Wall clock time and date at job start Mon Mar 30 2020 07:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.46566 * 2 1 4 4 O 1.42900 * 109.47002 * 240.00052 * 2 1 3 5 5 C 1.50697 * 109.47232 * 119.99826 * 2 1 3 6 6 C 1.38265 * 119.93696 * 265.00373 * 5 2 1 7 7 C 1.38184 * 120.09069 * 179.97438 * 6 5 2 8 8 C 1.38654 * 119.97147 * 0.02562 * 7 6 5 9 9 O 1.35961 * 120.06134 * 179.97438 * 8 7 6 10 10 C 1.42895 * 116.99861 * 0.02562 * 9 8 7 11 11 C 1.53006 * 109.47036 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47127 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47055 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00290 * 0.02562 * 13 12 11 15 15 C 1.37887 * 120.00079 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99685 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00129 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47011 * 90.00204 * 17 15 13 19 19 H 1.48498 * 109.47112 * 210.00472 * 17 15 13 20 20 H 1.48499 * 109.47134 * 330.00583 * 17 15 13 21 21 C 1.38907 * 119.87679 * 0.24928 * 8 7 6 22 22 F 1.35099 * 120.04685 * 179.74339 * 21 8 7 23 23 C 1.38259 * 119.93263 * 84.97759 * 5 2 1 24 24 H 1.09001 * 109.46882 * 299.99675 * 1 2 3 25 25 H 1.08998 * 109.46825 * 60.00275 * 1 2 3 26 26 H 1.09005 * 109.46922 * 179.97438 * 1 2 3 27 27 H 0.96704 * 113.99583 * 60.00394 * 4 2 1 28 28 H 1.07993 * 119.95147 * 359.97438 * 6 5 2 29 29 H 1.08000 * 120.00844 * 180.02562 * 7 6 5 30 30 H 1.09001 * 109.47626 * 60.00108 * 10 9 8 31 31 H 1.09001 * 109.47255 * 299.99849 * 10 9 8 32 32 H 1.09001 * 109.47002 * 299.99477 * 11 10 9 33 33 H 1.08993 * 109.46955 * 59.99914 * 11 10 9 34 34 H 1.09001 * 109.47289 * 299.99953 * 12 11 10 35 35 H 1.09004 * 109.47261 * 59.99697 * 12 11 10 36 36 H 0.96999 * 119.99910 * 179.97438 * 16 15 13 37 37 H 1.07990 * 119.98742 * 0.02763 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0324 -0.7104 1.2305 6 6 2.3608 0.0155 2.3605 7 6 2.8212 -0.6327 3.4907 8 6 2.9548 -2.0128 3.4917 9 8 3.4081 -2.6523 4.6026 10 6 3.7279 -1.8399 5.7338 11 6 4.2168 -2.7294 6.8787 12 6 4.5599 -1.8595 8.0896 13 6 5.0408 -2.7357 9.2174 14 1 5.0966 -3.8060 9.0838 15 6 5.4106 -2.1710 10.4197 16 7 5.3431 -0.8676 10.5823 17 14 6.0074 -3.2570 11.8175 18 1 7.4806 -3.4188 11.7243 19 1 5.6597 -2.6273 13.1167 20 1 5.3563 -4.5883 11.7227 21 6 2.6299 -2.7402 2.3538 22 9 2.7636 -4.0846 2.3493 23 6 2.1635 -2.0867 1.2273 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7210 -0.2700 -1.9979 28 1 2.2573 1.0905 2.3598 29 1 3.0770 -0.0644 4.3728 30 1 2.8397 -1.2942 6.0521 31 1 4.5115 -1.1322 5.4630 32 1 3.4329 -3.4367 7.1494 33 1 5.1049 -3.2754 6.5607 34 1 5.3440 -1.1525 7.8186 35 1 3.6720 -1.3131 8.4077 36 1 5.6029 -0.4703 11.4282 37 1 1.9064 -2.6513 0.3434 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131958525.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:35 Heat of formation + Delta-G solvation = -130.529968 kcal Electronic energy + Delta-G solvation = -19462.282818 eV Core-core repulsion = 16118.739967 eV Total energy + Delta-G solvation = -3343.542851 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.67312 -40.10571 -38.48668 -36.63690 -34.07846 -32.12507 -31.50304 -30.74781 -28.87591 -26.99105 -24.26483 -23.50925 -22.47346 -21.05391 -20.25283 -18.17963 -17.71012 -16.94793 -16.36663 -16.15287 -16.09692 -15.31057 -15.15429 -14.77133 -14.59343 -14.43111 -13.90211 -13.31609 -13.19525 -12.88520 -12.72287 -12.38445 -12.19609 -11.96616 -11.77546 -11.40187 -11.17424 -11.04896 -10.73773 -10.60696 -10.53284 -10.38254 -9.79400 -9.56042 -9.18867 -8.98610 -8.40637 -8.09507 -6.05987 -4.08476 1.06769 1.14714 3.28445 3.30401 3.36586 3.41191 3.42250 3.88346 4.19044 4.43060 4.49181 4.66551 4.75368 4.85547 4.99412 5.15530 5.30364 5.33199 5.41724 5.47132 5.50022 5.54257 5.77403 5.84835 5.88918 5.97576 6.10935 6.32173 6.49142 6.51597 6.74361 6.95116 7.29204 7.48893 7.57440 7.67930 7.92555 8.34330 8.97658 9.56026 11.05552 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.043058 B = 0.002995 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.129170 B = 9347.301957 C = 9830.516263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.150 3.850 3 H 0.066 0.934 4 O -0.563 6.563 5 C -0.109 4.109 6 C -0.079 4.079 7 C -0.185 4.185 8 C 0.113 3.887 9 O -0.307 6.307 10 C 0.057 3.943 11 C -0.109 4.109 12 C 0.025 3.975 13 C -0.521 4.521 14 H 0.058 0.942 15 C 0.057 3.943 16 N -0.896 5.896 17 Si 0.895 3.105 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.058 3.942 22 F -0.133 7.133 23 C -0.090 4.090 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.379 0.621 28 H 0.131 0.869 29 H 0.143 0.857 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.261 0.739 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.350 4.468 -22.127 24.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.091 3.909 3 H 0.084 0.916 4 O -0.369 6.369 5 C -0.110 4.110 6 C -0.097 4.097 7 C -0.204 4.204 8 C 0.066 3.934 9 O -0.220 6.220 10 C -0.017 4.017 11 C -0.146 4.146 12 C -0.012 4.012 13 C -0.559 4.559 14 H 0.076 0.924 15 C -0.144 4.144 16 N -0.535 5.535 17 Si 0.723 3.277 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 C 0.038 3.962 22 F -0.112 7.112 23 C -0.109 4.109 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.227 0.773 28 H 0.149 0.851 29 H 0.161 0.839 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.071 0.929 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.005 3.957 -21.482 23.627 hybrid contribution 0.099 -0.089 0.550 0.566 sum -8.906 3.868 -20.932 23.074 Atomic orbital electron populations 1.22518 0.95517 1.03292 1.02634 1.20430 0.92719 0.94232 0.83480 0.91611 1.86562 1.77008 1.57597 1.15764 1.19224 1.03908 0.92898 0.94923 1.20749 0.97221 0.99946 0.91766 1.21215 1.05871 0.92505 1.00782 1.19185 0.95465 0.91435 0.87363 1.86211 1.78375 1.37043 1.20409 1.23305 0.99641 0.94778 0.83995 1.21740 1.00675 0.98868 0.93363 1.19045 0.96939 0.94827 0.90367 1.21186 1.43799 0.93649 0.97312 0.92419 1.25024 0.95654 0.95037 0.98728 1.69958 1.48347 1.09822 1.25379 0.86541 0.79105 0.80640 0.81438 1.20585 1.21174 1.19786 1.17011 1.07862 0.77519 0.93788 1.91496 1.94026 1.28751 1.96890 1.20728 0.99074 0.94603 0.96474 0.91178 0.92063 0.91521 0.77350 0.85118 0.83886 0.92059 0.92048 0.92077 0.92078 0.96280 0.96278 0.92903 0.83957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.15 9.52 37.16 0.35 -0.80 16 2 C 0.15 1.18 3.79 -27.88 -0.11 1.07 16 3 H 0.07 0.42 8.05 -51.93 -0.42 0.00 16 4 O -0.56 -4.58 12.46 -35.23 -0.44 -5.02 16 5 C -0.11 -1.18 5.01 -104.61 -0.52 -1.71 16 6 C -0.08 -0.84 9.67 -39.59 -0.38 -1.22 16 7 C -0.18 -2.41 9.04 -39.45 -0.36 -2.76 16 8 C 0.11 1.78 6.69 -39.18 -0.26 1.52 16 9 O -0.31 -5.55 10.00 -19.62 -0.20 -5.75 16 10 C 0.06 1.00 4.74 37.16 0.18 1.18 16 11 C -0.11 -2.29 5.52 -26.73 -0.15 -2.43 16 12 C 0.03 0.64 4.97 -27.89 -0.14 0.50 16 13 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 17 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 C 0.06 0.88 7.31 -39.30 -0.29 0.59 16 22 F -0.13 -2.20 17.11 2.25 0.04 -2.16 16 23 C -0.09 -1.13 9.32 -39.54 -0.37 -1.50 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.38 1.30 9.08 45.56 0.41 1.71 16 28 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 29 H 0.14 1.72 6.30 -52.49 -0.33 1.39 16 30 H 0.06 1.00 7.66 -51.93 -0.40 0.61 16 31 H 0.06 1.01 7.66 -51.93 -0.40 0.62 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.14 1.64 7.62 -52.49 -0.40 1.24 16 LS Contribution 321.36 15.07 4.84 4.84 Total: -1.00 -32.12 321.36 -6.95 -39.07 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: -4.45 Total: -2.62 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -2.45 Total: -19.07 kcal Atomic # 7 Polarization: -26.62 SS G_CDS: 0.74 Total: -25.88 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: -0.64 Total: -10.77 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.12 -6.95 -39.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131958525.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.462 kcal (2) G-P(sol) polarization free energy of solvation -32.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds