Wall clock time and date at job start Mon Mar 30 2020 07:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38323 * 119.96287 * 2 1 4 4 C 1.38266 * 120.15368 * 179.97438 * 3 2 1 5 5 C 1.38119 * 120.08083 * 359.97438 * 4 3 2 6 6 C 1.38919 * 119.91943 * 0.04266 * 5 4 3 7 7 N 1.39674 * 120.07558 * 180.02562 * 6 5 4 8 8 C 1.39868 * 119.99990 * 31.96740 * 7 6 5 9 9 C 1.39620 * 119.84160 * 25.81443 * 8 7 6 10 10 C 1.38038 * 120.54709 * 179.97438 * 9 8 7 11 11 C 1.38748 * 120.22137 * 359.97438 * 10 9 8 12 12 N 1.38837 * 120.15948 * 180.02562 * 11 10 9 13 13 C 1.41569 * 119.67781 * 0.02562 * 11 10 9 14 14 C 1.41037 * 120.26458 * 180.02562 * 13 11 10 15 15 H 1.07994 * 120.00512 * 26.69570 * 14 13 11 16 16 C 1.39880 * 119.99671 * 206.68960 * 14 13 11 17 17 N 1.30912 * 120.00084 * 14.45046 * 16 14 13 18 18 Si 1.86802 * 119.99862 * 194.44251 * 16 14 13 19 19 H 1.48498 * 109.47078 * 60.00492 * 18 16 14 20 20 H 1.48504 * 109.46841 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47095 * 300.00542 * 18 16 14 22 22 C 1.38036 * 119.83625 * 205.54149 * 8 7 6 23 23 C 1.38066 * 119.96449 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.47151 * 270.02725 * 1 2 3 25 25 H 1.09003 * 109.46993 * 30.02140 * 1 2 3 26 26 H 1.08992 * 109.46831 * 150.02036 * 1 2 3 27 27 H 1.08004 * 119.91682 * 359.95330 * 3 2 1 28 28 H 1.08005 * 119.95838 * 179.97438 * 4 3 2 29 29 H 1.07997 * 120.03763 * 180.02562 * 5 4 3 30 30 H 0.97003 * 120.00360 * 211.96085 * 7 6 5 31 31 H 1.08001 * 119.72450 * 359.97438 * 9 8 7 32 32 H 1.08003 * 119.89023 * 180.02562 * 10 9 8 33 33 H 0.96993 * 120.00130 * 359.97438 * 12 11 10 34 34 H 0.97006 * 119.99849 * 179.97438 * 12 11 10 35 35 H 0.96997 * 119.99749 * 179.97438 * 17 16 14 36 36 H 1.07995 * 120.11878 * 0.02562 * 22 8 7 37 37 H 1.08011 * 120.03734 * 359.74369 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1984 0.0000 4 6 3.5805 1.2030 0.0005 5 6 4.2768 0.0101 0.0016 6 6 3.5862 -1.1953 0.0012 7 7 4.2870 -2.4035 0.0029 8 6 5.5259 -2.4925 0.6460 9 6 5.8250 -1.6277 1.7005 10 6 7.0429 -1.7031 2.3458 11 6 7.9849 -2.6426 1.9520 12 7 9.2093 -2.7177 2.6023 13 6 7.6916 -3.5242 0.8838 14 6 8.6398 -4.4842 0.4737 15 1 9.3695 -4.8574 1.1770 16 6 8.6352 -4.9531 -0.8442 17 7 7.9562 -4.3149 -1.7637 18 14 9.5980 -6.4900 -1.2921 19 1 9.0914 -7.6397 -0.5005 20 1 9.4315 -6.7738 -2.7402 21 1 11.0367 -6.2778 -0.9918 22 6 6.4447 -3.4387 0.2387 23 6 2.1966 -1.1961 0.0005 24 1 -0.3633 0.0005 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3633 -0.8901 -0.5135 27 1 1.6559 2.1326 -0.0008 28 1 4.1168 2.1405 0.0001 29 1 5.3567 0.0145 0.0024 30 1 3.9145 -3.1809 -0.4419 31 1 5.0974 -0.8936 2.0139 32 1 7.2630 -1.0291 3.1605 33 1 9.4080 -2.1123 3.3336 34 1 9.8660 -3.3756 2.3252 35 1 7.9533 -4.6399 -2.6776 36 1 6.2083 -4.1086 -0.5747 37 1 1.6566 -2.1315 0.0051 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127210545.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:10 Heat of formation + Delta-G solvation = 41.533436 kcal Electronic energy + Delta-G solvation = -19302.004397 eV Core-core repulsion = 16428.984751 eV Total energy + Delta-G solvation = -2873.019646 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.36104 -37.79742 -35.41206 -33.55514 -32.35093 -31.89863 -29.56655 -29.13706 -26.62478 -26.14860 -24.90384 -22.15420 -21.09537 -21.03072 -19.55738 -17.26054 -16.73541 -15.92356 -15.71433 -15.33984 -15.14396 -14.70107 -14.38678 -13.59465 -13.48196 -12.90685 -12.77055 -12.60477 -12.38807 -12.11197 -11.88776 -11.82201 -11.48172 -11.26409 -11.09030 -10.96468 -10.71061 -10.46359 -10.32348 -10.02407 -9.48624 -9.14724 -8.86576 -8.34284 -7.42121 -7.28785 -6.67502 -5.77929 -4.16520 1.80049 1.87519 2.84157 3.08681 3.10882 3.20001 3.27846 3.97476 4.18543 4.25360 4.72730 5.12706 5.20625 5.28861 5.49495 5.58839 5.68579 5.73194 5.83337 5.90509 6.03129 6.16318 6.33626 6.42579 6.53686 6.84883 6.86795 6.99996 7.00543 7.04008 7.20922 7.34903 7.36473 7.62149 7.76368 7.86873 7.99781 8.32468 8.55984 8.65067 8.81658 8.86229 9.11105 9.18442 10.30435 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.025243 B = 0.004746 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.939881 B = 5898.365425 C = 6629.335322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.060 4.060 3 C -0.177 4.177 4 C -0.087 4.087 5 C -0.166 4.166 6 C 0.214 3.786 7 N -0.684 5.684 8 C 0.134 3.866 9 C -0.221 4.221 10 C -0.162 4.162 11 C 0.104 3.896 12 N -0.885 5.885 13 C 0.085 3.915 14 C -0.465 4.465 15 H 0.072 0.928 16 C 0.076 3.924 17 N -0.802 5.802 18 Si 0.905 3.095 19 H -0.266 1.266 20 H -0.280 1.280 21 H -0.268 1.268 22 C -0.173 4.173 23 C -0.188 4.188 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.111 0.889 28 H 0.116 0.884 29 H 0.129 0.871 30 H 0.398 0.602 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.376 0.624 34 H 0.390 0.610 35 H 0.277 0.723 36 H 0.122 0.878 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.671 5.036 1.819 9.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.060 4.060 3 C -0.197 4.197 4 C -0.105 4.105 5 C -0.188 4.188 6 C 0.112 3.888 7 N -0.306 5.306 8 C 0.039 3.961 9 C -0.243 4.243 10 C -0.186 4.186 11 C 0.002 3.998 12 N -0.427 5.427 13 C 0.080 3.920 14 C -0.496 4.496 15 H 0.090 0.910 16 C -0.140 4.140 17 N -0.429 5.429 18 Si 0.730 3.270 19 H -0.191 1.191 20 H -0.205 1.205 21 H -0.193 1.193 22 C -0.196 4.196 23 C -0.210 4.210 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.129 0.871 28 H 0.134 0.866 29 H 0.147 0.853 30 H 0.233 0.767 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.201 0.799 34 H 0.219 0.781 35 H 0.088 0.912 36 H 0.139 0.861 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.677 5.050 1.573 9.323 hybrid contribution 0.707 -0.963 -0.340 1.242 sum -6.970 4.087 1.233 8.174 Atomic orbital electron populations 1.20744 0.91876 1.02187 1.01871 1.19544 0.95226 0.92795 0.98485 1.20701 0.94140 0.96821 1.08059 1.20876 0.93954 0.97314 0.98406 1.21113 1.00776 0.91143 1.05750 1.17787 0.90402 0.86766 0.93798 1.42135 1.20085 1.09542 1.58792 1.17469 0.85100 0.99632 0.93892 1.19918 0.98391 1.05532 1.00487 1.19768 0.94783 1.01449 1.02649 1.17962 0.86799 0.97207 0.97786 1.41868 1.17100 1.43261 1.40494 1.16974 0.92210 0.92019 0.90814 1.19093 1.14403 1.20728 0.95353 0.91004 1.25758 0.95054 0.97011 0.96215 1.69843 1.35078 1.35545 1.02406 0.86437 0.80463 0.82349 0.77784 1.19110 1.20539 1.19295 1.20694 0.92051 1.02501 1.04398 1.20622 0.92448 0.97706 1.10246 0.91563 0.91929 0.91943 0.87101 0.86637 0.85262 0.76685 0.88841 0.89298 0.79860 0.78125 0.91221 0.86062 0.86689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.01 36.01 0.36 -0.81 16 2 C -0.06 -0.85 5.88 -104.65 -0.62 -1.47 16 3 C -0.18 -2.52 9.70 -39.54 -0.38 -2.90 16 4 C -0.09 -1.34 10.04 -39.61 -0.40 -1.74 16 5 C -0.17 -3.03 7.75 -39.37 -0.31 -3.34 16 6 C 0.21 3.94 5.90 -83.77 -0.49 3.44 16 7 N -0.68 -13.60 5.46 -8.42 -0.05 -13.65 16 8 C 0.13 3.08 6.03 -83.75 -0.51 2.58 16 9 C -0.22 -4.96 7.88 -39.14 -0.31 -5.27 16 10 C -0.16 -3.63 9.86 -39.47 -0.39 -4.02 16 11 C 0.10 2.44 6.79 -83.23 -0.56 1.88 16 12 N -0.89 -17.48 8.98 32.75 0.29 -17.18 16 13 C 0.09 2.20 5.57 -106.66 -0.59 1.60 16 14 C -0.46 -11.89 8.47 -37.91 -0.32 -12.21 16 15 H 0.07 1.74 6.71 -52.49 -0.35 1.39 16 16 C 0.08 1.87 5.19 -17.33 -0.09 1.78 16 17 N -0.80 -20.67 10.92 55.54 0.61 -20.06 16 18 Si 0.90 18.60 29.58 -169.99 -5.03 13.57 16 19 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 20 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 22 C -0.17 -4.39 8.54 -38.75 -0.33 -4.72 16 23 C -0.19 -2.99 9.61 -39.38 -0.38 -3.37 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 26 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 27 H 0.11 1.30 8.06 -52.48 -0.42 0.87 16 28 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 29 H 0.13 2.60 6.61 -52.49 -0.35 2.25 16 30 H 0.40 7.24 8.89 -40.82 -0.36 6.88 16 31 H 0.09 2.01 6.33 -52.49 -0.33 1.68 16 32 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 33 H 0.38 6.25 8.83 -40.82 -0.36 5.89 16 34 H 0.39 7.55 7.06 -40.82 -0.29 7.26 16 35 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 36 H 0.12 3.19 6.21 -52.49 -0.33 2.87 16 37 H 0.12 1.65 8.06 -52.48 -0.42 1.22 16 LS Contribution 308.96 15.07 4.66 4.66 Total: -1.00 -27.69 308.96 -9.29 -36.98 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: -4.46 Total: 24.24 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: -5.32 Total: -28.55 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: 0.85 Total: -50.89 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.69 -9.29 -36.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127210545.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.511 kcal (2) G-P(sol) polarization free energy of solvation -27.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds