Wall clock time and date at job start Mon Mar 30 2020 06:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86791 * 119.99763 * 2 1 4 4 H 1.48507 * 109.47287 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47320 * 300.00257 * 3 2 1 6 6 H 1.48505 * 109.47272 * 60.00871 * 3 2 1 7 7 C 1.37876 * 119.99951 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00132 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99862 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46593 * 184.86353 * 9 7 2 11 11 C 1.40014 * 111.00102 * 285.95683 * 10 9 7 12 12 C 1.38744 * 120.07473 * 296.32660 * 11 10 9 13 13 C 1.38413 * 120.01120 * 180.31783 * 12 11 10 14 14 F 1.35097 * 119.92037 * 179.69955 * 13 12 11 15 15 C 1.38467 * 120.15040 * 359.67933 * 13 12 11 16 16 C 1.38435 * 120.14573 * 0.02562 * 15 13 12 17 17 F 1.35095 * 120.00607 * 180.02562 * 16 15 13 18 18 C 1.38817 * 119.98309 * 359.97438 * 16 15 13 19 19 N 1.40362 * 120.07464 * 180.02562 * 18 16 15 20 20 C 1.46909 * 110.99857 * 162.01070 * 10 9 7 21 21 C 1.53000 * 117.49768 * 10.05887 * 20 10 9 22 22 C 1.53000 * 60.00078 * 252.51613 * 21 20 10 23 23 H 0.96990 * 119.99879 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47145 * 64.86644 * 9 7 2 25 25 H 1.09000 * 109.47214 * 304.85920 * 9 7 2 26 26 H 1.07998 * 119.99005 * 359.97438 * 12 11 10 27 27 H 1.08000 * 119.92169 * 180.02562 * 15 13 12 28 28 H 0.97000 * 119.99428 * 359.97438 * 19 18 16 29 29 H 0.96994 * 119.99949 * 179.72234 * 19 18 16 30 30 H 1.08992 * 115.55011 * 155.77412 * 20 10 9 31 31 H 1.09007 * 117.49825 * 0.02562 * 21 20 10 32 32 H 1.08994 * 117.49843 * 145.02073 * 21 20 10 33 33 H 1.08995 * 117.49476 * 252.51065 * 22 21 20 34 34 H 1.09004 * 117.49805 * 107.49543 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2014 -3.6132 0.1163 11 6 2.8906 -3.8130 -1.0860 12 6 2.2008 -4.1943 -2.2278 13 6 2.8843 -4.3979 -3.4141 14 9 2.2115 -4.7750 -4.5232 15 6 4.2559 -4.2154 -3.4666 16 6 4.9497 -3.8290 -2.3327 17 9 6.2878 -3.6513 -2.3872 18 6 4.2700 -3.6233 -1.1399 19 7 4.9715 -3.2310 0.0108 20 6 1.5210 -4.8431 0.5435 21 6 -0.0089 -4.8355 0.5577 22 6 0.7684 -4.8078 1.8752 23 1 -0.4849 0.8400 0.0004 24 1 0.6910 -2.5953 -0.9307 25 1 0.5610 -2.5203 0.8430 26 1 1.1310 -4.3377 -2.1895 27 1 4.7854 -4.3748 -4.3942 28 1 5.9324 -3.1038 -0.0268 29 1 4.4950 -3.0837 0.8427 30 1 2.0176 -5.7741 0.2706 31 1 -0.5106 -3.9181 0.2495 32 1 -0.5192 -5.7618 0.2937 33 1 0.7694 -5.7158 2.4781 34 1 0.7781 -3.8720 2.4342 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132675207.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:30 Heat of formation + Delta-G solvation = -41.317664 kcal Electronic energy + Delta-G solvation = -20747.396424 eV Core-core repulsion = 17316.554555 eV Total energy + Delta-G solvation = -3430.841869 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.108 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.84147 -49.77133 -41.03114 -38.62061 -35.35918 -35.09246 -34.11444 -30.62757 -29.33109 -28.22874 -25.03708 -23.86390 -23.30379 -22.90712 -20.91714 -19.24063 -18.71119 -18.40307 -17.85825 -17.05391 -16.96855 -16.69782 -16.62781 -16.16863 -16.00664 -15.88368 -15.36415 -14.98482 -14.53162 -14.12339 -13.63759 -13.52200 -13.16781 -13.08133 -12.73851 -12.63260 -12.56793 -12.32321 -12.03510 -11.92815 -11.32922 -11.19050 -11.15647 -10.60118 -9.74104 -9.11817 -8.32797 -8.19498 -6.26463 0.04308 0.30068 1.37835 1.40189 1.51115 2.37617 2.45953 2.68628 2.93282 3.07378 3.15595 3.28504 3.62399 3.85301 3.94841 4.01290 4.13023 4.25320 4.28369 4.70396 4.82357 4.86542 4.95123 4.98842 5.09600 5.15775 5.20804 5.34578 5.36352 5.66684 5.76287 6.02810 6.30414 6.45537 6.68194 6.89560 7.01848 7.41708 8.91186 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.013378 B = 0.008381 C = 0.006837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.505203 B = 3339.928082 C = 4094.188447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.957 3.043 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.279 1.279 7 C -0.514 4.514 8 H 0.066 0.934 9 C 0.213 3.787 10 N -0.466 5.466 11 C 0.080 3.920 12 C -0.142 4.142 13 C 0.058 3.942 14 F -0.144 7.144 15 C -0.138 4.138 16 C 0.033 3.967 17 F -0.134 7.134 18 C 0.206 3.794 19 N -0.848 5.848 20 C 0.017 3.983 21 C -0.221 4.221 22 C -0.157 4.157 23 H 0.262 0.738 24 H -0.028 1.028 25 H 0.025 0.975 26 H 0.126 0.874 27 H 0.168 0.832 28 H 0.405 0.595 29 H 0.414 0.586 30 H 0.130 0.870 31 H 0.073 0.927 32 H 0.113 0.887 33 H 0.125 0.875 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.597 -10.432 -1.444 12.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.192 4.192 3 Si 0.783 3.217 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.205 1.205 7 C -0.553 4.553 8 H 0.085 0.915 9 C 0.089 3.911 10 N -0.185 5.185 11 C -0.019 4.019 12 C -0.164 4.164 13 C 0.036 3.964 14 F -0.123 7.123 15 C -0.158 4.158 16 C 0.008 3.992 17 F -0.113 7.113 18 C 0.096 3.904 19 N -0.387 5.387 20 C -0.091 4.091 21 C -0.260 4.260 22 C -0.195 4.195 23 H 0.071 0.929 24 H -0.010 1.010 25 H 0.043 0.957 26 H 0.144 0.856 27 H 0.186 0.814 28 H 0.235 0.765 29 H 0.245 0.755 30 H 0.148 0.852 31 H 0.092 0.908 32 H 0.131 0.869 33 H 0.143 0.857 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.829 -10.181 -1.084 12.889 hybrid contribution -0.497 1.120 -0.538 1.339 sum 7.331 -9.061 -1.622 11.768 Atomic orbital electron populations 1.70062 1.07396 1.27532 1.52148 1.25728 0.95583 1.02561 0.95285 0.85517 0.79143 0.79628 0.77444 1.18925 1.21145 1.20482 1.21506 0.93886 0.90835 1.49070 0.91537 1.19601 0.89790 0.87330 0.94365 1.59451 1.28716 1.04394 1.25975 1.17810 0.90830 1.03149 0.90106 1.21548 1.00756 1.01875 0.92222 1.16844 0.89818 1.06891 0.82887 1.91447 1.80388 1.89529 1.50963 1.20847 0.92569 1.03019 0.99373 1.16454 0.77706 1.11775 0.93275 1.91436 1.29067 1.93911 1.96912 1.17668 0.90478 0.94773 0.87501 1.42369 1.10089 1.76246 1.09997 1.22792 0.91215 0.93123 1.01971 1.23523 0.95863 1.03220 1.03405 1.23057 1.02520 1.03460 0.90437 0.92907 1.01029 0.95726 0.85585 0.81423 0.76529 0.75507 0.85244 0.90802 0.86900 0.85718 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.36 13.29 21.45 0.28 -54.08 16 2 C 0.01 0.36 5.46 84.65 0.46 0.83 16 3 Si 0.96 43.81 29.54 68.60 2.03 45.83 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 7 C -0.51 -27.56 8.92 25.60 0.23 -27.33 16 8 H 0.07 3.48 7.79 -2.91 -0.02 3.46 16 9 C 0.21 10.46 3.30 85.56 0.28 10.75 16 10 N -0.47 -18.24 3.80 -675.07 -2.57 -20.81 16 11 C 0.08 2.99 4.24 38.22 0.16 3.15 16 12 C -0.14 -5.18 8.49 22.43 0.19 -4.99 16 13 C 0.06 1.90 7.29 22.37 0.16 2.06 16 14 F -0.14 -4.68 17.26 44.97 0.78 -3.91 16 15 C -0.14 -4.04 10.00 22.37 0.22 -3.82 16 16 C 0.03 1.02 7.30 22.46 0.16 1.18 16 17 F -0.13 -3.85 16.64 44.97 0.75 -3.10 16 18 C 0.21 6.97 6.79 38.18 0.26 7.23 16 19 N -0.85 -25.40 9.10 -50.73 -0.46 -25.86 16 20 C 0.02 0.55 5.54 44.91 0.25 0.80 16 21 C -0.22 -7.15 9.55 30.59 0.29 -6.85 16 22 C -0.16 -4.72 9.92 30.59 0.30 -4.42 16 23 H 0.26 14.55 8.31 -92.72 -0.77 13.78 16 24 H -0.03 -1.52 6.78 -2.39 -0.02 -1.53 16 25 H 0.02 1.31 5.66 -2.39 -0.01 1.29 16 26 H 0.13 4.72 7.61 -2.91 -0.02 4.70 16 27 H 0.17 3.87 8.06 -2.91 -0.02 3.84 16 28 H 0.41 10.04 8.32 -92.71 -0.77 9.27 16 29 H 0.41 13.05 8.11 -92.71 -0.75 12.29 16 30 H 0.13 3.67 8.04 -2.39 -0.02 3.65 16 31 H 0.07 2.95 6.01 -2.38 -0.01 2.93 16 32 H 0.11 2.97 8.14 -2.39 -0.02 2.96 16 33 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 34 H 0.08 2.70 7.49 -2.38 -0.02 2.69 16 Total: -1.00 -59.65 296.22 3.42 -56.23 By element: Atomic # 1 Polarization: 27.46 SS G_CDS: -0.36 Total: 27.10 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: 2.98 Total: -21.40 kcal Atomic # 7 Polarization: -98.00 SS G_CDS: -2.74 Total: -100.75 kcal Atomic # 9 Polarization: -8.53 SS G_CDS: 1.52 Total: -7.01 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -59.65 3.42 -56.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132675207.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.911 kcal (2) G-P(sol) polarization free energy of solvation -59.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds