Wall clock time and date at job start Mon Mar 30 2020 07:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38323 * 119.96287 * 2 1 4 4 C 1.38266 * 120.15368 * 179.97438 * 3 2 1 5 5 C 1.38119 * 120.08083 * 359.97438 * 4 3 2 6 6 C 1.38919 * 119.91943 * 0.04266 * 5 4 3 7 7 N 1.39674 * 120.07558 * 180.02562 * 6 5 4 8 8 C 1.39868 * 119.99990 * 31.96740 * 7 6 5 9 9 C 1.39620 * 119.84160 * 25.81443 * 8 7 6 10 10 C 1.38038 * 120.54709 * 179.97438 * 9 8 7 11 11 C 1.38748 * 120.22137 * 359.97438 * 10 9 8 12 12 N 1.38837 * 120.15948 * 180.02562 * 11 10 9 13 13 C 1.41569 * 119.67781 * 0.02562 * 11 10 9 14 14 C 1.41037 * 120.26458 * 180.02562 * 13 11 10 15 15 H 1.07994 * 120.00512 * 26.69570 * 14 13 11 16 16 C 1.39880 * 119.99671 * 206.68960 * 14 13 11 17 17 N 1.30912 * 120.00084 * 14.45046 * 16 14 13 18 18 Si 1.86802 * 119.99862 * 194.44251 * 16 14 13 19 19 H 1.48498 * 109.47078 * 60.00492 * 18 16 14 20 20 H 1.48504 * 109.46841 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47095 * 300.00542 * 18 16 14 22 22 C 1.38036 * 119.83625 * 205.54149 * 8 7 6 23 23 C 1.38066 * 119.96449 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.47151 * 270.02725 * 1 2 3 25 25 H 1.09003 * 109.46993 * 30.02140 * 1 2 3 26 26 H 1.08992 * 109.46831 * 150.02036 * 1 2 3 27 27 H 1.08004 * 119.91682 * 359.95330 * 3 2 1 28 28 H 1.08005 * 119.95838 * 179.97438 * 4 3 2 29 29 H 1.07997 * 120.03763 * 180.02562 * 5 4 3 30 30 H 0.97003 * 120.00360 * 211.96085 * 7 6 5 31 31 H 1.08001 * 119.72450 * 359.97438 * 9 8 7 32 32 H 1.08003 * 119.89023 * 180.02562 * 10 9 8 33 33 H 0.96993 * 120.00130 * 359.97438 * 12 11 10 34 34 H 0.97006 * 119.99849 * 179.97438 * 12 11 10 35 35 H 0.96997 * 119.99749 * 179.97438 * 17 16 14 36 36 H 1.07995 * 120.11878 * 0.02562 * 22 8 7 37 37 H 1.08011 * 120.03734 * 359.74369 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1984 0.0000 4 6 3.5805 1.2030 0.0005 5 6 4.2768 0.0101 0.0016 6 6 3.5862 -1.1953 0.0012 7 7 4.2870 -2.4035 0.0029 8 6 5.5259 -2.4925 0.6460 9 6 5.8250 -1.6277 1.7005 10 6 7.0429 -1.7031 2.3458 11 6 7.9849 -2.6426 1.9520 12 7 9.2093 -2.7177 2.6023 13 6 7.6916 -3.5242 0.8838 14 6 8.6398 -4.4842 0.4737 15 1 9.3695 -4.8574 1.1770 16 6 8.6352 -4.9531 -0.8442 17 7 7.9562 -4.3149 -1.7637 18 14 9.5980 -6.4900 -1.2921 19 1 9.0914 -7.6397 -0.5005 20 1 9.4315 -6.7738 -2.7402 21 1 11.0367 -6.2778 -0.9918 22 6 6.4447 -3.4387 0.2387 23 6 2.1966 -1.1961 0.0005 24 1 -0.3633 0.0005 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3633 -0.8901 -0.5135 27 1 1.6559 2.1326 -0.0008 28 1 4.1168 2.1405 0.0001 29 1 5.3567 0.0145 0.0024 30 1 3.9145 -3.1809 -0.4419 31 1 5.0974 -0.8936 2.0139 32 1 7.2630 -1.0291 3.1605 33 1 9.4080 -2.1123 3.3336 34 1 9.8660 -3.3756 2.3252 35 1 7.9533 -4.6399 -2.6776 36 1 6.2083 -4.1086 -0.5747 37 1 1.6566 -2.1315 0.0051 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127210545.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:10 Heat of formation + Delta-G solvation = 26.552109 kcal Electronic energy + Delta-G solvation = -19302.654036 eV Core-core repulsion = 16428.984751 eV Total energy + Delta-G solvation = -2873.669285 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.76415 -39.42744 -36.93460 -35.39157 -33.85361 -33.15104 -31.39579 -30.57871 -27.90523 -27.67221 -26.65672 -23.58542 -22.71978 -22.50238 -21.14666 -19.01210 -18.27827 -17.44521 -17.35536 -16.93885 -16.58777 -16.37262 -15.71759 -14.86557 -14.68408 -14.39584 -14.29965 -14.11335 -13.97126 -13.68718 -13.37317 -13.08206 -12.92715 -12.81649 -12.75523 -12.29768 -12.14334 -12.00305 -11.83260 -11.73876 -11.28407 -10.97725 -10.37247 -9.56363 -9.24923 -8.83493 -8.51148 -7.47816 -6.06481 0.55639 0.57567 1.06973 1.40517 1.43490 1.50564 1.58430 2.25229 2.68995 2.85340 3.02162 3.68011 3.86080 4.05019 4.11313 4.36969 4.48045 4.58766 4.63390 4.73047 4.76142 4.91596 5.00235 5.06059 5.16062 5.26097 5.31286 5.38438 5.49137 5.64663 5.68482 5.79280 5.82065 5.95898 6.05408 6.14015 6.28639 6.49097 6.88899 6.94852 7.02480 7.07714 7.34741 7.58302 8.47591 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.025243 B = 0.004746 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.939881 B = 5898.365425 C = 6629.335322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.059 4.059 3 C -0.170 4.170 4 C -0.088 4.088 5 C -0.190 4.190 6 C 0.186 3.814 7 N -0.689 5.689 8 C 0.136 3.864 9 C -0.220 4.220 10 C -0.167 4.167 11 C 0.093 3.907 12 N -0.874 5.874 13 C 0.052 3.948 14 C -0.491 4.491 15 H 0.078 0.922 16 C 0.033 3.967 17 N -0.837 5.837 18 Si 0.976 3.024 19 H -0.264 1.264 20 H -0.276 1.276 21 H -0.260 1.260 22 C -0.197 4.197 23 C -0.191 4.191 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.145 0.855 28 H 0.137 0.863 29 H 0.100 0.900 30 H 0.402 0.598 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.393 0.607 34 H 0.392 0.608 35 H 0.280 0.720 36 H 0.102 0.898 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.040 6.137 2.333 11.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.059 4.059 3 C -0.189 4.189 4 C -0.106 4.106 5 C -0.212 4.212 6 C 0.087 3.913 7 N -0.311 5.311 8 C 0.039 3.961 9 C -0.242 4.242 10 C -0.192 4.192 11 C -0.010 4.010 12 N -0.417 5.417 13 C 0.047 3.953 14 C -0.522 4.522 15 H 0.096 0.904 16 C -0.180 4.180 17 N -0.465 5.465 18 Si 0.798 3.202 19 H -0.189 1.189 20 H -0.201 1.201 21 H -0.184 1.184 22 C -0.221 4.221 23 C -0.213 4.213 24 H 0.098 0.902 25 H 0.101 0.899 26 H 0.089 0.911 27 H 0.163 0.837 28 H 0.155 0.845 29 H 0.119 0.881 30 H 0.237 0.763 31 H 0.121 0.879 32 H 0.133 0.867 33 H 0.221 0.779 34 H 0.221 0.779 35 H 0.090 0.910 36 H 0.120 0.880 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.061 6.187 2.108 11.172 hybrid contribution 0.971 -1.130 -0.469 1.562 sum -8.089 5.057 1.638 9.680 Atomic orbital electron populations 1.20818 0.88884 1.03655 1.03121 1.20037 0.97397 0.92022 0.96480 1.21140 0.93622 0.98308 1.05840 1.21153 0.94920 0.97058 0.97488 1.21033 0.99594 0.92513 1.08070 1.18045 0.91488 0.86024 0.95759 1.42054 1.19365 1.10570 1.59156 1.17517 0.85857 0.98816 0.93892 1.20090 0.98744 1.05335 1.00075 1.20079 0.94442 1.01479 1.03161 1.18093 0.88247 0.97037 0.97576 1.41741 1.15895 1.43543 1.40553 1.17350 0.92664 0.93164 0.92142 1.19374 1.15021 1.21707 0.96131 0.90422 1.26585 0.95924 0.99634 0.95816 1.69945 1.36642 1.37099 1.02775 0.85339 0.79186 0.78195 0.77444 1.18854 1.20120 1.18396 1.20642 0.93077 1.03631 1.04733 1.20860 0.91420 0.99293 1.09713 0.90246 0.89937 0.91136 0.83703 0.84500 0.88134 0.76330 0.87930 0.86673 0.77919 0.77905 0.91003 0.88034 0.85466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.87 10.01 71.24 0.71 -1.16 16 2 C -0.06 -1.50 5.88 -19.88 -0.12 -1.61 16 3 C -0.17 -4.25 9.70 22.30 0.22 -4.03 16 4 C -0.09 -2.56 10.04 22.25 0.22 -2.34 16 5 C -0.19 -7.00 7.75 22.40 0.17 -6.83 16 6 C 0.19 6.91 5.90 38.23 0.23 7.13 16 7 N -0.69 -28.43 5.46 -180.54 -0.99 -29.42 16 8 C 0.14 6.49 6.03 38.14 0.23 6.72 16 9 C -0.22 -10.05 7.88 22.56 0.18 -9.87 16 10 C -0.17 -7.48 9.86 22.34 0.22 -7.26 16 11 C 0.09 4.44 6.79 38.98 0.26 4.70 16 12 N -0.87 -34.22 8.98 -50.31 -0.45 -34.67 16 13 C 0.05 2.79 5.57 -21.18 -0.12 2.67 16 14 C -0.49 -25.87 8.47 23.35 0.20 -25.67 16 15 H 0.08 3.83 6.71 -2.91 -0.02 3.81 16 16 C 0.03 1.67 5.19 85.23 0.44 2.11 16 17 N -0.84 -44.88 10.92 21.82 0.24 -44.64 16 18 Si 0.98 38.78 29.58 68.60 2.03 40.81 16 19 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 20 H -0.28 -10.67 7.11 99.48 0.71 -9.96 16 21 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 22 C -0.20 -10.51 8.54 22.81 0.19 -10.32 16 23 C -0.19 -5.84 9.61 22.40 0.22 -5.63 16 24 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.08 1.13 8.09 -2.39 -0.02 1.11 16 26 H 0.07 1.13 8.08 -2.39 -0.02 1.11 16 27 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 28 H 0.14 3.31 8.06 -2.91 -0.02 3.28 16 29 H 0.10 4.22 6.61 -2.91 -0.02 4.20 16 30 H 0.40 15.37 8.89 -92.71 -0.82 14.55 16 31 H 0.10 4.44 6.33 -2.91 -0.02 4.42 16 32 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 33 H 0.39 12.58 8.83 -92.71 -0.82 11.76 16 34 H 0.39 15.14 7.06 -92.70 -0.65 14.48 16 35 H 0.28 13.87 8.30 -92.71 -0.77 13.10 16 36 H 0.10 5.71 6.21 -2.91 -0.02 5.69 16 37 H 0.13 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -61.67 308.96 2.92 -58.76 By element: Atomic # 1 Polarization: 61.70 SS G_CDS: -1.17 Total: 60.53 kcal Atomic # 6 Polarization: -54.63 SS G_CDS: 3.26 Total: -51.37 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -1.20 Total: -108.73 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 2.03 Total: 40.81 kcal Total: -61.67 2.92 -58.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127210545.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.309 kcal (2) G-P(sol) polarization free energy of solvation -61.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds