26 H 0.08 1.07 8.08 -2.39 -0.02 1.05 16 27 H 0.13 3.36 8.06 -2.91 -0.02 3.33 16 28 H 0.10 4.11 7.01 -2.91 -0.02 4.09 16 29 H 0.40 15.20 8.91 -92.71 -0.83 14.38 16 30 H 0.10 4.29 6.72 -2.91 -0.02 4.27 16 31 H 0.11 4.42 8.06 -2.91 -0.02 4.40 16 32 H 0.39 12.63 8.83 -92.71 -0.82 11.81 16 33 H 0.39 15.19 7.04 -92.71 -0.65 14.54 16 34 H 0.28 13.84 8.30 -92.71 -0.77 13.07 16 35 H 0.10 5.48 6.29 -2.91 -0.02 5.47 16 36 H 0.13 3.44 8.06 -2.91 -0.02 3.42 16 37 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -61.56 310.21 2.92 -58.64 By element: Atomic # 1 Polarization: 60.89 SS G_CDS: -1.18 Total: 59.72 kcal Atomic # 6 Polarization: -53.88 SS G_CDS: 3.26 Total: -50.62 kcal Atomic # 7 Polarization: -107.31 SS G_CDS: -1.19 Total: -108.50 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 2.03 Total: 40.76 kcal Total: -61.56 2.92 -58.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127210302.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.664 kcal (2) G-P(sol) polarization free energy of solvation -61.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds