Wall clock time and date at job start Mon Mar 30 2020 07:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38678 * 120.78862 * 2 1 4 4 C 1.38179 * 119.15951 * 180.02562 * 3 2 1 5 5 N 1.31882 * 120.77183 * 0.02960 * 4 3 2 6 6 C 1.31862 * 121.72182 * 359.67345 * 5 4 3 7 7 C 1.38226 * 120.76223 * 0.59013 * 6 5 4 8 8 C 1.50693 * 120.41802 * 179.72730 * 7 6 5 9 9 N 1.46504 * 109.47146 * 259.71845 * 8 7 6 10 10 C 1.38856 * 119.99708 * 180.02562 * 9 8 7 11 11 C 1.39565 * 119.84901 * 359.72326 * 10 9 8 12 12 C 1.36334 * 120.16557 * 179.71944 * 11 10 9 13 13 C 1.40893 * 119.83490 * 0.55910 * 12 11 10 14 14 C 1.41136 * 120.15527 * 179.69901 * 13 12 11 15 15 H 1.07999 * 120.00088 * 155.10922 * 14 13 12 16 16 C 1.39862 * 119.99764 * 335.10827 * 14 13 12 17 17 N 1.30905 * 120.00205 * 342.12491 * 16 14 13 18 18 Si 1.86800 * 119.99783 * 162.13531 * 16 14 13 19 19 H 1.48494 * 109.47423 * 94.64924 * 18 16 14 20 20 H 1.48500 * 109.47101 * 214.65308 * 18 16 14 21 21 H 1.48504 * 109.47240 * 334.64514 * 18 16 14 22 22 C 1.40885 * 119.68806 * 359.71767 * 13 12 11 23 23 C 1.36339 * 119.83793 * 0.02562 * 22 13 12 24 24 H 1.08993 * 109.46949 * 269.97689 * 1 2 3 25 25 H 1.08995 * 109.47228 * 29.97708 * 1 2 3 26 26 H 1.08995 * 109.46648 * 149.97784 * 1 2 3 27 27 H 1.07999 * 120.41645 * 0.02562 * 3 2 1 28 28 H 1.07999 * 119.61394 * 179.97438 * 4 3 2 29 29 H 1.07996 * 119.61982 * 180.28926 * 6 5 4 30 30 H 1.08996 * 109.47576 * 19.72019 * 8 7 6 31 31 H 1.09004 * 109.47475 * 139.72162 * 8 7 6 32 32 H 0.96998 * 119.99820 * 359.97438 * 9 8 7 33 33 H 1.08005 * 119.91410 * 359.97438 * 11 10 9 34 34 H 1.07999 * 120.08502 * 180.27888 * 12 11 10 35 35 H 0.97006 * 119.99697 * 180.02562 * 17 16 14 36 36 H 1.07993 * 120.08153 * 179.97438 * 22 13 12 37 37 H 1.07993 * 119.92431 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5981 1.1520 -0.0005 5 7 4.2404 0.0002 -0.0016 6 6 3.5984 -1.1516 0.0041 7 6 2.2167 -1.1909 -0.0006 8 6 1.4910 -2.5116 -0.0002 9 7 1.0445 -2.8239 -1.3601 10 6 0.3478 -3.9989 -1.6093 11 6 0.0796 -4.8827 -0.5630 12 6 -0.6090 -6.0354 -0.7994 13 6 -1.0398 -6.3392 -2.1060 14 6 -1.7476 -7.5336 -2.3595 15 1 -2.4109 -7.5983 -3.2093 16 6 -1.5898 -8.6336 -1.5102 17 7 -0.5577 -8.6981 -0.7075 18 14 -2.8517 -10.0108 -1.5214 19 1 -2.3981 -11.0905 -2.4345 20 1 -3.0028 -10.5550 -0.1480 21 1 -4.1576 -9.4819 -1.9906 22 6 -0.7605 -5.4451 -3.1584 23 6 -0.0755 -4.2935 -2.9064 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3633 0.8901 -0.5134 26 1 -0.3632 -0.8898 -0.5142 27 1 1.6967 2.1378 0.0004 28 1 4.1583 2.0754 -0.0010 29 1 4.1586 -2.0749 0.0078 30 1 2.1625 -3.2951 0.3507 31 1 0.6265 -2.4510 0.6611 32 1 1.2350 -2.2096 -2.0862 33 1 0.4148 -4.6509 0.4372 34 1 -0.8197 -6.7163 0.0120 35 1 -0.4481 -9.4612 -0.1187 36 1 -1.0874 -5.6717 -4.1624 37 1 0.1397 -3.6074 -3.7120 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135444747.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:33 Heat of formation + Delta-G solvation = 35.549621 kcal Electronic energy + Delta-G solvation = -18919.168151 eV Core-core repulsion = 16045.889027 eV Total energy + Delta-G solvation = -2873.279124 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.35506 -39.69518 -37.02425 -35.32414 -34.36118 -32.65426 -31.33918 -30.35646 -28.90544 -27.34207 -25.62318 -23.80686 -23.06765 -22.39464 -21.53848 -19.14075 -18.04249 -17.67019 -17.28734 -16.82747 -16.58466 -15.77205 -15.55338 -15.07540 -14.76779 -14.59378 -14.37049 -14.10599 -13.77894 -13.72942 -13.60541 -13.55573 -13.21417 -13.02308 -12.72666 -12.60801 -12.26259 -12.17545 -11.58285 -11.19400 -11.06785 -10.46502 -10.39334 -10.27836 -10.02865 -9.39409 -8.54226 -8.16846 -6.00113 0.08481 0.27535 1.11781 1.19563 1.41023 1.53306 1.59908 2.28233 2.67290 2.85397 3.12782 3.50197 3.73198 3.81117 3.86224 3.93240 4.03725 4.45054 4.50009 4.52426 4.57139 4.66998 4.73377 4.74517 4.88552 5.04731 5.08208 5.14543 5.21422 5.28433 5.43558 5.46939 5.68606 5.77186 5.80666 5.96693 6.20030 6.39894 6.66791 6.86576 6.99982 7.09588 7.12198 7.29209 8.49055 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.043017 B = 0.003469 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.756119 B = 8068.756631 C = 8209.194987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.029 4.029 3 C -0.172 4.172 4 C 0.095 3.905 5 N -0.516 5.516 6 C 0.106 3.894 7 C -0.159 4.159 8 C 0.185 3.815 9 N -0.743 5.743 10 C 0.114 3.886 11 C -0.172 4.172 12 C -0.143 4.143 13 C 0.037 3.963 14 C -0.507 4.507 15 H 0.067 0.933 16 C 0.032 3.968 17 N -0.841 5.841 18 Si 0.975 3.025 19 H -0.266 1.266 20 H -0.268 1.268 21 H -0.261 1.261 22 C -0.195 4.195 23 C -0.164 4.164 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.065 0.935 27 H 0.165 0.835 28 H 0.183 0.817 29 H 0.157 0.843 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.393 0.607 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.282 0.718 36 H 0.096 0.904 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.528 16.977 3.571 17.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.037 4.037 3 C -0.192 4.192 4 C -0.061 4.061 5 N -0.226 5.226 6 C -0.051 4.051 7 C -0.161 4.161 8 C 0.060 3.940 9 N -0.378 5.378 10 C 0.015 3.985 11 C -0.194 4.194 12 C -0.163 4.163 13 C 0.034 3.966 14 C -0.538 4.538 15 H 0.085 0.915 16 C -0.180 4.180 17 N -0.469 5.469 18 Si 0.797 3.203 19 H -0.191 1.191 20 H -0.193 1.193 21 H -0.185 1.185 22 C -0.216 4.216 23 C -0.186 4.186 24 H 0.104 0.896 25 H 0.108 0.892 26 H 0.084 0.916 27 H 0.183 0.817 28 H 0.200 0.800 29 H 0.174 0.826 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.227 0.773 33 H 0.124 0.876 34 H 0.116 0.884 35 H 0.092 0.908 36 H 0.114 0.886 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.584 16.802 3.936 17.856 hybrid contribution -1.151 -0.868 -0.248 1.463 sum 3.433 15.935 3.688 16.712 Atomic orbital electron populations 1.20934 0.89216 1.04086 1.03631 1.20533 0.97653 0.92392 0.93144 1.22362 0.95412 0.99307 1.02097 1.23311 0.92582 0.96562 0.93685 1.67746 1.41932 0.99142 1.13762 1.22836 0.91296 0.96665 0.94302 1.20786 0.95122 0.95461 1.04759 1.19799 0.96946 0.91915 0.85302 1.43845 1.64395 1.21443 1.08140 1.17391 0.99188 0.88785 0.93135 1.20235 1.05656 0.96164 0.97367 1.20855 1.02359 0.96309 0.96788 1.17811 0.93634 0.93484 0.91695 1.19593 1.25066 0.97483 1.11636 0.91474 1.26595 0.96417 1.01438 0.93504 1.69921 1.25888 1.30611 1.20503 0.85307 0.79057 0.77422 0.78544 1.19122 1.19298 1.18514 1.20741 1.05859 0.97602 0.97353 1.20079 1.04880 0.98810 0.94833 0.89599 0.89214 0.91636 0.81743 0.80041 0.82576 0.92846 0.92145 0.77255 0.87568 0.88363 0.90778 0.88628 0.86702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.15 9.36 71.24 0.67 -1.48 16 2 C -0.03 -0.57 5.92 -19.66 -0.12 -0.69 16 3 C -0.17 -2.77 9.82 22.36 0.22 -2.55 16 4 C 0.09 1.71 11.18 84.67 0.95 2.65 16 5 N -0.52 -12.36 10.36 -195.85 -2.03 -14.39 16 6 C 0.11 2.57 10.83 84.69 0.92 3.48 16 7 C -0.16 -3.75 5.27 -19.78 -0.10 -3.85 16 8 C 0.19 5.10 4.18 85.63 0.36 5.45 16 9 N -0.74 -23.63 5.13 -342.70 -1.76 -25.38 16 10 C 0.11 4.71 6.67 38.67 0.26 4.97 16 11 C -0.17 -7.89 9.23 22.15 0.20 -7.69 16 12 C -0.14 -7.64 8.63 22.48 0.19 -7.45 16 13 C 0.04 2.03 5.57 -21.27 -0.12 1.91 16 14 C -0.51 -28.47 9.03 23.38 0.21 -28.26 16 15 H 0.07 3.67 7.91 -2.91 -0.02 3.64 16 16 C 0.03 1.71 5.13 85.22 0.44 2.14 16 17 N -0.84 -45.91 10.98 21.82 0.24 -45.67 16 18 Si 0.98 40.08 29.59 68.60 2.03 42.11 16 19 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 20 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 21 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 22 C -0.20 -9.73 9.74 22.47 0.22 -9.51 16 23 C -0.16 -7.09 9.82 22.15 0.22 -6.87 16 24 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.09 1.20 8.10 -2.39 -0.02 1.18 16 26 H 0.06 1.46 6.54 -2.39 -0.02 1.44 16 27 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 28 H 0.18 2.05 8.06 -2.91 -0.02 2.02 16 29 H 0.16 3.57 8.04 -2.91 -0.02 3.55 16 30 H 0.05 1.54 7.79 -2.39 -0.02 1.53 16 31 H 0.06 1.67 7.18 -2.39 -0.02 1.65 16 32 H 0.39 11.39 8.46 -92.71 -0.78 10.61 16 33 H 0.11 4.37 6.68 -2.91 -0.02 4.35 16 34 H 0.10 5.55 6.18 -2.91 -0.02 5.53 16 35 H 0.28 14.00 8.30 -92.70 -0.77 13.23 16 36 H 0.10 4.53 8.06 -2.91 -0.02 4.51 16 37 H 0.12 4.24 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -63.51 313.31 3.29 -60.21 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: 0.30 Total: 30.86 kcal Atomic # 6 Polarization: -52.25 SS G_CDS: 4.51 Total: -47.74 kcal Atomic # 7 Polarization: -81.90 SS G_CDS: -3.55 Total: -85.45 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Total: -63.51 3.29 -60.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135444747.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.762 kcal (2) G-P(sol) polarization free energy of solvation -63.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds