Wall clock time and date at job start Mon Mar 30 2020 07:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.46566 * 2 1 4 4 O 1.42900 * 109.47002 * 240.00052 * 2 1 3 5 5 C 1.50697 * 109.47232 * 119.99826 * 2 1 3 6 6 C 1.38265 * 119.93696 * 265.00373 * 5 2 1 7 7 C 1.38184 * 120.09069 * 179.97438 * 6 5 2 8 8 C 1.38654 * 119.97147 * 0.02562 * 7 6 5 9 9 O 1.35961 * 120.06134 * 179.97438 * 8 7 6 10 10 C 1.42895 * 116.99861 * 0.02562 * 9 8 7 11 11 C 1.53006 * 109.47036 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47127 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47055 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00290 * 0.02562 * 13 12 11 15 15 C 1.37887 * 120.00079 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99685 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00129 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47011 * 90.00204 * 17 15 13 19 19 H 1.48498 * 109.47112 * 210.00472 * 17 15 13 20 20 H 1.48499 * 109.47134 * 330.00583 * 17 15 13 21 21 C 1.38907 * 119.87679 * 0.24928 * 8 7 6 22 22 F 1.35099 * 120.04685 * 179.74339 * 21 8 7 23 23 C 1.38259 * 119.93263 * 84.97759 * 5 2 1 24 24 H 1.09001 * 109.46882 * 299.99675 * 1 2 3 25 25 H 1.08998 * 109.46825 * 60.00275 * 1 2 3 26 26 H 1.09005 * 109.46922 * 179.97438 * 1 2 3 27 27 H 0.96704 * 113.99583 * 60.00394 * 4 2 1 28 28 H 1.07993 * 119.95147 * 359.97438 * 6 5 2 29 29 H 1.08000 * 120.00844 * 180.02562 * 7 6 5 30 30 H 1.09001 * 109.47626 * 60.00108 * 10 9 8 31 31 H 1.09001 * 109.47255 * 299.99849 * 10 9 8 32 32 H 1.09001 * 109.47002 * 299.99477 * 11 10 9 33 33 H 1.08993 * 109.46955 * 59.99914 * 11 10 9 34 34 H 1.09001 * 109.47289 * 299.99953 * 12 11 10 35 35 H 1.09004 * 109.47261 * 59.99697 * 12 11 10 36 36 H 0.96999 * 119.99910 * 179.97438 * 16 15 13 37 37 H 1.07990 * 119.98742 * 0.02763 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0324 -0.7104 1.2305 6 6 2.3608 0.0155 2.3605 7 6 2.8212 -0.6327 3.4907 8 6 2.9548 -2.0128 3.4917 9 8 3.4081 -2.6523 4.6026 10 6 3.7279 -1.8399 5.7338 11 6 4.2168 -2.7294 6.8787 12 6 4.5599 -1.8595 8.0896 13 6 5.0408 -2.7357 9.2174 14 1 5.0966 -3.8060 9.0838 15 6 5.4106 -2.1710 10.4197 16 7 5.3431 -0.8676 10.5823 17 14 6.0074 -3.2570 11.8175 18 1 7.4806 -3.4188 11.7243 19 1 5.6597 -2.6273 13.1167 20 1 5.3563 -4.5883 11.7227 21 6 2.6299 -2.7402 2.3538 22 9 2.7636 -4.0846 2.3493 23 6 2.1635 -2.0867 1.2273 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7210 -0.2700 -1.9979 28 1 2.2573 1.0905 2.3598 29 1 3.0770 -0.0644 4.3728 30 1 2.8397 -1.2942 6.0521 31 1 4.5115 -1.1322 5.4630 32 1 3.4329 -3.4367 7.1494 33 1 5.1049 -3.2754 6.5607 34 1 5.3440 -1.1525 7.8186 35 1 3.6720 -1.3131 8.4077 36 1 5.6029 -0.4703 11.4282 37 1 1.9064 -2.6513 0.3434 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131958525.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:34 Heat of formation + Delta-G solvation = -151.216738 kcal Electronic energy + Delta-G solvation = -19463.179863 eV Core-core repulsion = 16118.739967 eV Total energy + Delta-G solvation = -3344.439897 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.87031 -41.18507 -39.44846 -37.46821 -35.99187 -33.78698 -32.54350 -31.74766 -29.85289 -28.66093 -25.71586 -24.47065 -23.83050 -22.14480 -21.77823 -19.38647 -18.59577 -18.40693 -17.81783 -17.46427 -17.15011 -16.52561 -16.46589 -16.11172 -15.67173 -15.36812 -15.05080 -14.89881 -14.33415 -14.07709 -13.81363 -13.65414 -13.33905 -13.27229 -12.90228 -12.78195 -12.60854 -12.41860 -12.24298 -12.03801 -11.82918 -11.56010 -11.52402 -11.26754 -10.97214 -10.57930 -9.98415 -9.17659 -8.23633 -6.34146 0.07098 0.14545 1.40137 1.40960 1.52327 2.03633 2.40921 2.45791 3.10263 3.15935 3.29673 3.64610 3.79861 4.00556 4.04191 4.13460 4.16847 4.31425 4.36335 4.42218 4.45655 4.72922 4.78547 4.85713 4.89750 4.99293 5.02778 5.07265 5.16015 5.30313 5.44874 5.45369 5.63830 5.64571 5.78874 6.17250 6.29605 6.80590 6.96573 7.34944 8.88294 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.043058 B = 0.002995 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.129170 B = 9347.301957 C = 9830.516263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.151 3.849 3 H 0.091 0.909 4 O -0.584 6.584 5 C -0.103 4.103 6 C -0.068 4.068 7 C -0.186 4.186 8 C 0.081 3.919 9 O -0.331 6.331 10 C 0.069 3.931 11 C -0.099 4.099 12 C 0.031 3.969 13 C -0.548 4.548 14 H 0.057 0.943 15 C 0.003 3.997 16 N -0.929 5.929 17 Si 0.965 3.035 18 H -0.272 1.272 19 H -0.279 1.279 20 H -0.266 1.266 21 C 0.032 3.968 22 F -0.150 7.150 23 C -0.091 4.091 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.051 0.949 27 H 0.400 0.600 28 H 0.170 0.830 29 H 0.152 0.848 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.003 0.997 35 H 0.003 0.997 36 H 0.266 0.734 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.911 5.679 -23.281 25.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.092 3.908 3 H 0.109 0.891 4 O -0.393 6.393 5 C -0.103 4.103 6 C -0.086 4.086 7 C -0.205 4.205 8 C 0.034 3.966 9 O -0.246 6.246 10 C -0.005 4.005 11 C -0.136 4.136 12 C -0.006 4.006 13 C -0.585 4.585 14 H 0.076 0.924 15 C -0.195 4.195 16 N -0.569 5.569 17 Si 0.789 3.211 18 H -0.197 1.197 19 H -0.204 1.204 20 H -0.190 1.190 21 C 0.012 3.988 22 F -0.129 7.129 23 C -0.110 4.110 24 H 0.091 0.909 25 H 0.103 0.897 26 H 0.070 0.930 27 H 0.251 0.749 28 H 0.187 0.813 29 H 0.169 0.831 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.021 0.979 35 H 0.022 0.978 36 H 0.074 0.926 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.578 5.172 -22.673 25.151 hybrid contribution 0.221 -0.394 0.762 0.886 sum -9.357 4.778 -21.911 24.300 Atomic orbital electron populations 1.22491 0.94307 1.02803 1.04009 1.20521 0.93489 0.94628 0.82124 0.89129 1.86508 1.77416 1.58473 1.16919 1.19742 1.01865 0.92263 0.96459 1.21169 0.95174 1.01769 0.90494 1.21426 1.05625 0.91374 1.02058 1.19448 0.97585 0.92742 0.86791 1.86116 1.79500 1.37797 1.21151 1.23001 1.00388 0.93819 0.83323 1.21455 1.00430 0.98482 0.93254 1.18894 0.95505 0.94638 0.91585 1.21624 1.44192 0.94105 0.98619 0.92433 1.25928 0.95645 0.96463 1.01465 1.70067 1.49075 1.11508 1.26292 0.85450 0.78782 0.78856 0.77997 1.19727 1.20438 1.19047 1.17390 1.09533 0.77033 0.94805 1.91439 1.94373 1.30034 1.97042 1.20897 0.98729 0.95657 0.95735 0.90885 0.89667 0.92957 0.74932 0.81290 0.83078 0.90930 0.91037 0.92509 0.92563 0.97896 0.97843 0.92569 0.83330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.69 9.52 71.98 0.69 -1.00 16 2 C 0.15 1.84 3.79 29.85 0.11 1.96 16 3 H 0.09 0.72 8.05 -2.39 -0.02 0.70 16 4 O -0.58 -7.83 12.46 -148.98 -1.86 -9.69 16 5 C -0.10 -1.98 5.01 -19.85 -0.10 -2.08 16 6 C -0.07 -1.26 9.67 22.26 0.22 -1.05 16 7 C -0.19 -4.60 9.04 22.36 0.20 -4.40 16 8 C 0.08 2.56 6.69 22.53 0.15 2.71 16 9 O -0.33 -12.26 10.00 -93.11 -0.93 -13.19 16 10 C 0.07 2.45 4.74 71.98 0.34 2.79 16 11 C -0.10 -4.24 5.52 30.60 0.17 -4.07 16 12 C 0.03 1.61 4.97 29.85 0.15 1.76 16 13 C -0.55 -31.37 9.11 25.60 0.23 -31.13 16 14 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 15 C 0.00 0.18 5.46 84.66 0.46 0.65 16 16 N -0.93 -55.72 13.29 21.45 0.28 -55.43 16 17 Si 0.96 44.33 29.54 68.60 2.03 46.35 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 21 C 0.03 0.99 7.31 22.45 0.16 1.15 16 22 F -0.15 -5.19 17.11 44.97 0.77 -4.42 16 23 C -0.09 -2.24 9.32 22.30 0.21 -2.03 16 24 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 27 H 0.40 1.47 9.08 -74.05 -0.67 0.80 16 28 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 29 H 0.15 3.42 6.30 -2.91 -0.02 3.40 16 30 H 0.07 2.38 7.66 -2.39 -0.02 2.36 16 31 H 0.07 2.36 7.66 -2.39 -0.02 2.34 16 32 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 35 H 0.00 0.17 8.14 -2.38 -0.02 0.16 16 36 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 37 H 0.15 3.36 7.62 -2.92 -0.02 3.33 16 Total: -1.00 -70.19 321.36 3.69 -66.50 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: 0.40 Total: 4.63 kcal Atomic # 6 Polarization: -37.74 SS G_CDS: 2.99 Total: -34.74 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: 0.28 Total: -55.43 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -2.79 Total: -22.88 kcal Atomic # 9 Polarization: -5.19 SS G_CDS: 0.77 Total: -4.42 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -70.19 3.69 -66.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131958525.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.713 kcal (2) G-P(sol) polarization free energy of solvation -70.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds