Wall clock time and date at job start Mon Mar 30 2020 07:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38678 * 120.78862 * 2 1 4 4 C 1.38179 * 119.15951 * 180.02562 * 3 2 1 5 5 N 1.31882 * 120.77183 * 0.02960 * 4 3 2 6 6 C 1.31862 * 121.72182 * 359.67345 * 5 4 3 7 7 C 1.38226 * 120.76223 * 0.59013 * 6 5 4 8 8 C 1.50693 * 120.41802 * 179.72730 * 7 6 5 9 9 N 1.46504 * 109.47146 * 259.71845 * 8 7 6 10 10 C 1.38856 * 119.99708 * 180.02562 * 9 8 7 11 11 C 1.39565 * 119.84901 * 359.72326 * 10 9 8 12 12 C 1.36334 * 120.16557 * 179.71944 * 11 10 9 13 13 C 1.40893 * 119.83490 * 0.55910 * 12 11 10 14 14 C 1.41136 * 120.15527 * 179.69901 * 13 12 11 15 15 H 1.07999 * 120.00088 * 155.10922 * 14 13 12 16 16 C 1.39862 * 119.99764 * 335.10827 * 14 13 12 17 17 N 1.30905 * 120.00205 * 342.12491 * 16 14 13 18 18 Si 1.86800 * 119.99783 * 162.13531 * 16 14 13 19 19 H 1.48494 * 109.47423 * 94.64924 * 18 16 14 20 20 H 1.48500 * 109.47101 * 214.65308 * 18 16 14 21 21 H 1.48504 * 109.47240 * 334.64514 * 18 16 14 22 22 C 1.40885 * 119.68806 * 359.71767 * 13 12 11 23 23 C 1.36339 * 119.83793 * 0.02562 * 22 13 12 24 24 H 1.08993 * 109.46949 * 269.97689 * 1 2 3 25 25 H 1.08995 * 109.47228 * 29.97708 * 1 2 3 26 26 H 1.08995 * 109.46648 * 149.97784 * 1 2 3 27 27 H 1.07999 * 120.41645 * 0.02562 * 3 2 1 28 28 H 1.07999 * 119.61394 * 179.97438 * 4 3 2 29 29 H 1.07996 * 119.61982 * 180.28926 * 6 5 4 30 30 H 1.08996 * 109.47576 * 19.72019 * 8 7 6 31 31 H 1.09004 * 109.47475 * 139.72162 * 8 7 6 32 32 H 0.96998 * 119.99820 * 359.97438 * 9 8 7 33 33 H 1.08005 * 119.91410 * 359.97438 * 11 10 9 34 34 H 1.07999 * 120.08502 * 180.27888 * 12 11 10 35 35 H 0.97006 * 119.99697 * 180.02562 * 17 16 14 36 36 H 1.07993 * 120.08153 * 179.97438 * 22 13 12 37 37 H 1.07993 * 119.92431 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5981 1.1520 -0.0005 5 7 4.2404 0.0002 -0.0016 6 6 3.5984 -1.1516 0.0041 7 6 2.2167 -1.1909 -0.0006 8 6 1.4910 -2.5116 -0.0002 9 7 1.0445 -2.8239 -1.3601 10 6 0.3478 -3.9989 -1.6093 11 6 0.0796 -4.8827 -0.5630 12 6 -0.6090 -6.0354 -0.7994 13 6 -1.0398 -6.3392 -2.1060 14 6 -1.7476 -7.5336 -2.3595 15 1 -2.4109 -7.5983 -3.2093 16 6 -1.5898 -8.6336 -1.5102 17 7 -0.5577 -8.6981 -0.7075 18 14 -2.8517 -10.0108 -1.5214 19 1 -2.3981 -11.0905 -2.4345 20 1 -3.0028 -10.5550 -0.1480 21 1 -4.1576 -9.4819 -1.9906 22 6 -0.7605 -5.4451 -3.1584 23 6 -0.0755 -4.2935 -2.9064 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3633 0.8901 -0.5134 26 1 -0.3632 -0.8898 -0.5142 27 1 1.6967 2.1378 0.0004 28 1 4.1583 2.0754 -0.0010 29 1 4.1586 -2.0749 0.0078 30 1 2.1625 -3.2951 0.3507 31 1 0.6265 -2.4510 0.6611 32 1 1.2350 -2.2096 -2.0862 33 1 0.4148 -4.6509 0.4372 34 1 -0.8197 -6.7163 0.0120 35 1 -0.4481 -9.4612 -0.1187 36 1 -1.0874 -5.6717 -4.1624 37 1 0.1397 -3.6074 -3.7120 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135444747.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:33 Heat of formation + Delta-G solvation = 50.895190 kcal Electronic energy + Delta-G solvation = -18918.502717 eV Core-core repulsion = 16045.889027 eV Total energy + Delta-G solvation = -2872.613690 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.44629 -37.95505 -35.57987 -33.93982 -32.99776 -31.44297 -29.47770 -28.75875 -27.94965 -25.98174 -23.95270 -22.81004 -21.78169 -20.83245 -19.89477 -17.21630 -16.77133 -16.63079 -16.27135 -15.28139 -15.02033 -14.61740 -14.14080 -13.80480 -13.55304 -13.26634 -12.94926 -12.75186 -12.63521 -12.60724 -12.37727 -11.96814 -11.72949 -11.27698 -11.25304 -11.01970 -10.84703 -10.48340 -9.73618 -9.55772 -9.52885 -9.34647 -9.23409 -9.09460 -8.55763 -7.51122 -6.65417 -6.41516 -4.04755 0.96971 1.13959 2.90393 3.08673 3.14516 3.19332 3.33839 3.63097 4.04846 4.31989 4.48130 4.59581 4.65853 4.75217 4.83811 4.93561 5.32024 5.39993 5.51036 5.56169 5.70657 5.81905 5.87461 6.01069 6.03737 6.25550 6.30229 6.33293 6.61501 6.89054 6.92451 7.18772 7.34429 7.52711 7.67339 7.81844 7.87125 8.14029 8.26717 8.46464 8.66540 8.77767 9.05024 9.13659 10.36290 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.043017 B = 0.003469 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.756119 B = 8068.756631 C = 8209.194987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.024 4.024 3 C -0.180 4.180 4 C 0.097 3.903 5 N -0.493 5.493 6 C 0.117 3.883 7 C -0.148 4.148 8 C 0.183 3.817 9 N -0.756 5.756 10 C 0.090 3.910 11 C -0.163 4.163 12 C -0.125 4.125 13 C 0.076 3.924 14 C -0.467 4.467 15 H 0.072 0.928 16 C 0.075 3.925 17 N -0.807 5.807 18 Si 0.902 3.098 19 H -0.273 1.273 20 H -0.278 1.278 21 H -0.263 1.263 22 C -0.187 4.187 23 C -0.156 4.156 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.132 0.868 28 H 0.153 0.847 29 H 0.157 0.843 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.384 0.616 33 H 0.088 0.912 34 H 0.118 0.882 35 H 0.276 0.724 36 H 0.091 0.909 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.392 14.710 3.437 15.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.033 4.033 3 C -0.200 4.200 4 C -0.059 4.059 5 N -0.201 5.201 6 C -0.040 4.040 7 C -0.150 4.150 8 C 0.057 3.943 9 N -0.392 5.392 10 C -0.007 4.007 11 C -0.184 4.184 12 C -0.145 4.145 13 C 0.073 3.927 14 C -0.498 4.498 15 H 0.090 0.910 16 C -0.140 4.140 17 N -0.434 5.434 18 Si 0.727 3.273 19 H -0.199 1.199 20 H -0.203 1.203 21 H -0.187 1.187 22 C -0.207 4.207 23 C -0.178 4.178 24 H 0.095 0.905 25 H 0.088 0.912 26 H 0.105 0.895 27 H 0.150 0.850 28 H 0.170 0.830 29 H 0.174 0.826 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.217 0.783 33 H 0.106 0.894 34 H 0.136 0.864 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.423 14.492 3.802 15.622 hybrid contribution -1.233 -0.433 -0.214 1.324 sum 3.191 14.059 3.587 14.856 Atomic orbital electron populations 1.20945 0.90014 1.04191 1.03064 1.20312 0.97014 0.92318 0.93613 1.22038 0.95616 0.98578 1.03759 1.22732 0.91786 0.96270 0.95152 1.67719 1.41179 0.98470 1.12766 1.22777 0.91141 0.96266 0.93832 1.21008 0.95224 0.95973 1.02836 1.19792 0.96875 0.90734 0.86903 1.43832 1.65860 1.23008 1.06542 1.17321 1.01150 0.88289 0.93927 1.20082 1.05851 0.96652 0.95864 1.20925 1.00822 0.95311 0.97433 1.17497 0.92015 0.92481 0.90700 1.19368 1.23740 0.96244 1.10478 0.90953 1.25794 0.94799 0.99246 0.94192 1.69858 1.24432 1.29477 1.19633 0.86414 0.81990 0.80735 0.78180 1.19856 1.20280 1.18672 1.20543 1.05652 0.96998 0.97522 1.19801 1.05483 0.99032 0.93526 0.90502 0.91246 0.89456 0.84962 0.82991 0.82611 0.92353 0.92300 0.78343 0.89404 0.86427 0.91320 0.89063 0.89663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.28 9.36 36.01 0.34 -0.94 16 2 C -0.02 -0.27 5.92 -104.31 -0.62 -0.89 16 3 C -0.18 -1.79 9.82 -39.44 -0.39 -2.17 16 4 C 0.10 1.03 11.18 -17.55 -0.20 0.83 16 5 N -0.49 -6.37 10.36 -13.25 -0.14 -6.51 16 6 C 0.12 1.50 10.83 -17.54 -0.19 1.31 16 7 C -0.15 -1.88 5.27 -104.48 -0.55 -2.43 16 8 C 0.18 2.63 4.18 -5.19 -0.02 2.61 16 9 N -0.76 -12.67 5.13 -59.67 -0.31 -12.98 16 10 C 0.09 1.89 6.67 -83.69 -0.56 1.34 16 11 C -0.16 -3.71 9.23 -39.77 -0.37 -4.08 16 12 C -0.12 -3.23 8.63 -39.26 -0.34 -3.57 16 13 C 0.08 2.04 5.57 -106.79 -0.59 1.44 16 14 C -0.47 -12.62 9.03 -37.88 -0.34 -12.97 16 15 H 0.07 1.89 7.91 -52.49 -0.41 1.48 16 16 C 0.07 1.92 5.13 -17.34 -0.09 1.84 16 17 N -0.81 -21.30 10.98 55.54 0.61 -20.69 16 18 Si 0.90 19.11 29.59 -169.99 -5.03 14.08 16 19 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 20 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 22 C -0.19 -4.59 9.74 -39.26 -0.38 -4.97 16 23 C -0.16 -3.46 9.82 -39.77 -0.39 -3.85 16 24 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 26 H 0.09 1.06 6.54 -51.93 -0.34 0.72 16 27 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 28 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 29 H 0.16 1.81 8.04 -52.49 -0.42 1.39 16 30 H 0.06 0.87 7.79 -51.93 -0.40 0.46 16 31 H 0.06 0.85 7.18 -51.93 -0.37 0.48 16 32 H 0.38 6.02 8.46 -40.82 -0.35 5.67 16 33 H 0.09 1.81 6.68 -52.48 -0.35 1.46 16 34 H 0.12 3.16 6.18 -52.49 -0.32 2.84 16 35 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 36 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 37 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 313.31 15.07 4.72 4.72 Total: -1.00 -28.67 313.31 -9.47 -38.15 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -4.64 Total: 9.73 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: -4.69 Total: -26.50 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.17 Total: -40.18 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.67 -9.47 -38.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135444747.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.042 kcal (2) G-P(sol) polarization free energy of solvation -28.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds