Wall clock time and date at job start Mon Mar 30 2020 06:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86791 * 119.99763 * 2 1 4 4 H 1.48507 * 109.47287 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47320 * 300.00257 * 3 2 1 6 6 H 1.48505 * 109.47272 * 60.00871 * 3 2 1 7 7 C 1.37876 * 119.99951 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00132 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99862 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46593 * 184.86353 * 9 7 2 11 11 C 1.40014 * 111.00102 * 285.95683 * 10 9 7 12 12 C 1.38744 * 120.07473 * 296.32660 * 11 10 9 13 13 C 1.38413 * 120.01120 * 180.31783 * 12 11 10 14 14 F 1.35097 * 119.92037 * 179.69955 * 13 12 11 15 15 C 1.38467 * 120.15040 * 359.67933 * 13 12 11 16 16 C 1.38435 * 120.14573 * 0.02562 * 15 13 12 17 17 F 1.35095 * 120.00607 * 180.02562 * 16 15 13 18 18 C 1.38817 * 119.98309 * 359.97438 * 16 15 13 19 19 N 1.40362 * 120.07464 * 180.02562 * 18 16 15 20 20 C 1.46909 * 110.99857 * 162.01070 * 10 9 7 21 21 C 1.53000 * 117.49768 * 10.05887 * 20 10 9 22 22 C 1.53000 * 60.00078 * 252.51613 * 21 20 10 23 23 H 0.96990 * 119.99879 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47145 * 64.86644 * 9 7 2 25 25 H 1.09000 * 109.47214 * 304.85920 * 9 7 2 26 26 H 1.07998 * 119.99005 * 359.97438 * 12 11 10 27 27 H 1.08000 * 119.92169 * 180.02562 * 15 13 12 28 28 H 0.97000 * 119.99428 * 359.97438 * 19 18 16 29 29 H 0.96994 * 119.99949 * 179.72234 * 19 18 16 30 30 H 1.08992 * 115.55011 * 155.77412 * 20 10 9 31 31 H 1.09007 * 117.49825 * 0.02562 * 21 20 10 32 32 H 1.08994 * 117.49843 * 145.02073 * 21 20 10 33 33 H 1.08995 * 117.49476 * 252.51065 * 22 21 20 34 34 H 1.09004 * 117.49805 * 107.49543 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2014 -3.6132 0.1163 11 6 2.8906 -3.8130 -1.0860 12 6 2.2008 -4.1943 -2.2278 13 6 2.8843 -4.3979 -3.4141 14 9 2.2115 -4.7750 -4.5232 15 6 4.2559 -4.2154 -3.4666 16 6 4.9497 -3.8290 -2.3327 17 9 6.2878 -3.6513 -2.3872 18 6 4.2700 -3.6233 -1.1399 19 7 4.9715 -3.2310 0.0108 20 6 1.5210 -4.8431 0.5435 21 6 -0.0089 -4.8355 0.5577 22 6 0.7684 -4.8078 1.8752 23 1 -0.4849 0.8400 0.0004 24 1 0.6910 -2.5953 -0.9307 25 1 0.5610 -2.5203 0.8430 26 1 1.1310 -4.3377 -2.1895 27 1 4.7854 -4.3748 -4.3942 28 1 5.9324 -3.1038 -0.0268 29 1 4.4950 -3.0837 0.8427 30 1 2.0176 -5.7741 0.2706 31 1 -0.5106 -3.9181 0.2495 32 1 -0.5192 -5.7618 0.2937 33 1 0.7694 -5.7158 2.4781 34 1 0.7781 -3.8720 2.4342 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132675207.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:31 Heat of formation + Delta-G solvation = -25.156881 kcal Electronic energy + Delta-G solvation = -20746.695640 eV Core-core repulsion = 17316.554555 eV Total energy + Delta-G solvation = -3430.141085 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.55925 -48.43223 -39.60336 -37.25212 -33.91347 -33.50528 -32.35483 -29.10409 -27.80775 -26.57744 -23.25112 -22.42585 -21.96720 -21.58279 -19.46007 -17.72747 -17.35304 -16.79511 -16.38156 -15.60002 -15.56584 -15.25000 -14.94618 -14.85104 -14.69307 -14.22220 -14.07332 -13.57286 -12.97581 -12.42479 -12.16010 -11.94476 -11.71345 -11.41689 -11.21832 -11.03207 -10.90901 -10.75443 -10.46188 -10.16382 -9.96682 -9.82610 -9.25516 -8.53419 -8.34668 -7.56175 -6.99641 -6.11300 -4.12164 1.40698 1.66323 3.26269 3.34437 3.38412 3.84154 4.04424 4.23245 4.36521 4.40171 4.64884 4.97738 5.14387 5.25918 5.29185 5.35064 5.42935 5.56601 5.65635 6.02058 6.07120 6.16370 6.28222 6.34491 6.49922 6.60963 6.65457 7.02009 7.11308 7.15890 7.64259 7.73984 7.95998 8.13771 8.24844 8.34717 8.94229 9.52045 10.99368 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.013378 B = 0.008381 C = 0.006837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.505203 B = 3339.928082 C = 4094.188447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.507 4.507 8 H 0.066 0.934 9 C 0.192 3.808 10 N -0.469 5.469 11 C 0.105 3.895 12 C -0.135 4.135 13 C 0.065 3.935 14 F -0.145 7.145 15 C -0.153 4.153 16 C 0.033 3.967 17 F -0.142 7.142 18 C 0.211 3.789 19 N -0.855 5.855 20 C 0.026 3.974 21 C -0.221 4.221 22 C -0.170 4.170 23 H 0.262 0.738 24 H 0.001 0.999 25 H 0.046 0.954 26 H 0.136 0.864 27 H 0.139 0.861 28 H 0.393 0.607 29 H 0.416 0.584 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.903 -9.726 -1.249 11.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.546 4.546 8 H 0.084 0.916 9 C 0.069 3.931 10 N -0.188 5.188 11 C 0.006 3.994 12 C -0.157 4.157 13 C 0.043 3.957 14 F -0.124 7.124 15 C -0.173 4.173 16 C 0.008 3.992 17 F -0.121 7.121 18 C 0.102 3.898 19 N -0.394 5.394 20 C -0.082 4.082 21 C -0.260 4.260 22 C -0.208 4.208 23 H 0.071 0.929 24 H 0.019 0.981 25 H 0.063 0.937 26 H 0.153 0.847 27 H 0.156 0.844 28 H 0.221 0.779 29 H 0.248 0.752 30 H 0.126 0.874 31 H 0.128 0.872 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.100 -9.461 -0.897 11.293 hybrid contribution 0.007 0.961 -0.573 1.119 sum 6.108 -8.500 -1.470 10.569 Atomic orbital electron populations 1.69943 1.05981 1.26820 1.50798 1.24932 0.94843 0.99233 0.95325 0.86470 0.80105 0.83506 0.77537 1.19705 1.21069 1.21026 1.21157 0.93702 0.89619 1.50132 0.91606 1.20067 0.89901 0.86256 0.96865 1.59611 1.29688 1.04211 1.25335 1.17743 0.90204 1.01249 0.90193 1.21557 1.01030 1.01577 0.91562 1.16830 0.89263 1.06395 0.83252 1.91446 1.80277 1.89501 1.51180 1.20596 0.93173 1.05054 0.98497 1.16447 0.77363 1.11957 0.93465 1.91413 1.29733 1.93994 1.96965 1.17549 0.90685 0.94946 0.86584 1.42381 1.09488 1.76883 1.10618 1.22597 0.91004 0.93541 1.01074 1.23616 0.96196 1.03605 1.02616 1.23018 1.03910 1.02998 0.90838 0.92883 0.98078 0.93653 0.84657 0.84352 0.77909 0.75184 0.87448 0.87239 0.89678 0.89299 0.88119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.56 13.29 55.43 0.74 -24.83 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.51 -13.42 8.92 -34.44 -0.31 -13.73 16 8 H 0.07 1.73 7.79 -52.49 -0.41 1.32 16 9 C 0.19 4.56 3.30 -4.97 -0.02 4.54 16 10 N -0.47 -9.13 3.80 -164.73 -0.63 -9.75 16 11 C 0.11 1.98 4.24 -83.52 -0.35 1.63 16 12 C -0.14 -2.47 8.49 -39.33 -0.33 -2.81 16 13 C 0.06 1.11 7.29 -39.43 -0.29 0.82 16 14 F -0.15 -2.45 17.26 2.25 0.04 -2.41 16 15 C -0.15 -2.43 10.00 -39.42 -0.39 -2.82 16 16 C 0.03 0.54 7.30 -39.29 -0.29 0.26 16 17 F -0.14 -2.24 16.64 2.25 0.04 -2.20 16 18 C 0.21 3.73 6.79 -83.32 -0.57 3.16 16 19 N -0.85 -13.45 9.10 32.61 0.30 -13.15 16 20 C 0.03 0.44 5.54 -67.71 -0.38 0.06 16 21 C -0.22 -3.58 9.55 -26.73 -0.26 -3.83 16 22 C -0.17 -2.63 9.92 -26.73 -0.27 -2.90 16 23 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 24 H 0.00 0.04 6.78 -51.93 -0.35 -0.31 16 25 H 0.05 1.14 5.66 -51.93 -0.29 0.85 16 26 H 0.14 2.46 7.61 -52.49 -0.40 2.06 16 27 H 0.14 1.85 8.06 -52.49 -0.42 1.43 16 28 H 0.39 5.27 8.32 -40.82 -0.34 4.93 16 29 H 0.42 6.79 8.11 -40.82 -0.33 6.46 16 30 H 0.11 1.62 8.04 -51.93 -0.42 1.21 16 31 H 0.11 2.08 6.01 -51.93 -0.31 1.76 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.10 1.75 7.49 -51.93 -0.39 1.36 16 LS Contribution 296.22 15.07 4.46 4.46 Total: -1.00 -27.83 296.22 -7.26 -35.09 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -3.65 Total: 10.62 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -3.54 Total: -14.12 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: 0.41 Total: -47.73 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.08 Total: -4.61 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.83 -7.26 -35.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132675207.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.929 kcal (2) G-P(sol) polarization free energy of solvation -27.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds