Wall clock time and date at job start Mon Mar 30 2020 06:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47335 * 2 1 4 4 H 1.09005 * 109.46710 * 305.59497 * 3 2 1 5 5 C 1.50697 * 109.47286 * 65.59180 * 3 2 1 6 6 H 1.08006 * 119.99593 * 28.14024 * 5 3 2 7 7 C 1.37870 * 120.00436 * 208.13669 * 5 3 2 8 8 N 1.31518 * 119.99872 * 5.96156 * 7 5 3 9 9 Si 1.86804 * 120.00372 * 185.95576 * 7 5 3 10 10 H 1.48498 * 109.46592 * 60.00619 * 9 7 5 11 11 H 1.48503 * 109.47241 * 180.02562 * 9 7 5 12 12 H 1.48491 * 109.47087 * 300.00695 * 9 7 5 13 13 C 1.50705 * 109.47138 * 185.59602 * 3 2 1 14 14 O 1.21252 * 119.99730 * 269.99792 * 13 3 2 15 15 C 1.47167 * 119.99834 * 90.27656 * 13 3 2 16 16 C 1.39855 * 120.17405 * 359.44951 * 15 13 3 17 17 C 1.37887 * 119.82323 * 179.74741 * 16 15 13 18 18 C 1.38403 * 120.17297 * 0.52487 * 17 16 15 19 19 C 1.50699 * 119.82555 * 179.74185 * 18 17 16 20 20 F 1.39902 * 109.46740 * 119.98222 * 19 18 17 21 21 F 1.39893 * 109.47406 * 239.98213 * 19 18 17 22 22 C 1.38402 * 120.34785 * 359.72861 * 18 17 16 23 23 C 1.37889 * 120.17636 * 0.02562 * 22 18 17 24 24 H 1.09007 * 109.47325 * 294.00672 * 1 2 3 25 25 H 1.09004 * 109.47603 * 54.00092 * 1 2 3 26 26 H 1.08999 * 109.47504 * 174.00510 * 1 2 3 27 27 H 1.09003 * 109.47253 * 239.99973 * 2 1 3 28 28 H 1.08997 * 109.47333 * 120.00311 * 2 1 3 29 29 H 0.96996 * 119.99867 * 179.97438 * 8 7 5 30 30 H 1.08002 * 120.08244 * 359.97438 * 16 15 13 31 31 H 1.08001 * 119.91252 * 180.23241 * 17 16 15 32 32 H 1.08996 * 109.47019 * 359.97438 * 19 18 17 33 33 H 1.08006 * 119.91498 * 179.97438 * 22 18 17 34 34 H 1.08001 * 120.09298 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5971 1.9844 -0.8357 5 6 1.6539 2.1118 1.2938 6 1 1.5280 1.5225 2.1901 7 6 1.4616 3.4765 1.3334 8 7 1.4994 4.1784 0.2219 9 14 1.1471 4.3285 2.9659 10 1 2.3014 4.1025 3.8724 11 1 0.9737 5.7857 2.7384 12 1 -0.0839 3.7745 3.5843 13 6 3.5407 1.4447 -0.1386 14 8 4.2408 1.4115 0.8508 15 6 4.1562 1.4933 -1.4744 16 6 3.3520 1.5260 -2.6182 17 6 3.9363 1.5768 -3.8661 18 6 5.3148 1.5845 -3.9889 19 6 5.9452 1.6343 -5.3568 20 9 6.7361 2.7833 -5.4642 21 9 6.7424 0.5002 -5.5445 22 6 6.1175 1.5471 -2.8621 23 6 5.5484 1.5012 -1.6069 24 1 -0.3634 0.4181 0.9388 25 1 -0.3634 0.6040 -0.8314 26 1 -0.3634 -1.0220 -0.1073 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.3637 5.1384 0.2497 30 1 2.2761 1.5152 -2.5240 31 1 3.3166 1.6059 -4.7502 32 1 5.1637 1.6587 -6.1163 33 1 7.1925 1.5530 -2.9660 34 1 6.1761 1.4716 -0.7285 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000150333611.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:22 Heat of formation + Delta-G solvation = -130.847903 kcal Electronic energy + Delta-G solvation = -19968.733804 eV Core-core repulsion = 16501.716861 eV Total energy + Delta-G solvation = -3467.016943 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.02991 -47.01717 -39.47931 -37.61530 -34.40790 -32.09494 -31.76609 -30.89717 -27.75531 -26.38208 -24.23753 -22.49415 -22.32240 -20.64299 -18.89904 -17.51710 -17.37031 -17.24633 -16.51269 -15.83986 -14.90693 -14.55441 -14.40883 -13.97600 -13.60150 -13.54423 -13.51062 -13.39813 -13.30305 -13.13318 -12.52089 -12.23080 -12.01927 -11.52223 -11.17899 -11.06864 -11.01438 -10.92480 -10.78097 -10.48239 -10.25685 -9.35091 -9.28966 -8.83180 -8.75344 -8.71134 -8.27138 -6.15847 -4.15884 0.92072 1.55338 3.13724 3.30308 3.34338 3.39598 3.67451 4.10639 4.16759 4.38301 4.50627 4.86024 5.00182 5.04211 5.10233 5.32978 5.58993 5.64366 5.88148 5.97451 6.01524 6.10826 6.18085 6.38119 6.43163 6.58000 6.64082 6.78194 6.87067 7.01700 7.04165 7.16666 7.43292 7.80534 8.16204 8.74963 8.88642 9.48132 10.94249 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.025408 B = 0.004950 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.757067 B = 5655.035165 C = 6027.863638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.103 4.103 3 C -0.002 4.002 4 H 0.081 0.919 5 C -0.495 4.495 6 H 0.060 0.940 7 C 0.065 3.935 8 N -0.892 5.892 9 Si 0.895 3.105 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.395 3.605 14 O -0.458 6.458 15 C -0.122 4.122 16 C -0.069 4.069 17 C -0.102 4.102 18 C -0.163 4.163 19 C 0.313 3.687 20 F -0.201 7.201 21 F -0.202 7.202 22 C -0.097 4.097 23 C -0.080 4.080 24 H 0.063 0.937 25 H 0.048 0.952 26 H 0.032 0.968 27 H 0.037 0.963 28 H 0.051 0.949 29 H 0.264 0.736 30 H 0.144 0.856 31 H 0.131 0.869 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.828 -5.485 -11.206 13.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.141 4.141 3 C -0.021 4.021 4 H 0.098 0.902 5 C -0.532 4.532 6 H 0.078 0.922 7 C -0.138 4.138 8 N -0.530 5.530 9 Si 0.722 3.278 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.200 1.200 13 C 0.272 3.728 14 O -0.333 6.333 15 C -0.123 4.123 16 C -0.087 4.087 17 C -0.120 4.120 18 C -0.164 4.164 19 C 0.260 3.740 20 F -0.183 7.183 21 F -0.184 7.184 22 C -0.115 4.115 23 C -0.098 4.098 24 H 0.082 0.918 25 H 0.067 0.933 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.162 0.838 31 H 0.148 0.852 32 H 0.135 0.865 33 H 0.143 0.857 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.216 -5.307 -10.754 12.712 hybrid contribution 0.124 0.782 0.696 1.054 sum 4.340 -4.525 -10.059 11.853 Atomic orbital electron populations 1.21579 0.95803 0.98840 1.02704 1.21380 0.96224 0.97001 0.99475 1.19387 0.88046 0.93423 1.01269 0.90159 1.20753 1.46230 0.92041 0.94216 0.92162 1.25002 0.94503 0.97671 0.96599 1.69879 1.49481 1.07332 1.26304 0.86598 0.78897 0.78225 0.84075 1.20009 1.21271 1.20035 1.23931 0.94381 0.69346 0.85158 1.90332 1.66141 1.36099 1.40698 1.21518 0.93892 0.99313 0.97621 1.21608 1.01072 0.95124 0.90859 1.20874 0.92815 0.99924 0.98349 1.20412 0.95082 1.06922 0.94014 1.20436 0.85814 0.71196 0.96570 1.93010 1.77231 1.50828 1.97190 1.92999 1.76965 1.52072 1.96332 1.20836 0.99678 0.99149 0.91821 1.21485 0.94768 0.96263 0.97313 0.91840 0.93285 0.94850 0.94469 0.93046 0.92607 0.83792 0.85154 0.86494 0.85666 0.84783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 9.63 37.15 0.36 -1.99 16 2 C -0.10 -2.01 5.37 -26.73 -0.14 -2.15 16 3 C 0.00 -0.05 1.60 -92.92 -0.15 -0.20 16 4 H 0.08 1.92 5.76 -51.93 -0.30 1.62 16 5 C -0.49 -13.14 6.87 -34.44 -0.24 -13.38 16 6 H 0.06 1.62 7.82 -52.48 -0.41 1.21 16 7 C 0.06 1.76 5.45 -17.82 -0.10 1.66 16 8 N -0.89 -24.75 12.87 55.43 0.71 -24.03 16 9 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 10 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 C 0.40 9.16 6.17 -30.68 -0.19 8.97 16 14 O -0.46 -11.86 16.35 5.58 0.09 -11.77 16 15 C -0.12 -2.37 5.87 -105.06 -0.62 -2.99 16 16 C -0.07 -1.13 9.36 -39.11 -0.37 -1.50 16 17 C -0.10 -1.36 9.65 -39.65 -0.38 -1.74 16 18 C -0.16 -2.23 5.38 -104.50 -0.56 -2.79 16 19 C 0.31 3.52 5.44 36.00 0.20 3.72 16 20 F -0.20 -2.61 17.25 2.25 0.04 -2.57 16 21 F -0.20 -2.51 17.25 2.25 0.04 -2.48 16 22 C -0.10 -1.45 9.57 -39.65 -0.38 -1.83 16 23 C -0.08 -1.41 9.60 -39.10 -0.38 -1.78 16 24 H 0.06 1.22 7.60 -51.92 -0.39 0.83 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.14 2.31 6.37 -52.49 -0.33 1.97 16 31 H 0.13 1.26 7.94 -52.49 -0.42 0.84 16 32 H 0.12 0.88 7.86 -51.93 -0.41 0.47 16 33 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 34 H 0.13 2.33 7.65 -52.49 -0.40 1.93 16 LS Contribution 304.47 15.07 4.59 4.59 Total: -1.00 -30.01 304.47 -6.41 -36.42 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -3.91 Total: -0.48 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -2.94 Total: -16.01 kcal Atomic # 7 Polarization: -24.75 SS G_CDS: 0.71 Total: -24.03 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.08 Total: -5.05 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.01 -6.41 -36.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150333611.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.430 kcal (2) G-P(sol) polarization free energy of solvation -30.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds