Wall clock time and date at job start Mon Mar 30 2020 06:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47335 * 2 1 4 4 H 1.09005 * 109.46710 * 305.59497 * 3 2 1 5 5 C 1.50697 * 109.47286 * 65.59180 * 3 2 1 6 6 H 1.08006 * 119.99593 * 28.14024 * 5 3 2 7 7 C 1.37870 * 120.00436 * 208.13669 * 5 3 2 8 8 N 1.31518 * 119.99872 * 5.96156 * 7 5 3 9 9 Si 1.86804 * 120.00372 * 185.95576 * 7 5 3 10 10 H 1.48498 * 109.46592 * 60.00619 * 9 7 5 11 11 H 1.48503 * 109.47241 * 180.02562 * 9 7 5 12 12 H 1.48491 * 109.47087 * 300.00695 * 9 7 5 13 13 C 1.50705 * 109.47138 * 185.59602 * 3 2 1 14 14 O 1.21252 * 119.99730 * 269.99792 * 13 3 2 15 15 C 1.47167 * 119.99834 * 90.27656 * 13 3 2 16 16 C 1.39855 * 120.17405 * 359.44951 * 15 13 3 17 17 C 1.37887 * 119.82323 * 179.74741 * 16 15 13 18 18 C 1.38403 * 120.17297 * 0.52487 * 17 16 15 19 19 C 1.50699 * 119.82555 * 179.74185 * 18 17 16 20 20 F 1.39902 * 109.46740 * 119.98222 * 19 18 17 21 21 F 1.39893 * 109.47406 * 239.98213 * 19 18 17 22 22 C 1.38402 * 120.34785 * 359.72861 * 18 17 16 23 23 C 1.37889 * 120.17636 * 0.02562 * 22 18 17 24 24 H 1.09007 * 109.47325 * 294.00672 * 1 2 3 25 25 H 1.09004 * 109.47603 * 54.00092 * 1 2 3 26 26 H 1.08999 * 109.47504 * 174.00510 * 1 2 3 27 27 H 1.09003 * 109.47253 * 239.99973 * 2 1 3 28 28 H 1.08997 * 109.47333 * 120.00311 * 2 1 3 29 29 H 0.96996 * 119.99867 * 179.97438 * 8 7 5 30 30 H 1.08002 * 120.08244 * 359.97438 * 16 15 13 31 31 H 1.08001 * 119.91252 * 180.23241 * 17 16 15 32 32 H 1.08996 * 109.47019 * 359.97438 * 19 18 17 33 33 H 1.08006 * 119.91498 * 179.97438 * 22 18 17 34 34 H 1.08001 * 120.09298 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5971 1.9844 -0.8357 5 6 1.6539 2.1118 1.2938 6 1 1.5280 1.5225 2.1901 7 6 1.4616 3.4765 1.3334 8 7 1.4994 4.1784 0.2219 9 14 1.1471 4.3285 2.9659 10 1 2.3014 4.1025 3.8724 11 1 0.9737 5.7857 2.7384 12 1 -0.0839 3.7745 3.5843 13 6 3.5407 1.4447 -0.1386 14 8 4.2408 1.4115 0.8508 15 6 4.1562 1.4933 -1.4744 16 6 3.3520 1.5260 -2.6182 17 6 3.9363 1.5768 -3.8661 18 6 5.3148 1.5845 -3.9889 19 6 5.9452 1.6343 -5.3568 20 9 6.7361 2.7833 -5.4642 21 9 6.7424 0.5002 -5.5445 22 6 6.1175 1.5471 -2.8621 23 6 5.5484 1.5012 -1.6069 24 1 -0.3634 0.4181 0.9388 25 1 -0.3634 0.6040 -0.8314 26 1 -0.3634 -1.0220 -0.1073 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.3637 5.1384 0.2497 30 1 2.2761 1.5152 -2.5240 31 1 3.3166 1.6059 -4.7502 32 1 5.1637 1.6587 -6.1163 33 1 7.1925 1.5530 -2.9660 34 1 6.1761 1.4716 -0.7285 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000150333611.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:22 Heat of formation + Delta-G solvation = -146.514681 kcal Electronic energy + Delta-G solvation = -19969.413166 eV Core-core repulsion = 16501.716861 eV Total energy + Delta-G solvation = -3467.696305 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.102 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.94256 -47.93994 -40.95417 -39.16778 -36.20813 -33.91560 -33.13644 -32.12593 -29.40056 -27.72089 -25.98412 -23.78747 -23.57471 -22.15481 -20.53373 -18.74096 -18.53627 -18.15610 -18.11776 -17.36236 -16.65472 -16.18378 -15.68518 -15.34364 -15.12096 -15.03673 -14.89042 -14.48449 -14.41772 -14.32404 -14.22004 -13.50271 -13.33099 -13.18328 -12.92329 -12.86939 -12.61123 -12.30077 -12.18294 -11.93941 -11.91890 -11.19215 -11.12207 -10.72476 -10.10408 -10.07537 -10.02669 -8.22324 -6.25792 -0.41591 0.33427 1.35858 1.40052 1.46315 1.61447 2.39187 2.72742 2.75793 3.04638 3.27312 3.55836 3.57757 3.91496 4.03808 4.10697 4.32482 4.40709 4.44746 4.49106 4.62299 4.69639 4.91437 4.96078 5.12108 5.17486 5.23552 5.28946 5.33807 5.47899 5.56963 5.69502 5.72036 5.79624 6.21127 6.81353 6.98493 7.39315 8.86857 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.025408 B = 0.004950 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.757067 B = 5655.035165 C = 6027.863638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.099 4.099 3 C -0.006 4.006 4 H 0.074 0.926 5 C -0.507 4.507 6 H 0.045 0.955 7 C 0.020 3.980 8 N -0.915 5.915 9 Si 0.943 3.057 10 H -0.286 1.286 11 H -0.280 1.280 12 H -0.262 1.262 13 C 0.391 3.609 14 O -0.505 6.505 15 C -0.158 4.158 16 C -0.073 4.073 17 C -0.085 4.085 18 C -0.156 4.156 19 C 0.315 3.685 20 F -0.212 7.212 21 F -0.209 7.209 22 C -0.101 4.101 23 C -0.093 4.093 24 H 0.040 0.960 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.038 0.962 29 H 0.264 0.736 30 H 0.146 0.854 31 H 0.181 0.819 32 H 0.170 0.830 33 H 0.141 0.859 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.388 -5.905 -13.899 15.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.137 4.137 3 C -0.025 4.025 4 H 0.092 0.908 5 C -0.545 4.545 6 H 0.064 0.936 7 C -0.180 4.180 8 N -0.554 5.554 9 Si 0.769 3.231 10 H -0.212 1.212 11 H -0.205 1.205 12 H -0.187 1.187 13 C 0.272 3.728 14 O -0.383 6.383 15 C -0.159 4.159 16 C -0.091 4.091 17 C -0.103 4.103 18 C -0.157 4.157 19 C 0.262 3.738 20 F -0.193 7.193 21 F -0.190 7.190 22 C -0.118 4.118 23 C -0.111 4.111 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.164 0.836 31 H 0.198 0.802 32 H 0.187 0.813 33 H 0.159 0.841 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.759 -5.737 -13.460 15.106 hybrid contribution 0.313 0.862 1.455 1.719 sum 4.072 -4.875 -12.005 13.582 Atomic orbital electron populations 1.21521 0.94266 1.00883 1.01637 1.21350 0.97529 0.94685 1.00125 1.19410 0.88515 0.95295 0.99320 0.90825 1.21017 1.45867 0.92417 0.95168 0.93633 1.25622 0.94842 0.98337 0.99193 1.69950 1.50647 1.07326 1.27449 0.85836 0.78701 0.77720 0.80875 1.21166 1.20501 1.18691 1.24127 0.94378 0.67757 0.86556 1.90297 1.66800 1.38762 1.42467 1.21224 0.94957 1.03289 0.96427 1.21728 1.01033 0.95092 0.91274 1.21323 0.93162 0.97174 0.98596 1.20857 0.95385 1.04345 0.95080 1.20837 0.86450 0.70434 0.96077 1.92998 1.77692 1.51482 1.97126 1.92994 1.77327 1.52475 1.96229 1.21050 1.00838 0.98630 0.91328 1.21448 0.94097 0.97321 0.98281 0.94035 0.92940 0.91458 0.91763 0.94351 0.92697 0.83601 0.80178 0.81285 0.84093 0.86077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 9.63 71.98 0.69 -3.65 16 2 C -0.10 -3.86 5.37 30.59 0.16 -3.70 16 3 C -0.01 -0.30 1.60 -12.29 -0.02 -0.32 16 4 H 0.07 3.58 5.76 -2.38 -0.01 3.57 16 5 C -0.51 -27.75 6.87 25.60 0.18 -27.57 16 6 H 0.05 2.55 7.82 -2.91 -0.02 2.53 16 7 C 0.02 1.09 5.45 84.65 0.46 1.55 16 8 N -0.91 -51.53 12.87 21.45 0.28 -51.25 16 9 Si 0.94 44.54 29.54 68.60 2.03 46.57 16 10 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 13 C 0.39 18.82 6.17 28.03 0.17 19.00 16 14 O -0.50 -27.60 16.35 -2.94 -0.05 -27.65 16 15 C -0.16 -6.20 5.87 -20.15 -0.12 -6.32 16 16 C -0.07 -2.30 9.36 22.58 0.21 -2.09 16 17 C -0.09 -1.94 9.65 22.23 0.21 -1.72 16 18 C -0.16 -3.70 5.38 -19.79 -0.11 -3.80 16 19 C 0.32 5.62 5.44 71.24 0.39 6.01 16 20 F -0.21 -4.73 17.25 44.97 0.78 -3.96 16 21 F -0.21 -4.40 17.25 44.97 0.78 -3.62 16 22 C -0.10 -2.87 9.57 22.23 0.21 -2.66 16 23 C -0.09 -3.32 9.60 22.58 0.22 -3.10 16 24 H 0.04 1.59 7.60 -2.38 -0.02 1.57 16 25 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 26 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 30 H 0.15 4.45 6.37 -2.91 -0.02 4.43 16 31 H 0.18 2.31 7.94 -2.91 -0.02 2.28 16 32 H 0.17 1.40 7.86 -2.39 -0.02 1.38 16 33 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 34 H 0.12 4.48 7.65 -2.91 -0.02 4.46 16 Total: -1.00 -67.76 304.47 7.58 -60.17 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: 1.11 Total: 8.12 kcal Atomic # 6 Polarization: -31.04 SS G_CDS: 2.67 Total: -28.37 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: 0.28 Total: -51.25 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.05 Total: -27.65 kcal Atomic # 9 Polarization: -9.13 SS G_CDS: 1.55 Total: -7.58 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -67.76 7.58 -60.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150333611.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.343 kcal (2) G-P(sol) polarization free energy of solvation -67.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds